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GSE49485: Hypoxia transcriptome sequencing of rat brain.

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Results for Msx3

Z-value: 0.42

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Transcription factors associated with Msx3

Gene Symbol Gene ID Gene Info
Msx3
ENSRNOG00000046776 msh homeobox 3

Activity-expression correlation:

GenePromoterPearson corr. coef.P-valuePlot
Msx3rn6_v1_chr1_-_212517151_2125171510.138.3e-01Click!

Activity profile of Msx3 motif

Sorted Z-values of Msx3 motif

Top targets:  

Promoter Log-likelihood Transcript Gene Gene Info
chrM_+_9870 0.13 ENSRNOT00000044582
Mt-nd4l
mitochondrially encoded NADH 4L dehydrogenase
chr3_-_90751055 0.12 ENSRNOT00000040741
LOC499843
LRRGT00091
chr4_+_147832136 0.12 ENSRNOT00000064603
Rho
rhodopsin
chr5_+_6373583 0.12 ENSRNOT00000084749
AABR07046778.1

chr6_-_76552559 0.12 ENSRNOT00000065230
Ralgapa1
Ral GTPase activating protein catalytic alpha subunit 1
chr9_+_73378057 0.11 ENSRNOT00000043627
ENSRNOT00000045766
ENSRNOT00000092445
ENSRNOT00000037974
Map2
microtubule-associated protein 2
chr2_-_219262901 0.11 ENSRNOT00000037068
Gpr88
G-protein coupled receptor 88
chr3_-_165700489 0.10 ENSRNOT00000017008
Zfp93
zinc finger protein 93
chr13_+_96303703 0.09 ENSRNOT00000084718
ENSRNOT00000029723
Efcab2
EF-hand calcium binding domain 2
chr15_-_55209342 0.08 ENSRNOT00000021752
Rb1
RB transcriptional corepressor 1
chr4_-_66955732 0.08 ENSRNOT00000084282
Kdm7a
lysine (K)-specific demethylase 7A
chrX_+_14019961 0.07 ENSRNOT00000004785
Sytl5
synaptotagmin-like 5
chr12_-_45801842 0.07 ENSRNOT00000078837
AABR07036513.1

chr11_-_71136673 0.06 ENSRNOT00000042240
Fyttd1
forty-two-three domain containing 1
chr4_-_176606382 0.06 ENSRNOT00000065576
Recql
RecQ like helicase
chr8_+_48718329 0.06 ENSRNOT00000089763
Slc37a4
solute carrier family 37 member 4
chr13_-_76049363 0.06 ENSRNOT00000075865
ENSRNOT00000007455
Brinp2
BMP/retinoic acid inducible neural specific 2
chr3_-_10196626 0.06 ENSRNOT00000012234
Prdm12
PR/SET domain 12
chr4_+_88694583 0.06 ENSRNOT00000009202
Ppm1k
protein phosphatase, Mg2+/Mn2+ dependent, 1K
chr7_+_24638208 0.05 ENSRNOT00000009135
Mterf2
mitochondrial transcription termination factor 2
chr15_+_87722221 0.05 ENSRNOT00000082688
Scel
sciellin
chr2_-_196177775 0.05 ENSRNOT00000028553
Zfp687
zinc finger protein 687
chr2_+_57276919 0.05 ENSRNOT00000063899
RGD1310081
similar to hypothetical protein FLJ13231
chr2_-_178521038 0.05 ENSRNOT00000033107
Rxfp1
relaxin/insulin-like family peptide receptor 1
chrM_+_9451 0.05 ENSRNOT00000041241
Mt-nd3
mitochondrially encoded NADH dehydrogenase 3
chr6_-_42002819 0.05 ENSRNOT00000032417
Greb1
growth regulation by estrogen in breast cancer 1
chr2_+_195996521 0.05 ENSRNOT00000082849
Pogz
pogo transposable element with ZNF domain
chr18_+_45023932 0.04 ENSRNOT00000039379
Fam170a
family with sequence similarity 170, member A
chr16_+_84465656 0.04 ENSRNOT00000043188
LOC689713
LRRGT00175
chr1_-_241046249 0.04 ENSRNOT00000067796
ENSRNOT00000081866
Smc5
structural maintenance of chromosomes 5
chr7_-_120770435 0.04 ENSRNOT00000077000
Ddx17
DEAD-box helicase 17
chr4_+_31229913 0.04 ENSRNOT00000077134
ENSRNOT00000087897
Samd9l
sterile alpha motif domain containing 9-like
chr7_+_143122269 0.04 ENSRNOT00000082542
ENSRNOT00000045495
ENSRNOT00000081386
ENSRNOT00000067422
Krt86
keratin 86
chr18_-_4294136 0.03 ENSRNOT00000091909
Osbpl1a
oxysterol binding protein-like 1A
chr12_-_22138382 0.03 ENSRNOT00000001899
Lrch4
leucine rich repeats and calponin homology domain containing 4
chr4_+_176606649 0.03 ENSRNOT00000084700
Golt1b
golgi transport 1B
chr1_-_64147251 0.03 ENSRNOT00000088502
Cnot3
CCR4-NOT transcription complex, subunit 3
chr8_-_39551700 0.03 ENSRNOT00000091894
ENSRNOT00000076025
Pknox2
PBX/knotted 1 homeobox 2
chr17_-_87826421 0.03 ENSRNOT00000068156
Arhgap21
Rho GTPase activating protein 21
chr1_+_217459215 0.03 ENSRNOT00000092386
ENSRNOT00000092357
Shank2
SH3 and multiple ankyrin repeat domains 2
chr1_+_260093641 0.03 ENSRNOT00000019521
Ccnj
cyclin J
chr13_+_98311827 0.03 ENSRNOT00000082844
Cdc42bpa
CDC42 binding protein kinase alpha
chr1_+_101603222 0.03 ENSRNOT00000033278
Izumo1
izumo sperm-egg fusion 1
chr2_+_220432037 0.03 ENSRNOT00000021988
Frrs1
ferric-chelate reductase 1
chr7_-_72328128 0.03 ENSRNOT00000008227
Tspyl5
TSPY-like 5
chr3_+_112346627 0.02 ENSRNOT00000074392
Snap23
synaptosomal-associated protein 23
chr8_-_6305033 0.02 ENSRNOT00000029887
Cep126
centrosomal protein 126
chr13_-_111972603 0.02 ENSRNOT00000007870
Hsd11b1
hydroxysteroid 11-beta dehydrogenase 1
chrX_+_118197217 0.02 ENSRNOT00000090922
Htr2c
5-hydroxytryptamine receptor 2C
chrX_+_71342775 0.02 ENSRNOT00000004888
Itgb1bp2
integrin subunit beta 1 binding protein 2
chr1_-_38538987 0.02 ENSRNOT00000090406
ENSRNOT00000071275
LOC102551340
zinc finger protein 728-like
chr18_-_43945273 0.02 ENSRNOT00000088900
Dtwd2
DTW domain containing 2
chr8_+_115546893 0.02 ENSRNOT00000018932
Dcaf1
DDB1 and CUL4 associated factor 1
chr10_-_86645529 0.01 ENSRNOT00000011947
Med24
mediator complex subunit 24
chr2_-_256154584 0.01 ENSRNOT00000072487
AABR07013776.1

chr1_-_164101578 0.01 ENSRNOT00000022176
Uvrag
UV radiation resistance associated
chr15_+_39779648 0.01 ENSRNOT00000084505
Cab39l
calcium binding protein 39-like
chr5_+_133819726 0.01 ENSRNOT00000081075
Stil
Scl/Tal1 interrupting locus
chr7_-_143228060 0.01 ENSRNOT00000088923
ENSRNOT00000012640
Krt75
keratin 75
chr15_-_36798814 0.01 ENSRNOT00000065764
Cenpj
centromere protein J
chr6_-_50618694 0.01 ENSRNOT00000008980
Dld
dihydrolipoamide dehydrogenase
chr3_-_165537940 0.01 ENSRNOT00000071119
ENSRNOT00000070964
Sall4
spalt-like transcription factor 4
chr8_+_104106740 0.01 ENSRNOT00000015015
Tfdp2
transcription factor Dp-2
chr5_-_56567320 0.00 ENSRNOT00000066081
Topors
TOP1 binding arginine/serine rich protein
chr7_+_42304534 0.00 ENSRNOT00000085097
Kitlg
KIT ligand
chr8_+_79638696 0.00 ENSRNOT00000085959
Dyx1c1
dyslexia susceptibility 1 candidate 1
chr6_-_111417813 0.00 ENSRNOT00000016324
ENSRNOT00000085458
Sptlc2
serine palmitoyltransferase, long chain base subunit 2
chr2_-_9472384 0.00 ENSRNOT00000084295
Adgrv1
adhesion G protein-coupled receptor V1

Network of associatons between targets according to the STRING database.

First level regulatory network of Msx3

PNG image of the network

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 0.1 GO:1903944 establishment of sister chromatid cohesion(GO:0034085) cohesin loading(GO:0071921) regulation of cohesin loading(GO:0071922) regulation of hepatocyte apoptotic process(GO:1903943) negative regulation of hepatocyte apoptotic process(GO:1903944)
0.0 0.1 GO:0061743 motor learning(GO:0061743)
0.0 0.1 GO:0016056 rhodopsin mediated signaling pathway(GO:0016056)
0.0 0.1 GO:0071557 histone H3-K27 demethylation(GO:0071557)
0.0 0.0 GO:0051684 maintenance of Golgi location(GO:0051684)
0.0 0.1 GO:0036123 histone H3-K9 dimethylation(GO:0036123)

Gene overrepresentation in cellular component category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 0.1 GO:0035189 Rb-E2F complex(GO:0035189)
0.0 0.1 GO:0097442 CA3 pyramidal cell dendrite(GO:0097442)

Gene overrepresentation in molecular function category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 0.1 GO:0071558 histone demethylase activity (H3-K27 specific)(GO:0071558)
0.0 0.1 GO:0061676 importin-alpha family protein binding(GO:0061676)
0.0 0.1 GO:0009881 photoreceptor activity(GO:0009881)
0.0 0.1 GO:0009378 four-way junction helicase activity(GO:0009378)

Gene overrepresentation in curated gene sets: REACTOME pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 0.1 REACTOME OPSINS Genes involved in Opsins