GSE49485: Hypoxia transcriptome sequencing of rat brain.

• Motif significance table
• Sample table
• Mean activities
• All promoters sorted by FOV

• Activity table
• Activity delta table
• Regulatory interactions
• Motifs sorted by significance
• Expression table
• Download the whole report

Gene Symbol	Gene ID	Gene Info
Clock Links NCBI RGD Ensembl	ENSRNOG00000002175	clock circadian regulator

Gene	Promoter	Pearson corr. coef.	P-value	Plot
Clock	rn6_v1_chr14_+_34455934_34455934	-0.72	1.7e-01	Click!

Promoter	Log-likelihood	Transcript	Gene	Gene Info
chr1_+_221773254 Show fit	0.08	ENSRNOT00000028646	Rasgrp2 Links NCBI RGD Ensembl Show fit	RAS guanyl releasing protein 2
chr1_-_265506046 Show fit	0.07	ENSRNOT00000023963	Npm3 Links NCBI RGD Ensembl Show fit	nucleophosmin/nucleoplasmin, 3
chr8_-_130127392 Show fit	0.07	ENSRNOT00000026159	Cck Links NCBI RGD Ensembl Show fit	cholecystokinin
chr5_+_165405168 Show fit	0.07	ENSRNOT00000014934	Srm Links NCBI RGD Ensembl Show fit	spermidine synthase
chr8_-_62386264 Show fit	0.06	ENSRNOT00000026165	Cplx3 Links NCBI RGD Ensembl Show fit	complexin 3
chr6_+_42852683 Show fit	0.05	ENSRNOT00000079185	Odc1 Links NCBI RGD Ensembl Show fit	ornithine decarboxylase 1
chr16_+_49462889 Show fit	0.05	ENSRNOT00000039909	Ankrd37 Links NCBI RGD Ensembl Show fit	ankyrin repeat domain 37
chr7_-_82059247 Show fit	0.05	ENSRNOT00000087177	Rspo2 Links NCBI RGD Ensembl Show fit	R-spondin 2
chr10_-_88667345 Show fit	0.05	ENSRNOT00000025518	Kcnh4 Links NCBI RGD Ensembl Show fit	potassium voltage-gated channel subfamily H member 4
chr2_+_127538659 Show fit	0.05	ENSRNOT00000093483 ENSRNOT00000058476	Slc25a31 Links NCBI RGD Ensembl Show fit	solute carrier family 25 member 31
chr3_+_14588870 Show fit	0.05	ENSRNOT00000071712	LOC100912604 Links NCBI RGD Ensembl Show fit	spermidine synthase-like
chr8_-_52814188 Show fit	0.04	ENSRNOT00000087265 ENSRNOT00000047633	Rexo2 Links NCBI RGD Ensembl Show fit	RNA exonuclease 2
chr5_+_74649765 Show fit	0.04	ENSRNOT00000075952	Palm2 Links NCBI RGD Ensembl Show fit	paralemmin 2
chr10_-_83898527 Show fit	0.04	ENSRNOT00000009815	Atp5g1 Links NCBI RGD Ensembl Show fit	ATP synthase, H+ transporting, mitochondrial Fo complex, subunit C1 (subunit 9)
chr5_+_152680407 Show fit	0.04	ENSRNOT00000076864	Stmn1 Links NCBI RGD Ensembl Show fit	stathmin 1
chr6_-_114488880 Show fit	0.04	ENSRNOT00000087560	AC118957.1 Links NCBI RGD Ensembl Show fit
chr18_+_72550219 Show fit	0.04	ENSRNOT00000046847	Smad2 Links NCBI RGD Ensembl Show fit	SMAD family member 2
chr2_+_187893875 Show fit	0.04	ENSRNOT00000093014	Mex3a Links NCBI RGD Ensembl Show fit	mex-3 RNA binding family member A
chr1_-_198120061 Show fit	0.04	ENSRNOT00000026231	Slx1b Links NCBI RGD Ensembl Show fit	SLX1 structure-specific endonuclease subunit homolog B (S. cerevisiae)
chr2_-_187160373 Show fit	0.03	ENSRNOT00000018961	Ntrk1 Links NCBI RGD Ensembl Show fit	neurotrophic receptor tyrosine kinase 1
chr6_+_33786627 Show fit	0.03	ENSRNOT00000008359	Pum2 Links NCBI RGD Ensembl Show fit	pumilio RNA-binding family member 2
chr20_-_43108198 Show fit	0.03	ENSRNOT00000000742	Hdac2 Links NCBI RGD Ensembl Show fit	histone deacetylase 2
chr1_+_198120099 Show fit	0.03	ENSRNOT00000073652	Bola2 Links NCBI RGD Ensembl Show fit	bolA family member 2
chr12_-_3924415 Show fit	0.03	ENSRNOT00000067752	AABR07035074.1 Links NCBI RGD Ensembl Show fit
chr9_+_17817721 Show fit	0.03	ENSRNOT00000086986 ENSRNOT00000026920	Hsp90ab1 Links NCBI RGD Ensembl Show fit	heat shock protein 90 alpha family class B member 1
chr19_+_58565576 Show fit	0.03	ENSRNOT00000026965	Ntpcr Links NCBI RGD Ensembl Show fit	nucleoside-triphosphatase, cancer-related
chr6_+_43829945 Show fit	0.03	ENSRNOT00000086548	Klf11 Links NCBI RGD Ensembl Show fit	Kruppel-like factor 11
chr5_+_140979435 Show fit	0.03	ENSRNOT00000056592	Pabpc4 Links NCBI RGD Ensembl Show fit	poly(A) binding protein, cytoplasmic 4
chr10_+_89236256 Show fit	0.03	ENSRNOT00000027957	Psme3 Links NCBI RGD Ensembl Show fit	proteasome activator subunit 3
chr3_+_71020534 Show fit	0.02	ENSRNOT00000007276	Zc3h15 Links NCBI RGD Ensembl Show fit	zinc finger CCCH-type containing 15
chr11_-_83985385 Show fit	0.02	ENSRNOT00000002334	LOC102551435 Links NCBI RGD Ensembl Show fit	endothelin-converting enzyme 2-like
chr5_-_147953093 Show fit	0.02	ENSRNOT00000075270	Khdrbs1 Links NCBI RGD Ensembl Show fit	KH RNA binding domain containing, signal transduction associated 1
chr1_-_163328591 Show fit	0.02	ENSRNOT00000034843	Tsku Links NCBI RGD Ensembl Show fit	tsukushi, small leucine rich proteoglycan
chr2_-_148891900 Show fit	0.02	ENSRNOT00000018488	Siah2 Links NCBI RGD Ensembl Show fit	siah E3 ubiquitin protein ligase 2
chr10_+_54246250 Show fit	0.02	ENSRNOT00000004880	Rcvrn Links NCBI RGD Ensembl Show fit	recoverin
chr3_+_113415774 Show fit	0.02	ENSRNOT00000056151	Serf2 Links NCBI RGD Ensembl Show fit	small EDRK-rich factor 2
chr8_-_115140080 Show fit	0.02	ENSRNOT00000015851	Acy1 Links NCBI RGD Ensembl Show fit	aminoacylase 1
chr9_+_66495832 Show fit	0.02	ENSRNOT00000022676 ENSRNOT00000091283	Nop58 Links NCBI RGD Ensembl Show fit	NOP58 ribonucleoprotein
chr7_-_27240528 Show fit	0.02	ENSRNOT00000029435 ENSRNOT00000079731	Hsp90b1 Links NCBI RGD Ensembl Show fit	heat shock protein 90 beta family member 1
chr13_+_100129761 Show fit	0.02	ENSRNOT00000038340	Eif3el1 Links NCBI RGD Ensembl Show fit	eukaryotic translation initiation factor 3, subunit E-like 1
chr4_-_78879294 Show fit	0.02	ENSRNOT00000084543	Igf2bp3 Links NCBI RGD Ensembl Show fit	insulin-like growth factor 2 mRNA binding protein 3
chr11_-_60613718 Show fit	0.02	ENSRNOT00000002906	Atg3 Links NCBI RGD Ensembl Show fit	autophagy related 3
chr3_+_61685619 Show fit	0.02	ENSRNOT00000002140	Hoxd1 Links NCBI RGD Ensembl Show fit	homeo box D1
chrX_+_16946207 Show fit	0.01	ENSRNOT00000003981	RGD1563606 Links NCBI RGD Ensembl Show fit	similar to cysteine-rich protein 2
chr10_-_57618527 Show fit	0.01	ENSRNOT00000037517	C1qbp Links NCBI RGD Ensembl Show fit	complement C1q binding protein
chr13_-_90814119 Show fit	0.01	ENSRNOT00000011208	Tagln2 Links NCBI RGD Ensembl Show fit	transgelin 2
chr18_+_36829062 Show fit	0.01	ENSRNOT00000025467 ENSRNOT00000086979	Tcerg1 Links NCBI RGD Ensembl Show fit	transcription elongation regulator 1
chr10_-_11760620 Show fit	0.01	ENSRNOT00000009283	Dnase1 Links NCBI RGD Ensembl Show fit	deoxyribonuclease 1
chr19_+_53055745 Show fit	0.01	ENSRNOT00000074430	Foxl1 Links NCBI RGD Ensembl Show fit	forkhead box L1
chr6_-_55001464 Show fit	0.01	ENSRNOT00000006618	Ahr Links NCBI RGD Ensembl Show fit	aryl hydrocarbon receptor
chr10_-_40375605 Show fit	0.01	ENSRNOT00000014464	Anxa6 Links NCBI RGD Ensembl Show fit	annexin A6
chr10_+_83476107 Show fit	0.01	ENSRNOT00000075733	Phb Links NCBI RGD Ensembl Show fit	prohibitin
chr10_+_57057608 Show fit	0.01	ENSRNOT00000085810 ENSRNOT00000026335	Med11 Links NCBI RGD Ensembl Show fit	mediator complex subunit 11
chr7_+_77966722 Show fit	0.01	ENSRNOT00000006142	Cthrc1 Links NCBI RGD Ensembl Show fit	collagen triple helix repeat containing 1
chr10_+_82352390 Show fit	0.01	ENSRNOT00000004941	Lrrc59 Links NCBI RGD Ensembl Show fit	leucine rich repeat containing 59
chr4_-_77489535 Show fit	0.01	ENSRNOT00000008728	Pdia4 Links NCBI RGD Ensembl Show fit	protein disulfide isomerase family A, member 4
chr8_+_44047592 Show fit	0.01	ENSRNOT00000085084	Zfp202 Links NCBI RGD Ensembl Show fit	zinc finger protein 202
chr2_-_197991198 Show fit	0.01	ENSRNOT00000056322	Ciart Links NCBI RGD Ensembl Show fit	circadian associated repressor of transcription
chr3_+_122803772 Show fit	0.01	ENSRNOT00000009564	Nop56 Links NCBI RGD Ensembl Show fit	NOP56 ribonucleoprotein
chr11_+_47090245 Show fit	0.01	ENSRNOT00000060645	AABR07033987.1 Links NCBI RGD Ensembl Show fit
chr2_-_197991574 Show fit	0.01	ENSRNOT00000085632	Ciart Links NCBI RGD Ensembl Show fit	circadian associated repressor of transcription
chr3_-_159802952 Show fit	0.01	ENSRNOT00000011610	Oser1 Links NCBI RGD Ensembl Show fit	oxidative stress responsive serine-rich 1
chr10_-_32471454 Show fit	0.01	ENSRNOT00000003224	Sgcd Links NCBI RGD Ensembl Show fit	sarcoglycan, delta
chr1_+_127802978 Show fit	0.01	ENSRNOT00000055877	Adamts17 Links NCBI RGD Ensembl Show fit	ADAM metallopeptidase with thrombospondin type 1 motif, 17
chr14_+_36216002 Show fit	0.01	ENSRNOT00000038506	Scfd2 Links NCBI RGD Ensembl Show fit	sec1 family domain containing 2
chr9_-_16979044 Show fit	0.01	ENSRNOT00000073191 ENSRNOT00000025335	Zfp318 Links NCBI RGD Ensembl Show fit	zinc finger protein 318
chr12_+_21981755 Show fit	0.01	ENSRNOT00000001871	LOC100910540 Links NCBI RGD Ensembl Show fit	7SK snRNA methylphosphate capping enzyme-like
chr9_-_61690956 Show fit	0.01	ENSRNOT00000066589	Hspd1 Links NCBI RGD Ensembl Show fit	heat shock protein family D member 1
chr6_+_80220547 Show fit	0.01	ENSRNOT00000086221 ENSRNOT00000077435 ENSRNOT00000059318 ENSRNOT00000089010	Mia2 Links NCBI RGD Ensembl Show fit	melanoma inhibitory activity 2
chr10_+_91710495 Show fit	0.01	ENSRNOT00000033276	Rprml Links NCBI RGD Ensembl Show fit	reprimo-like
chr14_-_33580566 Show fit	0.01	ENSRNOT00000063942	Paics Links NCBI RGD Ensembl Show fit	phosphoribosylaminoimidazole carboxylase and phosphoribosylaminoimidazolesuccinocarboxamide synthase
chr3_-_122947075 Show fit	0.01	ENSRNOT00000082369	Pced1a Links NCBI RGD Ensembl Show fit	PC-esterase domain containing 1A
chr10_+_46783979 Show fit	0.01	ENSRNOT00000005237	Gid4 Links NCBI RGD Ensembl Show fit	GID complex subunit 4
chr16_+_7103998 Show fit	0.00	ENSRNOT00000016581	Pbrm1 Links NCBI RGD Ensembl Show fit	polybromo 1
chr5_-_58124681 Show fit	0.00	ENSRNOT00000019795	Sigmar1 Links NCBI RGD Ensembl Show fit	sigma non-opioid intracellular receptor 1
chr3_-_163935617 Show fit	0.00	ENSRNOT00000074023	Kcnb1 Links NCBI RGD Ensembl Show fit	potassium voltage-gated channel subfamily B member 1
chr5_+_60250546 Show fit	0.00	ENSRNOT00000017707	Zcchc7 Links NCBI RGD Ensembl Show fit	zinc finger CCHC-type containing 7
chr8_+_22050222 Show fit	0.00	ENSRNOT00000028096	Icam5 Links NCBI RGD Ensembl Show fit	intercellular adhesion molecule 5
chr10_-_57005272 Show fit	0.00	ENSRNOT00000026102	Pelp1 Links NCBI RGD Ensembl Show fit	proline, glutamate and leucine rich protein 1
chr10_-_37455022 Show fit	0.00	ENSRNOT00000016742	LOC103694902 Links NCBI RGD Ensembl Show fit	ubiquitin-conjugating enzyme E2 B
chr14_-_100372760 Show fit	0.00	ENSRNOT00000007824	Pno1 Links NCBI RGD Ensembl Show fit	partner of NOB1 homolog
chr3_+_11424099 Show fit	0.00	ENSRNOT00000019184	Ptges2 Links NCBI RGD Ensembl Show fit	prostaglandin E synthase 2
chr9_+_15393330 Show fit	0.00	ENSRNOT00000075630	Bysl Links NCBI RGD Ensembl Show fit	bystin-like

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Gene overrepresentation in biological process category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.1	GO:0008295	spermidine biosynthetic process(GO:0008295)
0.0	0.0	GO:0006344	maintenance of chromatin silencing(GO:0006344)
0.0	0.0	GO:0042489	negative regulation of odontogenesis of dentin-containing tooth(GO:0042489)
0.0	0.1	GO:0033387	putrescine biosynthetic process(GO:0009446) putrescine biosynthetic process from ornithine(GO:0033387)
0.0	0.0	GO:0070495	regulation of thrombin receptor signaling pathway(GO:0070494) negative regulation of thrombin receptor signaling pathway(GO:0070495)

Gene overrepresentation in cellular component category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.0	GO:0033557	Slx1-Slx4 complex(GO:0033557)

Gene overrepresentation in molecular function category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.1	GO:0004586	ornithine decarboxylase activity(GO:0004586)
0.0	0.0	GO:0035851	Krueppel-associated box domain binding(GO:0035851)