GSE49485: Hypoxia transcriptome sequencing of rat brain.

• Motif significance table
• Sample table
• Mean activities
• All promoters sorted by FOV

• Activity table
• Activity delta table
• Regulatory interactions
• Motifs sorted by significance
• Expression table
• Download the whole report

Gene Symbol	Gene ID	Gene Info
Onecut1 Links NCBI RGD Ensembl	ENSRNOG00000008095	one cut homeobox 1
Cux2 Links NCBI RGD Ensembl	ENSRNOG00000001259	cut-like homeobox 2

Gene	Promoter	Pearson corr. coef.	P-value	Plot
Cux2	rn6_v1_chr12_+_40018937_40018937	-0.71	1.8e-01	Click!
Onecut1	rn6_v1_chr8_+_81766041_81766041	-0.65	2.3e-01	Click!

Promoter	Log-likelihood	Transcript	Gene	Gene Info
chr6_-_108415093 Show fit	0.02	ENSRNOT00000031650	Syndig1l Links NCBI RGD Ensembl Show fit	synapse differentiation inducing 1-like
chr6_+_135856218 Show fit	0.02	ENSRNOT00000066715	RGD1560608 Links NCBI RGD Ensembl Show fit	similar to novel protein
chr15_+_50891127 Show fit	0.02	ENSRNOT00000020728	Stc1 Links NCBI RGD Ensembl Show fit	stanniocalcin 1
chr4_-_44136815 Show fit	0.02	ENSRNOT00000086810	Tfec Links NCBI RGD Ensembl Show fit	transcription factor EC
chr6_+_8669722 Show fit	0.02	ENSRNOT00000048550	Camkmt Links NCBI RGD Ensembl Show fit	calmodulin-lysine N-methyltransferase
chr5_+_148051126 Show fit	0.02	ENSRNOT00000074415	Ptp4a2 Links NCBI RGD Ensembl Show fit	protein tyrosine phosphatase type IVA, member 2
chrX_-_138148967 Show fit	0.02	ENSRNOT00000033968	Frmd7 Links NCBI RGD Ensembl Show fit	FERM domain containing 7
chr2_-_96032722 Show fit	0.01	ENSRNOT00000015746	LOC100360846 Links NCBI RGD Ensembl Show fit	proteasome subunit beta type 6-like
chr17_-_9234766 Show fit	0.01	ENSRNOT00000015893	AABR07026997.1 Links NCBI RGD Ensembl Show fit
chr2_-_98610368 Show fit	0.01	ENSRNOT00000011641	Zfhx4 Links NCBI RGD Ensembl Show fit	zinc finger homeobox 4
chr14_-_34218961 Show fit	0.01	ENSRNOT00000072588	LOC686911 Links NCBI RGD Ensembl Show fit	similar to Exocyst complex component 1 (Exocyst complex component Sec3)
chr4_-_50312608 Show fit	0.01	ENSRNOT00000010019	Fezf1 Links NCBI RGD Ensembl Show fit	Fez family zinc finger 1
chr3_-_47025128 Show fit	0.01	ENSRNOT00000011682	Rbms1 Links NCBI RGD Ensembl Show fit	RNA binding motif, single stranded interacting protein 1
chr2_+_114413410 Show fit	0.01	ENSRNOT00000015866	Slc2a2 Links NCBI RGD Ensembl Show fit	solute carrier family 2 member 2
chrX_+_131381134 Show fit	0.01	ENSRNOT00000007474	AABR07041481.1 Links NCBI RGD Ensembl Show fit
chr4_-_170912629 Show fit	0.01	ENSRNOT00000055691	Erp27 Links NCBI RGD Ensembl Show fit	endoplasmic reticulum protein 27
chr17_+_9736577 Show fit	0.01	ENSRNOT00000066586	F12 Links NCBI RGD Ensembl Show fit	coagulation factor XII
chr18_-_59819113 Show fit	0.01	ENSRNOT00000065939	RGD1562699 Links NCBI RGD Ensembl Show fit	RGD1562699
chr18_-_52047816 Show fit	0.01	ENSRNOT00000018368 ENSRNOT00000077491	LOC100174910 Links NCBI RGD Ensembl Show fit	glutaredoxin-like protein
chr19_+_60017746 Show fit	0.01	ENSRNOT00000042623	Pard3 Links NCBI RGD Ensembl Show fit	par-3 family cell polarity regulator
chr19_+_23389375 Show fit	0.01	ENSRNOT00000018629	Sall1 Links NCBI RGD Ensembl Show fit	spalt-like transcription factor 1
chr3_-_72171078 Show fit	0.01	ENSRNOT00000009817	Serping1 Links NCBI RGD Ensembl Show fit	serpin family G member 1
chr3_+_37545238 Show fit	0.01	ENSRNOT00000070792	Tnfaip6 Links NCBI RGD Ensembl Show fit	TNF alpha induced protein 6
chr5_-_99033107 Show fit	0.01	ENSRNOT00000041306	Hspa8 Links NCBI RGD Ensembl Show fit	heat shock protein family A (Hsp70) member 8
chr17_-_42267079 Show fit	0.01	ENSRNOT00000059564	LOC100911664 Links NCBI RGD Ensembl Show fit	uncharacterized LOC100911664
chr11_+_13499164 Show fit	0.01	ENSRNOT00000013159	LOC680121 Links NCBI RGD Ensembl Show fit	similar to heat shock protein 8
chr3_-_165537940 Show fit	0.01	ENSRNOT00000071119 ENSRNOT00000070964	Sall4 Links NCBI RGD Ensembl Show fit	spalt-like transcription factor 4
chr5_-_124403195 Show fit	0.01	ENSRNOT00000067850	C8a Links NCBI RGD Ensembl Show fit	complement C8 alpha chain
chr3_+_307204 Show fit	0.01	ENSRNOT00000062080	Nxph2 Links NCBI RGD Ensembl Show fit	neurexophilin 2
chr20_+_26988774 Show fit	0.01	ENSRNOT00000090083	Mypn Links NCBI RGD Ensembl Show fit	myopalladin
chr7_-_144837583 Show fit	0.01	ENSRNOT00000055289	Cbx5 Links NCBI RGD Ensembl Show fit	chromobox 5
chr10_-_86930947 Show fit	0.01	ENSRNOT00000081440	Top2a Links NCBI RGD Ensembl Show fit	topoisomerase (DNA) II alpha
chr17_+_9736786 Show fit	0.01	ENSRNOT00000081920	F12 Links NCBI RGD Ensembl Show fit	coagulation factor XII
chrX_-_15467875 Show fit	0.01	ENSRNOT00000011207	Pim2 Links NCBI RGD Ensembl Show fit	Pim-2 proto-oncogene, serine/threonine kinase
chrM_-_14061 Show fit	0.01	ENSRNOT00000051268	Mt-nd6 Links NCBI RGD Ensembl Show fit	mitochondrially encoded NADH dehydrogenase 6
chr7_-_34406318 Show fit	0.01	ENSRNOT00000007331	Amdhd1 Links NCBI RGD Ensembl Show fit	amidohydrolase domain containing 1
chr1_+_280383579 Show fit	0.01	ENSRNOT00000064022 ENSRNOT00000042977	Kcnk18 Links NCBI RGD Ensembl Show fit	potassium two pore domain channel subfamily K member 18
chr4_-_10269748 Show fit	0.00	ENSRNOT00000074662	Fam185a Links NCBI RGD Ensembl Show fit	family with sequence similarity 185, member A
chr1_+_266255797 Show fit	0.00	ENSRNOT00000027047	Trim8 Links NCBI RGD Ensembl Show fit	tripartite motif-containing 8
chr1_+_260289589 Show fit	0.00	ENSRNOT00000051058	Dntt Links NCBI RGD Ensembl Show fit	DNA nucleotidylexotransferase
chr9_-_5330815 Show fit	0.00	ENSRNOT00000014548	Slc5a7 Links NCBI RGD Ensembl Show fit	solute carrier family 5 member 7
chr8_-_1450138 Show fit	0.00	ENSRNOT00000008062	Aasdhppt Links NCBI RGD Ensembl Show fit	aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase
chr6_+_22696397 Show fit	0.00	ENSRNOT00000011630	Alk Links NCBI RGD Ensembl Show fit	anaplastic lymphoma receptor tyrosine kinase
chr6_-_67085390 Show fit	0.00	ENSRNOT00000083277	Nova1 Links NCBI RGD Ensembl Show fit	NOVA alternative splicing regulator 1
chr14_-_44225713 Show fit	0.00	ENSRNOT00000049161	LOC680579 Links NCBI RGD Ensembl Show fit	similar to ribosomal protein L14
chr11_-_35749464 Show fit	0.00	ENSRNOT00000078818 ENSRNOT00000078425	Erg Links NCBI RGD Ensembl Show fit	ERG, ETS transcription factor
chr5_+_57845819 Show fit	0.00	ENSRNOT00000017712	Nudt2 Links NCBI RGD Ensembl Show fit	nudix hydrolase 2
chr14_-_64476796 Show fit	0.00	ENSRNOT00000029104	Gba3 Links NCBI RGD Ensembl Show fit	glucosidase, beta, acid 3
chrX_+_124894466 Show fit	0.00	ENSRNOT00000080894	Mcts1 Links NCBI RGD Ensembl Show fit	MCTS1, re-initiation and release factor
chr2_-_258932200 Show fit	0.00	ENSRNOT00000045905	Adgrl2 Links NCBI RGD Ensembl Show fit	adhesion G protein-coupled receptor L2
chrX_-_72370044 Show fit	0.00	ENSRNOT00000004224	Hdac8 Links NCBI RGD Ensembl Show fit	histone deacetylase 8
chr3_-_2444281 Show fit	0.00	ENSRNOT00000013863	Tubb4b Links NCBI RGD Ensembl Show fit	tubulin, beta 4B class IVb
chr7_-_102298522 Show fit	0.00	ENSRNOT00000006273	A1bg Links NCBI RGD Ensembl Show fit	alpha-1-B glycoprotein
chr10_+_84135116 Show fit	0.00	ENSRNOT00000031035	Hoxb7 Links NCBI RGD Ensembl Show fit	homeo box B7
chr15_-_33752665 Show fit	0.00	ENSRNOT00000034102	Zfhx2 Links NCBI RGD Ensembl Show fit	zinc finger homeobox 2
chr2_-_95472115 Show fit	0.00	ENSRNOT00000015720	Stmn2 Links NCBI RGD Ensembl Show fit	stathmin 2
chr11_-_17340373 Show fit	0.00	ENSRNOT00000089762	AABR07033324.1 Links NCBI RGD Ensembl Show fit
chr2_-_252451999 Show fit	0.00	ENSRNOT00000021861	Dnase2b Links NCBI RGD Ensembl Show fit	deoxyribonuclease 2 beta
chr8_-_46675544 Show fit	0.00	ENSRNOT00000052293	Tecta Links NCBI RGD Ensembl Show fit	tectorin alpha
chr5_-_28164326 Show fit	0.00	ENSRNOT00000088165	Slc26a7 Links NCBI RGD Ensembl Show fit	solute carrier family 26 member 7
chr1_+_214375515 Show fit	0.00	ENSRNOT00000024863	Taldo1 Links NCBI RGD Ensembl Show fit	transaldolase 1
chr3_-_81304181 Show fit	0.00	ENSRNOT00000079746	Mapk8ip1 Links NCBI RGD Ensembl Show fit	mitogen-activated protein kinase 8 interacting protein 1
chr20_+_25990304 Show fit	0.00	ENSRNOT00000033980	Lrrtm3 Links NCBI RGD Ensembl Show fit	leucine rich repeat transmembrane neuronal 3
chr10_+_65767053 Show fit	0.00	ENSRNOT00000078897	Vtn Links NCBI RGD Ensembl Show fit	vitronectin
chrX_-_77675487 Show fit	0.00	ENSRNOT00000042799	Cysltr1 Links NCBI RGD Ensembl Show fit	cysteinyl leukotriene receptor 1
chr18_-_77579969 Show fit	0.00	ENSRNOT00000034896	Sall3 Links NCBI RGD Ensembl Show fit	spalt-like transcription factor 3
chr1_+_1897338 Show fit	0.00	ENSRNOT00000021437	Ppil4 Links NCBI RGD Ensembl Show fit	peptidylprolyl isomerase like 4
chrM_+_14136 Show fit	0.00	ENSRNOT00000042098	Mt-cyb Links NCBI RGD Ensembl Show fit	mitochondrially encoded cytochrome b
chr2_+_22909569 Show fit	0.00	ENSRNOT00000073871	Homer1 Links NCBI RGD Ensembl Show fit	homer scaffolding protein 1
chr14_-_23604834 Show fit	0.00	ENSRNOT00000002760	Stap1 Links NCBI RGD Ensembl Show fit	signal transducing adaptor family member 1
chr7_-_119689938 Show fit	0.00	ENSRNOT00000000200	Tmprss6 Links NCBI RGD Ensembl Show fit	transmembrane protease, serine 6
chr2_-_235177275 Show fit	0.00	ENSRNOT00000093153	LOC103691699 Links NCBI RGD Ensembl Show fit	uncharacterized LOC103691699
chr10_+_89286047 Show fit	0.00	ENSRNOT00000085831	G6pc Links NCBI RGD Ensembl Show fit	glucose-6-phosphatase, catalytic subunit
chr2_-_238246931 Show fit	0.00	ENSRNOT00000086303	Gstcd Links NCBI RGD Ensembl Show fit	glutathione S-transferase, C-terminal domain containing
chr1_+_83714347 Show fit	0.00	ENSRNOT00000085245	Cyp2a1 Links NCBI RGD Ensembl Show fit	cytochrome P450, family 2, subfamily a, polypeptide 1
chr6_+_136004214 Show fit	0.00	ENSRNOT00000013695	NEWGENE_619861 Links NCBI RGD Ensembl Show fit	eukaryotic translation initiation factor 5
chr15_+_44799334 Show fit	0.00	ENSRNOT00000018599	Nefl Links NCBI RGD Ensembl Show fit	neurofilament light
chr8_+_117068582 Show fit	0.00	ENSRNOT00000073559	Amt Links NCBI RGD Ensembl Show fit	aminomethyltransferase
chr6_-_72786830 Show fit	0.00	ENSRNOT00000009020	Dtd2 Links NCBI RGD Ensembl Show fit	D-tyrosyl-tRNA deacylase 2
chr2_+_22910236 Show fit	0.00	ENSRNOT00000078266	Homer1 Links NCBI RGD Ensembl Show fit	homer scaffolding protein 1
chr2_+_68820615 Show fit	0.00	ENSRNOT00000087007 ENSRNOT00000089504	Egf Links NCBI RGD Ensembl Show fit	epidermal growth factor
chr2_+_143475323 Show fit	0.00	ENSRNOT00000044028 ENSRNOT00000015437	Trpc4 Links NCBI RGD Ensembl Show fit	transient receptor potential cation channel, subfamily C, member 4
chr7_+_34533543 Show fit	0.00	ENSRNOT00000007412 ENSRNOT00000084185	Ntn4 Links NCBI RGD Ensembl Show fit	netrin 4
chr5_-_62621737 Show fit	0.00	ENSRNOT00000011573	Gabbr2 Links NCBI RGD Ensembl Show fit	gamma-aminobutyric acid type B receptor subunit 2
chr6_+_109043880 Show fit	0.00	ENSRNOT00000008730	Eif2b2 Links NCBI RGD Ensembl Show fit	eukaryotic translation initiation factor 2B subunit beta
chr10_+_89285855 Show fit	0.00	ENSRNOT00000028033	G6pc Links NCBI RGD Ensembl Show fit	glucose-6-phosphatase, catalytic subunit

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