GSE49485: Hypoxia transcriptome sequencing of rat brain.
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
Rfx5 | rn6_v1_chr2_+_196120580_196120580 | -0.86 | 6.3e-02 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr8_-_55491152 Show fit | 0.24 |
ENSRNOT00000014965
|
rCG58364-like |
|
chr20_-_3978845 Show fit | 0.24 |
ENSRNOT00000000532
|
proteasome subunit beta 9 |
|
chr1_-_226526959 Show fit | 0.22 |
ENSRNOT00000028003
|
protein phosphatase 1, regulatory subunit 32 |
|
chr9_-_15274917 Show fit | 0.22 |
ENSRNOT00000019650
|
progastricsin |
|
chr20_+_3979035 Show fit | 0.20 |
ENSRNOT00000000529
|
transporter 1, ATP binding cassette subfamily B member |
|
chr20_-_5244386 Show fit | 0.20 |
ENSRNOT00000070886
|
RT1 class II, locus DMa |
|
chr20_-_5227620 Show fit | 0.19 |
ENSRNOT00000086240
|
RT1 class II, locus DMb |
|
chr20_+_3935529 Show fit | 0.19 |
ENSRNOT00000072458
|
class II histocompatibility antigen, M alpha chain |
|
chr20_-_5234290 Show fit | 0.19 |
ENSRNOT00000073474
|
RT1 class II, locus DMb |
|
chr20_+_3945601 Show fit | 0.18 |
ENSRNOT00000075342
|
RT1 class II, locus DMb |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.2 | 0.9 | GO:0002503 | MHC class II protein complex assembly(GO:0002399) peptide antigen assembly with MHC class II protein complex(GO:0002503) |
0.1 | 0.2 | GO:0002481 | antigen processing and presentation of exogenous peptide antigen via MHC class Ib(GO:0002477) antigen processing and presentation of exogenous protein antigen via MHC class Ib, TAP-dependent(GO:0002481) |
0.1 | 0.2 | GO:0046967 | cytosol to ER transport(GO:0046967) peptide antigen transport(GO:0046968) |
0.1 | 0.2 | GO:1901423 | response to benzene(GO:1901423) |
0.1 | 0.2 | GO:0002225 | positive regulation of antimicrobial peptide production(GO:0002225) positive regulation of antibacterial peptide production(GO:0002803) |
0.1 | 0.2 | GO:0035565 | regulation of pronephros size(GO:0035565) pronephric nephron tubule development(GO:0039020) hepatoblast differentiation(GO:0061017) |
0.0 | 0.2 | GO:0002343 | peripheral B cell selection(GO:0002343) B cell affinity maturation(GO:0002344) |
0.0 | 0.1 | GO:0002462 | tolerance induction to nonself antigen(GO:0002462) |
0.0 | 0.1 | GO:0002877 | regulation of acute inflammatory response to non-antigenic stimulus(GO:0002877) |
0.0 | 0.1 | GO:1904823 | purine nucleobase transmembrane transport(GO:1904823) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 1.4 | GO:0042613 | MHC class II protein complex(GO:0042613) |
0.0 | 0.6 | GO:0042611 | MHC protein complex(GO:0042611) |
0.0 | 0.2 | GO:1990111 | spermatoproteasome complex(GO:1990111) |
0.0 | 0.2 | GO:0042825 | TAP complex(GO:0042825) |
0.0 | 0.1 | GO:0044613 | nuclear pore central transport channel(GO:0044613) |
0.0 | 0.0 | GO:0005967 | mitochondrial pyruvate dehydrogenase complex(GO:0005967) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 1.0 | GO:0023026 | MHC class II protein complex binding(GO:0023026) |
0.1 | 0.2 | GO:0046980 | peptide antigen-transporting ATPase activity(GO:0015433) tapasin binding(GO:0046980) |
0.0 | 0.2 | GO:1990405 | protein antigen binding(GO:1990405) |
0.0 | 0.2 | GO:0070628 | proteasome binding(GO:0070628) |
0.0 | 0.1 | GO:0015389 | pyrimidine- and adenine-specific:sodium symporter activity(GO:0015389) |
0.0 | 0.1 | GO:0008158 | hedgehog receptor activity(GO:0008158) |
0.0 | 0.1 | GO:0046979 | TAP binding(GO:0046977) TAP1 binding(GO:0046978) TAP2 binding(GO:0046979) |
0.0 | 0.1 | GO:0030881 | beta-2-microglobulin binding(GO:0030881) |
0.0 | 0.1 | GO:0005432 | calcium:sodium antiporter activity(GO:0005432) |
0.0 | 0.1 | GO:0000293 | ferric-chelate reductase activity(GO:0000293) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 0.2 | REACTOME ANTIGEN PRESENTATION FOLDING ASSEMBLY AND PEPTIDE LOADING OF CLASS I MHC | Genes involved in Antigen Presentation: Folding, assembly and peptide loading of class I MHC |
0.0 | 0.1 | REACTOME ENDOSOMAL VACUOLAR PATHWAY | Genes involved in Endosomal/Vacuolar pathway |