ISMARA results: Gmeb1

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GSE49485: Hypoxia transcriptome sequencing of rat brain.

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Results for Gmeb1

Z-value: 0.34

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Transcription factors associated with Gmeb1

Gene Symbol	Gene ID	Gene Info
Gmeb1 NCBI RGD Ensembl	ENSRNOG00000010910	glucocorticoid modulatory element binding protein 1

Activity-expression correlation:

Gene	Promoter	Pearson corr. coef.	P-value	Plot
Gmeb1	rn6_v1_chr5_-_150439959_150439959	0.16	8.0e-01	Click!

Activity profile of Gmeb1 motif

Sorted Z-values of Gmeb1 motif

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Promoter	Log-likelihood	Transcript	Gene	Gene Info
chr1_+_90948976 Show fit	0.25	ENSRNOT00000056877	LOC108348111 NCBI RGD Ensembl Show fit	succinate dehydrogenase assembly factor 1, mitochondrial
chr1_-_190370499 Show fit	0.15	ENSRNOT00000084389	AABR07005618.1 NCBI RGD Ensembl Show fit
chr5_-_151397603 Show fit	0.10	ENSRNOT00000076866	Gpr3 NCBI RGD Ensembl Show fit	G protein-coupled receptor 3
chr9_+_102862890 Show fit	0.09	ENSRNOT00000050494 ENSRNOT00000080129	Fam174a NCBI RGD Ensembl Show fit	family with sequence similarity 174, member A
chr1_-_80221710 Show fit	0.09	ENSRNOT00000091687	Fosb NCBI RGD Ensembl Show fit	FosB proto-oncogene, AP-1 transcription factor subunit
chr8_+_52829085 Show fit	0.08	ENSRNOT00000007754	RGD1563941 NCBI RGD Ensembl Show fit	similar to hypothetical protein FLJ20010
chr1_-_80221417 Show fit	0.07	ENSRNOT00000072149	Fosb NCBI RGD Ensembl Show fit	FosB proto-oncogene, AP-1 transcription factor subunit
chr15_-_4035064 Show fit	0.07	ENSRNOT00000012300	Fut11 NCBI RGD Ensembl Show fit	fucosyltransferase 11
chr16_-_74864816 Show fit	0.06	ENSRNOT00000017164	Alg11 NCBI RGD Ensembl Show fit	ALG11, alpha-1,2-mannosyltransferase
chr19_-_56731372 Show fit	0.06	ENSRNOT00000024182	Nup133 NCBI RGD Ensembl Show fit	nucleoporin 133

Showing 1 to 10 of 65 entries

Network of associatons between targets according to the STRING database.

First level regulatory network of Gmeb1

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

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Log-likelihood per target	Total log-likelihood	Term	Description
0.1	0.3	GO:0034552	respiratory chain complex II assembly(GO:0034552) mitochondrial respiratory chain complex II assembly(GO:0034553) mitochondrial respiratory chain complex II biogenesis(GO:0097032)

Showing 1 to 1 of 1 entries

Gene overrepresentation in molecular function category:

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Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.1	GO:0000026	alpha-1,2-mannosyltransferase activity(GO:0000026)
0.0	0.1	GO:0046920	alpha-(1->3)-fucosyltransferase activity(GO:0046920)
0.0	0.0	GO:0017168	5-oxoprolinase (ATP-hydrolyzing) activity(GO:0017168)

Showing 1 to 3 of 3 entries