GSE49485: Hypoxia transcriptome sequencing of rat brain.

• Motif significance table
• Sample table
• Mean activities
• All promoters sorted by FOV

• Activity table
• Activity delta table
• Regulatory interactions
• Motifs sorted by significance
• Expression table
• Download the whole report

Gene Symbol	Gene ID	Gene Info
Zkscan3 Links NCBI RGD Ensembl	ENSRNOG00000055000	zinc finger with KRAB and SCAN domains 3

Gene	Promoter	Pearson corr. coef.	P-value	Plot
Zkscan3	rn6_v1_chr17_+_45247776_45247794	-0.44	4.6e-01	Click!

Promoter	Log-likelihood	Transcript	Gene	Gene Info
chr12_+_47698947 Show fit	0.18	ENSRNOT00000001586	Trpv4 Links NCBI RGD Ensembl Show fit	transient receptor potential cation channel, subfamily V, member 4
chr8_+_116776494 Show fit	0.18	ENSRNOT00000050702	Cdhr4 Links NCBI RGD Ensembl Show fit	cadherin-related family member 4
chr19_-_43911057 Show fit	0.12	ENSRNOT00000026017	Ctrb1 Links NCBI RGD Ensembl Show fit	chymotrypsinogen B1
chr7_-_70452675 Show fit	0.11	ENSRNOT00000090498	AC114111.1 Links NCBI RGD Ensembl Show fit
chr14_+_10692764 Show fit	0.08	ENSRNOT00000003012	LOC100910270 Links NCBI RGD Ensembl Show fit	uncharacterized LOC100910270
chr1_+_80426918 Show fit	0.07	ENSRNOT00000067272	Nkpd1 Links NCBI RGD Ensembl Show fit	NTPase, KAP family P-loop domain containing 1
chr7_-_12432130 Show fit	0.07	ENSRNOT00000077301	Atp5d Links NCBI RGD Ensembl Show fit	ATP synthase, H+ transporting, mitochondrial F1 complex, delta subunit
chr16_+_19792838 Show fit	0.07	ENSRNOT00000022938	Babam1 Links NCBI RGD Ensembl Show fit	BRISC and BRCA1 A complex member 1
chr13_+_49074644 Show fit	0.06	ENSRNOT00000000041	Klhdc8a Links NCBI RGD Ensembl Show fit	kelch domain containing 8A
chr2_+_197682000 Show fit	0.06	ENSRNOT00000066821	Hormad1 Links NCBI RGD Ensembl Show fit	HORMA domain containing 1
chr5_+_157434481 Show fit	0.06	ENSRNOT00000088556	Tmco4 Links NCBI RGD Ensembl Show fit	transmembrane and coiled-coil domains 4
chr1_-_221917901 Show fit	0.06	ENSRNOT00000092270	Slc22a12 Links NCBI RGD Ensembl Show fit	solute carrier family 22 member 12
chr7_-_140770647 Show fit	0.05	ENSRNOT00000081784	C1ql4 Links NCBI RGD Ensembl Show fit	complement C1q like 4
chr3_+_11679530 Show fit	0.05	ENSRNOT00000074562 ENSRNOT00000071801	Eng Links NCBI RGD Ensembl Show fit	endoglin
chr20_+_13156241 Show fit	0.05	ENSRNOT00000050531	Prmt2 Links NCBI RGD Ensembl Show fit	protein arginine methyltransferase 2
chr5_+_157642751 Show fit	0.05	ENSRNOT00000083577 ENSRNOT00000010308	Capzb Links NCBI RGD Ensembl Show fit	capping actin protein of muscle Z-line beta subunit
chr8_+_116096458 Show fit	0.04	ENSRNOT00000021188	RGD1307461 Links NCBI RGD Ensembl Show fit	similar to RIKEN cDNA 6430571L13 gene; similar to g20 protein
chr1_+_78671121 Show fit	0.04	ENSRNOT00000021310	Ap2s1 Links NCBI RGD Ensembl Show fit	adaptor-related protein complex 2, sigma 1 subunit
chr10_-_13051154 Show fit	0.04	ENSRNOT00000033457	AABR07029202.1 Links NCBI RGD Ensembl Show fit
chr13_+_99214389 Show fit	0.04	ENSRNOT00000004354	Lefty1 Links NCBI RGD Ensembl Show fit	left right determination factor 1
chr12_-_18540166 Show fit	0.04	ENSRNOT00000001792	Il3ra Links NCBI RGD Ensembl Show fit	interleukin 3 receptor subunit alpha
chr10_-_62254287 Show fit	0.04	ENSRNOT00000004313	Serpinf1 Links NCBI RGD Ensembl Show fit	serpin family F member 1
chr3_-_10153554 Show fit	0.04	ENSRNOT00000093246	Exosc2 Links NCBI RGD Ensembl Show fit	exosome component 2
chr9_-_10338216 Show fit	0.03	ENSRNOT00000070862	Ndufa11 Links NCBI RGD Ensembl Show fit	NADH:ubiquinone oxidoreductase subunit A11
chr9_-_71852113 Show fit	0.03	ENSRNOT00000083263 ENSRNOT00000072983	AABR07067896.1 Links NCBI RGD Ensembl Show fit
chr8_+_71719563 Show fit	0.03	ENSRNOT00000022828	Ppib Links NCBI RGD Ensembl Show fit	peptidylprolyl isomerase B
chr15_-_58711872 Show fit	0.03	ENSRNOT00000058204	Serp2 Links NCBI RGD Ensembl Show fit	stress-associated endoplasmic reticulum protein family member 2
chr4_-_148845267 Show fit	0.03	ENSRNOT00000037397	Tmem72 Links NCBI RGD Ensembl Show fit	transmembrane protein 72
chr6_-_117972898 Show fit	0.03	ENSRNOT00000032968	AABR07065265.1 Links NCBI RGD Ensembl Show fit
chr10_+_105861743 Show fit	0.03	ENSRNOT00000064410	Mgat5b Links NCBI RGD Ensembl Show fit	mannosyl (alpha-1,6-)-glycoprotein beta-1,6-N-acetyl-glucosaminyltransferase, isozyme B
chr13_-_52136127 Show fit	0.03	ENSRNOT00000009398	Timm17a Links NCBI RGD Ensembl Show fit	translocase of inner mitochondrial membrane 17 homolog A (yeast)
chr7_+_11301957 Show fit	0.02	ENSRNOT00000027847	Tjp3 Links NCBI RGD Ensembl Show fit	tight junction protein 3
chr13_+_48427038 Show fit	0.02	ENSRNOT00000009241	Ctse Links NCBI RGD Ensembl Show fit	cathepsin E
chr10_+_106065712 Show fit	0.02	ENSRNOT00000003690	Sec14l1 Links NCBI RGD Ensembl Show fit	SEC14-like lipid binding 1
chr1_-_226924244 Show fit	0.02	ENSRNOT00000028971	Tmem132a Links NCBI RGD Ensembl Show fit	transmembrane protein 132A
chr1_-_242373764 Show fit	0.02	ENSRNOT00000076544	Fam122a Links NCBI RGD Ensembl Show fit	family with sequence similarity 122A
chr7_-_119200623 Show fit	0.02	ENSRNOT00000029753	Eif3d Links NCBI RGD Ensembl Show fit	eukaryotic translation initiation factor 3, subunit D
chr3_-_23297774 Show fit	0.02	ENSRNOT00000019162	Rpl35 Links NCBI RGD Ensembl Show fit	ribosomal protein L35
chr9_+_49479023 Show fit	0.02	ENSRNOT00000050922 ENSRNOT00000077111	Pou3f3 Links NCBI RGD Ensembl Show fit	POU class 3 homeobox 3
chr17_+_47662532 Show fit	0.02	ENSRNOT00000081314	Stard3nl Links NCBI RGD Ensembl Show fit	STARD3 N-terminal like
chr9_-_82461903 Show fit	0.02	ENSRNOT00000026654	Ptprn Links NCBI RGD Ensembl Show fit	protein tyrosine phosphatase, receptor type, N
chr10_+_14216155 Show fit	0.02	ENSRNOT00000020192	Hagh Links NCBI RGD Ensembl Show fit	hydroxyacyl glutathione hydrolase
chr10_-_14215957 Show fit	0.01	ENSRNOT00000019767	Fahd1 Links NCBI RGD Ensembl Show fit	fumarylacetoacetate hydrolase domain containing 1
chr8_-_59607275 Show fit	0.01	ENSRNOT00000019307	Chrna3 Links NCBI RGD Ensembl Show fit	cholinergic receptor nicotinic alpha 3 subunit
chr14_-_89179507 Show fit	0.01	ENSRNOT00000006498	Pkd1l1 Links NCBI RGD Ensembl Show fit	polycystin 1 like 1, transient receptor potential channel interacting
chr1_+_277190964 Show fit	0.01	ENSRNOT00000080511	Casp7 Links NCBI RGD Ensembl Show fit	caspase 7
chr5_+_24146171 Show fit	0.01	ENSRNOT00000037547	MGC94199 Links NCBI RGD Ensembl Show fit	similar to RIKEN cDNA 2610301B20; EST AI428449
chr10_-_34961349 Show fit	0.01	ENSRNOT00000004885	LOC103689931 Links NCBI RGD Ensembl Show fit	heterogeneous nuclear ribonucleoprotein A/B
chr19_-_57649827 Show fit	0.01	ENSRNOT00000026757	Exoc8 Links NCBI RGD Ensembl Show fit	exocyst complex component 8
chr10_-_37055282 Show fit	0.01	ENSRNOT00000086193 ENSRNOT00000065584	Hnrnpab Links NCBI RGD Ensembl Show fit	heterogeneous nuclear ribonucleoprotein A/B
chr4_-_161907767 Show fit	0.01	ENSRNOT00000009557	A2ml1 Links NCBI RGD Ensembl Show fit	alpha-2-macroglobulin-like 1
chr18_+_28409955 Show fit	0.01	ENSRNOT00000026989	Paip2 Links NCBI RGD Ensembl Show fit	poly(A) binding protein interacting protein 2
chr2_-_59181863 Show fit	0.01	ENSRNOT00000079636	Spef2 Links NCBI RGD Ensembl Show fit	sperm flagellar 2
chr12_-_47095438 Show fit	0.01	ENSRNOT00000001546	Coq5 Links NCBI RGD Ensembl Show fit	coenzyme Q5, methyltransferase
chr5_+_23358841 Show fit	0.01	ENSRNOT00000070963	MGC94199 Links NCBI RGD Ensembl Show fit	similar to RIKEN cDNA 2610301B20; EST AI428449
chr15_-_45550285 Show fit	0.01	ENSRNOT00000012948	Gucy1b2 Links NCBI RGD Ensembl Show fit	guanylate cyclase 1 soluble subunit beta 2
chr1_+_99532568 Show fit	0.00	ENSRNOT00000077073	Zfp819 Links NCBI RGD Ensembl Show fit	zinc finger protein 819
chrX_-_139229702 Show fit	0.00	ENSRNOT00000042507	AABR07041771.1 Links NCBI RGD Ensembl Show fit
chr1_-_174620064 Show fit	0.00	ENSRNOT00000016224	Tmem41b Links NCBI RGD Ensembl Show fit	transmembrane protein 41B
chr7_+_70452579 Show fit	0.00	ENSRNOT00000046099	B4galnt1 Links NCBI RGD Ensembl Show fit	beta-1,4-N-acetyl-galactosaminyl transferase 1
chr8_+_79722334 Show fit	0.00	ENSRNOT00000083957	Rab27a Links NCBI RGD Ensembl Show fit	RAB27A, member RAS oncogene family
chr11_-_69355854 Show fit	0.00	ENSRNOT00000002975	Ropn1 Links NCBI RGD Ensembl Show fit	rhophilin associated tail protein 1
chr19_+_49462129 Show fit	0.00	ENSRNOT00000015158	Cenpn Links NCBI RGD Ensembl Show fit	centromere protein N
chr7_+_64672722 Show fit	0.00	ENSRNOT00000064448 ENSRNOT00000005539	Grip1 Links NCBI RGD Ensembl Show fit	glutamate receptor interacting protein 1
chr2_-_59084059 Show fit	0.00	ENSRNOT00000086323 ENSRNOT00000088701	Spef2 Links NCBI RGD Ensembl Show fit	sperm flagellar 2

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Gene overrepresentation in biological process category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.1	0.2	GO:0071477	hypotonic salinity response(GO:0042539) cellular hypotonic salinity response(GO:0071477) chemokine (C-X-C motif) ligand 1 production(GO:0072566) regulation of chemokine (C-X-C motif) ligand 1 production(GO:2000338)
0.0	0.1	GO:1905072	cardiac jelly development(GO:1905072)
0.0	0.0	GO:0071031	nuclear mRNA surveillance of mRNA 3'-end processing(GO:0071031) nuclear polyadenylation-dependent tRNA catabolic process(GO:0071038) nuclear retention of pre-mRNA with aberrant 3'-ends at the site of transcription(GO:0071049)
0.0	0.0	GO:1901873	regulation of post-translational protein modification(GO:1901873)
0.0	0.0	GO:1900108	negative regulation of nodal signaling pathway(GO:1900108)

Gene overrepresentation in cellular component category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.0	GO:0030121	AP-1 adaptor complex(GO:0030121)

Gene overrepresentation in molecular function category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.2	GO:0008381	mechanically-gated ion channel activity(GO:0008381) mechanically gated channel activity(GO:0022833)
0.0	0.1	GO:0005534	galactose binding(GO:0005534)