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GSE49485: Hypoxia transcriptome sequencing of rat brain.

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Results for Rfx5

Z-value: 0.58

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Transcription factors associated with Rfx5

Gene Symbol Gene ID Gene Info
Rfx5
ENSRNOG00000021012 regulatory factor X5

Activity-expression correlation:

GenePromoterPearson corr. coef.P-valuePlot
Rfx5rn6_v1_chr2_+_196120580_196120580-0.866.3e-02Click!

Activity profile of Rfx5 motif

Sorted Z-values of Rfx5 motif

Top targets:  

Promoter Log-likelihood Transcript Gene Gene Info
chr8_-_55491152 0.24 ENSRNOT00000014965
LOC100359479
rCG58364-like
chr20_-_3978845 0.24 ENSRNOT00000000532
Psmb9
proteasome subunit beta 9
chr1_-_226526959 0.22 ENSRNOT00000028003
Ppp1r32
protein phosphatase 1, regulatory subunit 32
chr9_-_15274917 0.22 ENSRNOT00000019650
Pgc
progastricsin
chr20_+_3979035 0.20 ENSRNOT00000000529
Tap1
transporter 1, ATP binding cassette subfamily B member
chr20_-_5244386 0.20 ENSRNOT00000070886
RT1-DMa
RT1 class II, locus DMa
chr20_-_5227620 0.19 ENSRNOT00000086240
RT1-DMb
RT1 class II, locus DMb
chr20_+_3935529 0.19 ENSRNOT00000072458
LOC108348072
class II histocompatibility antigen, M alpha chain
chr20_-_5234290 0.19 ENSRNOT00000073474
RT1-DMb
RT1 class II, locus DMb
chr20_+_3945601 0.18 ENSRNOT00000075342
RT1-DMb
RT1 class II, locus DMb
chr20_+_4178686 0.17 ENSRNOT00000080641
Tesb
testis specific basic protein
chr10_+_71217966 0.15 ENSRNOT00000076192
Hnf1b
HNF1 homeobox B
chr20_+_4087618 0.15 ENSRNOT00000000522
ENSRNOT00000060327
ENSRNOT00000080590
RT1-Db1
RT1 class II, locus Db1
chr20_+_5414448 0.14 ENSRNOT00000078972
ENSRNOT00000080900
RT1-A1
RT1 class Ia, locus A1
chr1_+_142951094 0.14 ENSRNOT00000077441
Slc28a1
solute carrier family 28 member 1
chrX_+_131617798 0.14 ENSRNOT00000074384
Prr32
proline rich 32
chr18_+_56071478 0.14 ENSRNOT00000025344
ENSRNOT00000025354
Cd74
CD74 molecule
chr1_+_100473643 0.13 ENSRNOT00000026379
Josd2
Josephin domain containing 2
chr20_+_4043741 0.13 ENSRNOT00000000525
RT1-Bb
RT1 class II, locus Bb
chr19_-_26181449 0.12 ENSRNOT00000036953
LOC685513
similar to Guanine nucleotide-binding protein G(I)/G(S)/G(O) gamma-12 subunit precursor
chr9_-_121713091 0.11 ENSRNOT00000073432
Adcyap1
adenylate cyclase activating polypeptide 1
chr20_+_5374985 0.11 ENSRNOT00000052270
RT1-A2
RT1 class Ia, locus A2
chr10_+_94466523 0.10 ENSRNOT00000014867
Tcam1
testicular cell adhesion molecule 1
chr20_-_1818800 0.10 ENSRNOT00000000990
RT1-M3-1
RT1 class Ib, locus M3, gene 1
chr19_+_37830917 0.09 ENSRNOT00000025608
Nutf2
nuclear transport factor 2
chr3_+_114087287 0.09 ENSRNOT00000023017
B2m
beta-2 microglobulin
chr2_-_89310946 0.08 ENSRNOT00000015195
Ralyl
RALY RNA binding protein-like
chr10_+_49020454 0.07 ENSRNOT00000003402
ENSRNOT00000067379
LOC108348055
B9 domain-containing protein 1
chr10_+_47785033 0.07 ENSRNOT00000075073
ENSRNOT00000084944
B9d1
B9 domain containing 1
chr20_-_4896970 0.07 ENSRNOT00000061114
ENSRNOT00000060980
RT1-CE7
RT1-CE5
RT1 class I, locus CE7
RT1 class I, locus CE5
chr1_-_101085884 0.06 ENSRNOT00000085352
Rcn3
reticulocalbin 3
chr1_+_256035866 0.06 ENSRNOT00000079726
Kif11
kinesin family member 11
chr2_-_256154584 0.06 ENSRNOT00000072487
AABR07013776.1

chr20_-_157861 0.06 ENSRNOT00000084461
RT1-CE10
RT1 class I, locus CE10
chr20_-_3166569 0.06 ENSRNOT00000091390
AABR07044362.1

chr7_+_54859104 0.05 ENSRNOT00000087341
Caps2
calcyphosine 2
chr19_-_25955371 0.05 ENSRNOT00000004042
ENSRNOT00000084123
Rad23a
RAD23 homolog A, nucleotide excision repair protein
chr13_-_36290531 0.05 ENSRNOT00000071388
Steap3
STEAP3 metalloreductase
chr10_-_14247886 0.05 ENSRNOT00000020504
Nubp2
nucleotide binding protein 2
chr20_-_157665 0.05 ENSRNOT00000048858
ENSRNOT00000079494
RT1-CE10
RT1 class I, locus CE10
chrX_+_37329779 0.05 ENSRNOT00000038352
ENSRNOT00000088802
Pdha1
pyruvate dehydrogenase (lipoamide) alpha 1
chr7_+_117420788 0.05 ENSRNOT00000049198
Wdr97
WD repeat domain 97
chr8_+_56411911 0.05 ENSRNOT00000039083
LOC100359687
mitochondrial ribosomal protein L1-like
chr7_+_54859326 0.05 ENSRNOT00000039141
Caps2
calcyphosine 2
chr4_-_66380734 0.04 ENSRNOT00000009194
Klrg2
killer cell lectin like receptor G2
chr13_-_71282802 0.04 ENSRNOT00000025544
Rgsl2h
regulator of G-protein signaling like 2 homolog (mouse)
chr19_-_37528011 0.04 ENSRNOT00000059628
Agrp
agouti related neuropeptide
chr3_-_123997277 0.04 ENSRNOT00000058238
RGD1564425
similar to Proteasome subunit beta type 3 (Proteasome theta chain)
chr10_-_72196437 0.03 ENSRNOT00000029769
Pigw
phosphatidylinositol glycan anchor biosynthesis, class W
chr13_-_72789841 0.03 ENSRNOT00000004694
Mr1
major histocompatibility complex, class I-related
chr20_+_4039413 0.03 ENSRNOT00000082136
RT1-Bb
RT1 class II, locus Bb
chr11_-_67618704 0.03 ENSRNOT00000042208
Ccdc58
coiled-coil domain containing 58
chr12_+_37829579 0.03 ENSRNOT00000084587
Pitpnm2
phosphatidylinositol transfer protein, membrane-associated 2
chr14_+_17534412 0.03 ENSRNOT00000079304
ENSRNOT00000046771
Cdkl2
cyclin dependent kinase like 2
chr5_-_135472116 0.03 ENSRNOT00000022170
Nasp
nuclear autoantigenic sperm protein
chr1_+_189550354 0.02 ENSRNOT00000083153
Exnef
exonuclease NEF-sp
chr11_+_47243342 0.02 ENSRNOT00000041116
Nfkbiz
NFKB inhibitor zeta
chr10_-_40201992 0.02 ENSRNOT00000075311
Lyrm7
LYR motif containing 7
chr1_-_170594168 0.01 ENSRNOT00000026280
Tpp1
tripeptidyl peptidase 1
chr2_-_149333597 0.01 ENSRNOT00000066948
P2ry14
purinergic receptor P2Y14
chr4_+_181428664 0.01 ENSRNOT00000002518
Rep15
RAB15 effector protein
chr11_+_67618625 0.01 ENSRNOT00000087054
ENSRNOT00000043230
ENSRNOT00000041844
Fam162a
family with sequence similarity 162, member A
chr3_+_159823878 0.01 ENSRNOT00000011748
Gdap1l1
ganglioside-induced differentiation-associated protein 1-like 1
chr15_-_20032191 0.00 ENSRNOT00000032704
Ddhd1
DDHD domain containing 1
chr20_-_3401273 0.00 ENSRNOT00000089257
ENSRNOT00000078451
ENSRNOT00000001085
Nrm
nurim (nuclear envelope membrane protein)
chr3_-_72289310 0.00 ENSRNOT00000038250
Rtn4rl2
reticulon 4 receptor-like 2
chr7_-_29701586 0.00 ENSRNOT00000009084
ENSRNOT00000089269
Ano4
anoctamin 4

Network of associatons between targets according to the STRING database.

First level regulatory network of Rfx5

PNG image of the network

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Log-likelihood per target  Total log-likelihood Term Description
0.2 0.9 GO:0002503 MHC class II protein complex assembly(GO:0002399) peptide antigen assembly with MHC class II protein complex(GO:0002503)
0.1 0.2 GO:0002481 antigen processing and presentation of exogenous peptide antigen via MHC class Ib(GO:0002477) antigen processing and presentation of exogenous protein antigen via MHC class Ib, TAP-dependent(GO:0002481)
0.1 0.2 GO:0046967 cytosol to ER transport(GO:0046967) peptide antigen transport(GO:0046968)
0.1 0.2 GO:1901423 response to benzene(GO:1901423)
0.1 0.2 GO:0002225 positive regulation of antimicrobial peptide production(GO:0002225) positive regulation of antibacterial peptide production(GO:0002803)
0.1 0.2 GO:0035565 regulation of pronephros size(GO:0035565) pronephric nephron tubule development(GO:0039020) hepatoblast differentiation(GO:0061017)
0.0 0.1 GO:0002462 tolerance induction to nonself antigen(GO:0002462)
0.0 0.2 GO:0002343 peripheral B cell selection(GO:0002343) B cell affinity maturation(GO:0002344)
0.0 0.1 GO:0002877 regulation of acute inflammatory response to non-antigenic stimulus(GO:0002877)
0.0 0.1 GO:1904823 purine nucleobase transmembrane transport(GO:1904823)
0.0 0.1 GO:0002906 mature B cell apoptotic process(GO:0002901) regulation of mature B cell apoptotic process(GO:0002905) negative regulation of mature B cell apoptotic process(GO:0002906)
0.0 0.1 GO:0090204 protein localization to nuclear pore(GO:0090204)
0.0 0.1 GO:0019885 antigen processing and presentation of endogenous peptide antigen via MHC class I(GO:0019885)
0.0 0.1 GO:1902167 positive regulation of intrinsic apoptotic signaling pathway in response to DNA damage by p53 class mediator(GO:1902167)
0.0 0.0 GO:0061732 mitochondrial acetyl-CoA biosynthetic process from pyruvate(GO:0061732)
0.0 0.1 GO:0046602 regulation of mitotic centrosome separation(GO:0046602)

Gene overrepresentation in cellular component category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 1.4 GO:0042613 MHC class II protein complex(GO:0042613)
0.0 0.2 GO:1990111 spermatoproteasome complex(GO:1990111)
0.0 0.6 GO:0042611 MHC protein complex(GO:0042611)
0.0 0.2 GO:0042825 TAP complex(GO:0042825)
0.0 0.0 GO:0005967 mitochondrial pyruvate dehydrogenase complex(GO:0005967)
0.0 0.1 GO:0044613 nuclear pore central transport channel(GO:0044613)

Gene overrepresentation in molecular function category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.2 GO:0046980 peptide antigen-transporting ATPase activity(GO:0015433) tapasin binding(GO:0046980)
0.0 1.0 GO:0023026 MHC class II protein complex binding(GO:0023026)
0.0 0.1 GO:0015389 pyrimidine- and adenine-specific:sodium symporter activity(GO:0015389)
0.0 0.1 GO:0008158 hedgehog receptor activity(GO:0008158)
0.0 0.1 GO:0046979 TAP binding(GO:0046977) TAP1 binding(GO:0046978) TAP2 binding(GO:0046979)
0.0 0.1 GO:0030881 beta-2-microglobulin binding(GO:0030881)
0.0 0.0 GO:0004739 pyruvate dehydrogenase (acetyl-transferring) activity(GO:0004739)
0.0 0.1 GO:0005432 calcium:sodium antiporter activity(GO:0005432)
0.0 0.2 GO:1990405 protein antigen binding(GO:1990405)
0.0 0.1 GO:0000293 ferric-chelate reductase activity(GO:0000293)
0.0 0.2 GO:0070628 proteasome binding(GO:0070628)

Gene overrepresentation in curated gene sets: REACTOME pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 0.1 REACTOME ENDOSOMAL VACUOLAR PATHWAY Genes involved in Endosomal/Vacuolar pathway
0.0 0.2 REACTOME ANTIGEN PRESENTATION FOLDING ASSEMBLY AND PEPTIDE LOADING OF CLASS I MHC Genes involved in Antigen Presentation: Folding, assembly and peptide loading of class I MHC