GSE49485: Hypoxia transcriptome sequencing of rat brain.

• Motif significance table
• Sample table
• Mean activities
• All promoters sorted by FOV

• Activity table
• Activity delta table
• Regulatory interactions
• Motifs sorted by significance
• Expression table
• Download the whole report

Gene Symbol	Gene ID	Gene Info
Gmeb1 Links NCBI RGD Ensembl	ENSRNOG00000010910	glucocorticoid modulatory element binding protein 1

Gene	Promoter	Pearson corr. coef.	P-value	Plot
Gmeb1	rn6_v1_chr5_-_150439959_150439959	0.16	8.0e-01	Click!

Promoter	Log-likelihood	Transcript	Gene	Gene Info
chr1_+_90948976 Show fit	0.25	ENSRNOT00000056877	LOC108348111 Links NCBI RGD Ensembl Show fit	succinate dehydrogenase assembly factor 1, mitochondrial
chr1_-_190370499 Show fit	0.15	ENSRNOT00000084389	AABR07005618.1 Links NCBI RGD Ensembl Show fit
chr5_-_151397603 Show fit	0.10	ENSRNOT00000076866	Gpr3 Links NCBI RGD Ensembl Show fit	G protein-coupled receptor 3
chr9_+_102862890 Show fit	0.09	ENSRNOT00000050494 ENSRNOT00000080129	Fam174a Links NCBI RGD Ensembl Show fit	family with sequence similarity 174, member A
chr1_-_80221710 Show fit	0.09	ENSRNOT00000091687	Fosb Links NCBI RGD Ensembl Show fit	FosB proto-oncogene, AP-1 transcription factor subunit
chr8_+_52829085 Show fit	0.08	ENSRNOT00000007754	RGD1563941 Links NCBI RGD Ensembl Show fit	similar to hypothetical protein FLJ20010
chr1_-_80221417 Show fit	0.07	ENSRNOT00000072149	Fosb Links NCBI RGD Ensembl Show fit	FosB proto-oncogene, AP-1 transcription factor subunit
chr15_-_4035064 Show fit	0.07	ENSRNOT00000012300	Fut11 Links NCBI RGD Ensembl Show fit	fucosyltransferase 11
chr16_-_74864816 Show fit	0.06	ENSRNOT00000017164	Alg11 Links NCBI RGD Ensembl Show fit	ALG11, alpha-1,2-mannosyltransferase
chr19_-_56731372 Show fit	0.06	ENSRNOT00000024182	Nup133 Links NCBI RGD Ensembl Show fit	nucleoporin 133
chr1_-_222468896 Show fit	0.06	ENSRNOT00000028754	Cox8a Links NCBI RGD Ensembl Show fit	cytochrome c oxidase subunit 8A
chr1_-_242441247 Show fit	0.05	ENSRNOT00000068645	Pip5k1b Links NCBI RGD Ensembl Show fit	phosphatidylinositol-4-phosphate 5-kinase type 1 beta
chr9_+_15166118 Show fit	0.04	ENSRNOT00000020432	Mdfi Links NCBI RGD Ensembl Show fit	MyoD family inhibitor
chr9_-_66019065 Show fit	0.04	ENSRNOT00000088729	Als2 Links NCBI RGD Ensembl Show fit	ALS2, alsin Rho guanine nucleotide exchange factor
chr1_-_80544825 Show fit	0.04	ENSRNOT00000057802 ENSRNOT00000040060 ENSRNOT00000067049 ENSRNOT00000052387 ENSRNOT00000073352	Relb Links NCBI RGD Ensembl Show fit	RELB proto-oncogene, NF-kB subunit
chr6_+_8346704 Show fit	0.04	ENSRNOT00000092218	AC111831.2 Links NCBI RGD Ensembl Show fit
chr7_-_117364697 Show fit	0.03	ENSRNOT00000077314	Oplah Links NCBI RGD Ensembl Show fit	5-oxoprolinase (ATP-hydrolysing)
chr10_+_63829807 Show fit	0.03	ENSRNOT00000006407	Crk Links NCBI RGD Ensembl Show fit	CRK proto-oncogene, adaptor protein
chrX_-_15347591 Show fit	0.03	ENSRNOT00000037066	Timm17b Links NCBI RGD Ensembl Show fit	translocase of inner mitochondrial membrane 17b
chr8_-_108880879 Show fit	0.03	ENSRNOT00000020610	Slc35g2 Links NCBI RGD Ensembl Show fit	solute carrier family 35, member G2
chr7_-_120780641 Show fit	0.03	ENSRNOT00000076164	Ddx17 Links NCBI RGD Ensembl Show fit	DEAD-box helicase 17
chr1_-_88780425 Show fit	0.03	ENSRNOT00000074494	Sdhaf1 Links NCBI RGD Ensembl Show fit	succinate dehydrogenase complex assembly factor 1
chr3_-_94657377 Show fit	0.03	ENSRNOT00000077484	Tcp11l1 Links NCBI RGD Ensembl Show fit	t-complex 11 like 1
chr17_+_11683862 Show fit	0.03	ENSRNOT00000024766	Msx2 Links NCBI RGD Ensembl Show fit	msh homeobox 2
chr10_+_83201311 Show fit	0.03	ENSRNOT00000006179	Slc35b1 Links NCBI RGD Ensembl Show fit	solute carrier family 35, member B1
chr13_-_73460912 Show fit	0.03	ENSRNOT00000005052 ENSRNOT00000068044	Qsox1 Links NCBI RGD Ensembl Show fit	quiescin sulfhydryl oxidase 1
chr7_-_120780108 Show fit	0.02	ENSRNOT00000018185	Ddx17 Links NCBI RGD Ensembl Show fit	DEAD-box helicase 17
chr10_+_17327275 Show fit	0.02	ENSRNOT00000005486	Ubtd2 Links NCBI RGD Ensembl Show fit	ubiquitin domain containing 2
chr5_+_173052063 Show fit	0.02	ENSRNOT00000023274	Cdk11b Links NCBI RGD Ensembl Show fit	cyclin-dependent kinase 11B
chr3_+_55960327 Show fit	0.02	ENSRNOT00000086584	Ppig Links NCBI RGD Ensembl Show fit	peptidylprolyl isomerase G
chr1_+_100845563 Show fit	0.02	ENSRNOT00000027478	Akt1s1 Links NCBI RGD Ensembl Show fit	AKT1 substrate 1
chr14_+_16341536 Show fit	0.02	ENSRNOT00000002924	Ccni Links NCBI RGD Ensembl Show fit	cyclin I
chrX_+_15348138 Show fit	0.02	ENSRNOT00000010536	Pqbp1 Links NCBI RGD Ensembl Show fit	polyglutamine binding protein 1
chr7_-_140245723 Show fit	0.02	ENSRNOT00000088999	Ccnt1 Links NCBI RGD Ensembl Show fit	cyclin T1
chr3_+_55960067 Show fit	0.01	ENSRNOT00000010216	Ppig Links NCBI RGD Ensembl Show fit	peptidylprolyl isomerase G
chr1_+_261158261 Show fit	0.01	ENSRNOT00000071965	Pgam1 Links NCBI RGD Ensembl Show fit	phosphoglycerate mutase 1
chr9_-_98597359 Show fit	0.01	ENSRNOT00000027506	Per2 Links NCBI RGD Ensembl Show fit	period circadian clock 2
chr1_+_261337594 Show fit	0.01	ENSRNOT00000019874	Pi4k2a Links NCBI RGD Ensembl Show fit	phosphatidylinositol 4-kinase type 2 alpha
chr14_+_107767392 Show fit	0.01	ENSRNOT00000012847	Cct4 Links NCBI RGD Ensembl Show fit	chaperonin containing TCP1 subunit 4
chr17_+_36451058 Show fit	0.01	ENSRNOT00000071408	Cdkal1 Links NCBI RGD Ensembl Show fit	CDK5 regulatory subunit associated protein 1-like 1
chr1_-_259089632 Show fit	0.01	ENSRNOT00000020940 ENSRNOT00000091297	Aldh18a1 Links NCBI RGD Ensembl Show fit	aldehyde dehydrogenase 18 family, member A1
chr18_+_31444472 Show fit	0.01	ENSRNOT00000075159	Rnf14 Links NCBI RGD Ensembl Show fit	ring finger protein 14
chr16_-_7290561 Show fit	0.01	ENSRNOT00000036910	Nisch Links NCBI RGD Ensembl Show fit	nischarin
chr2_+_28370373 Show fit	0.01	ENSRNOT00000073183	LOC100910438 Links NCBI RGD Ensembl Show fit	ankyrin repeat family A protein 2-like
chr3_-_154490851 Show fit	0.01	ENSRNOT00000017213	Tti1 Links NCBI RGD Ensembl Show fit	TELO2 interacting protein 1
chr1_-_259674425 Show fit	0.01	ENSRNOT00000091116	LOC108348083 Links NCBI RGD Ensembl Show fit	delta-1-pyrroline-5-carboxylate synthase
chr6_-_8346197 Show fit	0.01	ENSRNOT00000061826	Prepl Links NCBI RGD Ensembl Show fit	prolyl endopeptidase-like
chr1_+_212281237 Show fit	0.01	ENSRNOT00000075049	Utf1 Links NCBI RGD Ensembl Show fit	undifferentiated embryonic cell transcription factor 1
chr11_+_33845463 Show fit	0.01	ENSRNOT00000041838	Cbr1 Links NCBI RGD Ensembl Show fit	carbonyl reductase 1
chr20_-_5155293 Show fit	0.01	ENSRNOT00000092322	Prrc2a Links NCBI RGD Ensembl Show fit	proline-rich coiled-coil 2A
chr12_+_21981755 Show fit	0.01	ENSRNOT00000001871	LOC100910540 Links NCBI RGD Ensembl Show fit	7SK snRNA methylphosphate capping enzyme-like
chr7_+_11201690 Show fit	0.01	ENSRNOT00000005624	Fzr1 Links NCBI RGD Ensembl Show fit	fizzy/cell division cycle 20 related 1
chr10_-_50402616 Show fit	0.01	ENSRNOT00000004546	Hs3st3b1 Links NCBI RGD Ensembl Show fit	heparan sulfate-glucosamine 3-sulfotransferase 3B1
chr10_-_38642397 Show fit	0.01	ENSRNOT00000023628	Hspa4 Links NCBI RGD Ensembl Show fit	heat shock protein family A member 4
chr15_-_37325178 Show fit	0.01	ENSRNOT00000011699	Gja3 Links NCBI RGD Ensembl Show fit	gap junction protein, alpha 3
chr9_+_1313209 Show fit	0.01	ENSRNOT00000083387	Tbc1d5 Links NCBI RGD Ensembl Show fit	TBC1 domain family, member 5
chr7_-_122635731 Show fit	0.01	ENSRNOT00000025925	St13 Links NCBI RGD Ensembl Show fit	suppression of tumorigenicity 13
chr14_+_84211600 Show fit	0.00	ENSRNOT00000005996	Pes1 Links NCBI RGD Ensembl Show fit	pescadillo ribosomal biogenesis factor 1
chr10_-_107281235 Show fit	0.00	ENSRNOT00000004196	Cyth1 Links NCBI RGD Ensembl Show fit	cytohesin 1
chr1_-_222167447 Show fit	0.00	ENSRNOT00000028687	Prdx5 Links NCBI RGD Ensembl Show fit	peroxiredoxin 5
chr7_+_63922879 Show fit	0.00	ENSRNOT00000043581	RGD1565498 Links NCBI RGD Ensembl Show fit	similar to Hypothetical protein LOC270802
chr9_+_88110731 Show fit	0.00	ENSRNOT00000088677	Rhbdd1 Links NCBI RGD Ensembl Show fit	rhomboid domain containing 1
chr2_-_231881939 Show fit	0.00	ENSRNOT00000074644	Larp7 Links NCBI RGD Ensembl Show fit	La ribonucleoprotein domain family, member 7
chr10_-_36716601 Show fit	0.00	ENSRNOT00000038838	LOC497899 Links NCBI RGD Ensembl Show fit	similar to hypothetical protein 4930503F14
chr10_+_38918748 Show fit	0.00	ENSRNOT00000009999	Kif3a Links NCBI RGD Ensembl Show fit	kinesin family member 3a

View svg image
View png image

Gene overrepresentation in biological process category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.1	0.3	GO:0034552	respiratory chain complex II assembly(GO:0034552) mitochondrial respiratory chain complex II assembly(GO:0034553) mitochondrial respiratory chain complex II biogenesis(GO:0097032)

Gene overrepresentation in molecular function category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.1	GO:0000026	alpha-1,2-mannosyltransferase activity(GO:0000026)
0.0	0.1	GO:0046920	alpha-(1->3)-fucosyltransferase activity(GO:0046920)
0.0	0.0	GO:0017168	5-oxoprolinase (ATP-hydrolyzing) activity(GO:0017168)