GSE49485: Hypoxia transcriptome sequencing of rat brain.
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
Nfib | rn6_v1_chr5_-_100647298_100647298 | -0.42 | 4.8e-01 | Click! |
Nfic | rn6_v1_chr7_+_11152038_11152038 | 0.42 | 4.8e-01 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr1_-_80416273 Show fit | 1.21 |
ENSRNOT00000023457
|
biogenesis of lysosomal organelles complex-1, subunit 3 |
|
chr4_-_147163467 Show fit | 0.68 |
ENSRNOT00000010748
|
tissue inhibitor of metalloproteinase 4 |
|
chr15_-_34550850 Show fit | 0.66 |
ENSRNOT00000027794
ENSRNOT00000090228 |
cerebellin 3 precursor |
|
chr4_+_8256611 Show fit | 0.58 |
ENSRNOT00000061894
|
|
|
chr5_+_154522119 Show fit | 0.56 |
ENSRNOT00000072618
|
E2F transcription factor 2 |
|
chr20_+_5008508 Show fit | 0.55 |
ENSRNOT00000001153
|
von Willebrand factor A domain containing 7 |
|
chr14_+_83724933 Show fit | 0.47 |
ENSRNOT00000029848
|
phospholipase A2, group III |
|
chr20_-_9855443 Show fit | 0.47 |
ENSRNOT00000090275
ENSRNOT00000066266 |
trefoil factor 3 |
|
chrX_-_23187341 Show fit | 0.46 |
ENSRNOT00000000180
|
5'-aminolevulinate synthase 2 |
|
chr4_+_7377563 Show fit | 0.45 |
ENSRNOT00000084826
|
potassium voltage-gated channel subfamily H member 2 |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.3 | 1.2 | GO:0060155 | platelet dense granule organization(GO:0060155) |
0.1 | 0.6 | GO:1990086 | lens fiber cell apoptotic process(GO:1990086) |
0.1 | 0.6 | GO:0051045 | negative regulation of membrane protein ectodomain proteolysis(GO:0051045) |
0.2 | 0.5 | GO:1902303 | negative regulation of potassium ion export(GO:1902303) |
0.1 | 0.5 | GO:1901423 | response to benzene(GO:1901423) |
0.0 | 0.5 | GO:0019372 | lipoxygenase pathway(GO:0019372) |
0.1 | 0.4 | GO:0046087 | cytidine catabolic process(GO:0006216) cytidine deamination(GO:0009972) cytidine metabolic process(GO:0046087) |
0.1 | 0.4 | GO:0018879 | biphenyl metabolic process(GO:0018879) |
0.0 | 0.4 | GO:0032060 | bleb assembly(GO:0032060) |
0.1 | 0.3 | GO:0019375 | galactosylceramide biosynthetic process(GO:0006682) galactolipid biosynthetic process(GO:0019375) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 1.2 | GO:0031083 | BLOC-1 complex(GO:0031083) |
0.1 | 0.3 | GO:0030478 | actin cap(GO:0030478) |
0.0 | 0.3 | GO:0033269 | internode region of axon(GO:0033269) |
0.0 | 0.3 | GO:0031362 | anchored component of external side of plasma membrane(GO:0031362) |
0.0 | 0.3 | GO:0042629 | mast cell granule(GO:0042629) |
0.0 | 0.2 | GO:0045098 | type III intermediate filament(GO:0045098) |
0.0 | 0.2 | GO:0042581 | specific granule(GO:0042581) |
0.0 | 0.1 | GO:0071953 | elastic fiber(GO:0071953) |
0.0 | 0.1 | GO:0098574 | cytoplasmic side of lysosomal membrane(GO:0098574) |
0.0 | 0.1 | GO:0070821 | tertiary granule membrane(GO:0070821) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 1.5 | GO:0008320 | protein transmembrane transporter activity(GO:0008320) |
0.1 | 0.6 | GO:0008191 | metalloendopeptidase inhibitor activity(GO:0008191) |
0.2 | 0.5 | GO:0016748 | succinyltransferase activity(GO:0016748) |
0.1 | 0.5 | GO:0000155 | phosphorelay sensor kinase activity(GO:0000155) |
0.0 | 0.5 | GO:0004623 | phospholipase A2 activity(GO:0004623) |
0.1 | 0.4 | GO:0004126 | cytidine deaminase activity(GO:0004126) |
0.0 | 0.4 | GO:0015643 | toxic substance binding(GO:0015643) |
0.1 | 0.3 | GO:0001733 | galactosylceramide sulfotransferase activity(GO:0001733) |
0.0 | 0.3 | GO:0008172 | S-methyltransferase activity(GO:0008172) |
0.0 | 0.3 | GO:0019911 | structural constituent of myelin sheath(GO:0019911) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 0.6 | SA REG CASCADE OF CYCLIN EXPR | Expression of cyclins regulates progression through the cell cycle by activating cyclin-dependent kinases. |
0.0 | 0.2 | ST PAC1 RECEPTOR PATHWAY | PAC1 Receptor Pathway |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 1.2 | REACTOME GOLGI ASSOCIATED VESICLE BIOGENESIS | Genes involved in Golgi Associated Vesicle Biogenesis |
0.0 | 0.6 | REACTOME CDC6 ASSOCIATION WITH THE ORC ORIGIN COMPLEX | Genes involved in CDC6 association with the ORC:origin complex |
0.0 | 0.5 | REACTOME ACYL CHAIN REMODELLING OF PG | Genes involved in Acyl chain remodelling of PG |
0.0 | 0.5 | REACTOME METABOLISM OF PORPHYRINS | Genes involved in Metabolism of porphyrins |
0.0 | 0.4 | REACTOME CYTOCHROME P450 ARRANGED BY SUBSTRATE TYPE | Genes involved in Cytochrome P450 - arranged by substrate type |
0.0 | 0.4 | REACTOME CASPASE MEDIATED CLEAVAGE OF CYTOSKELETAL PROTEINS | Genes involved in Caspase-mediated cleavage of cytoskeletal proteins |
0.0 | 0.3 | REACTOME NA CL DEPENDENT NEUROTRANSMITTER TRANSPORTERS | Genes involved in Na+/Cl- dependent neurotransmitter transporters |
0.0 | 0.3 | REACTOME ADHERENS JUNCTIONS INTERACTIONS | Genes involved in Adherens junctions interactions |
0.0 | 0.2 | REACTOME GAP JUNCTION ASSEMBLY | Genes involved in Gap junction assembly |
0.0 | 0.1 | REACTOME FGFR2C LIGAND BINDING AND ACTIVATION | Genes involved in FGFR2c ligand binding and activation |