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GSE49485: Hypoxia transcriptome sequencing of rat brain.

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Results for Hmga1

Z-value: 0.47

Motif logo

Transcription factors associated with Hmga1

Gene Symbol Gene ID Gene Info
ENSRNOG00000000488 high mobility group AT-hook 1

Activity-expression correlation:

GenePromoterPearson corr. coef.P-valuePlot
Hmga1rn6_v1_chr20_+_7136007_71360070.089.0e-01Click!

Activity profile of Hmga1 motif

Sorted Z-values of Hmga1 motif

Promoter Log-likelihood Transcript Gene Gene Info
chr16_-_73827488 0.22 ENSRNOT00000064070
ankyrin 1
chr11_-_31180616 0.17 ENSRNOT00000065535
ENSRNOT00000052033
ENSRNOT00000002812
synaptojanin 1
chr6_+_73553210 0.15 ENSRNOT00000006562
A-kinase anchoring protein 6
chr9_-_88816898 0.15 ENSRNOT00000083667
solute carrier family 19 member 3
chr2_-_208225888 0.14 ENSRNOT00000054860

chr7_+_74350479 0.14 ENSRNOT00000089034

chr13_-_61591139 0.14 ENSRNOT00000005324
regulator of G-protein signaling 18
chr13_+_98311827 0.14 ENSRNOT00000082844
CDC42 binding protein kinase alpha
chr9_+_121831716 0.13 ENSRNOT00000056250
ENSRNOT00000056251
YES proto-oncogene 1, Src family tyrosine kinase
chr2_-_149444548 0.12 ENSRNOT00000018600
purinergic receptor P2Y12
chrX_-_158288109 0.11 ENSRNOT00000072527
PHD finger protein 6
chr4_-_16654811 0.11 ENSRNOT00000008637
piccolo (presynaptic cytomatrix protein)
chr16_-_70705128 0.11 ENSRNOT00000071258
ring finger protein 170
chr18_+_30562178 0.11 ENSRNOT00000040998
protocadherin beta-16-like
chr12_-_5773036 0.11 ENSRNOT00000041365
FRY microtubule binding protein
chr18_+_30864216 0.10 ENSRNOT00000027015
protocadherin gamma subfamily A, 7
chr9_-_28732919 0.10 ENSRNOT00000083915
regulating synaptic membrane exocytosis 1
chr14_-_28967980 0.10 ENSRNOT00000048175
adhesion G protein-coupled receptor L3
chr19_-_22194740 0.10 ENSRNOT00000086187
phosphorylase kinase regulatory subunit beta
chr4_-_89281222 0.10 ENSRNOT00000010898
family with sequence similarity 13, member A
chr11_-_11213821 0.10 ENSRNOT00000093706
roundabout guidance receptor 2
chr4_+_120672152 0.09 ENSRNOT00000077231
monoglyceride lipase
chrX_-_76708878 0.09 ENSRNOT00000045534
ATRX, chromatin remodeler
chr2_+_186980992 0.09 ENSRNOT00000020717
Rho guanine nucleotide exchange factor 11
chr9_-_73799427 0.09 ENSRNOT00000067589
KAT8 regulatory NSL complex subunit 1-like
chr6_+_27887797 0.09 ENSRNOT00000015827
additional sex combs like 2, transcriptional regulator
chrX_-_10031167 0.09 ENSRNOT00000060988
G protein-coupled receptor 34
chr4_-_135069970 0.09 ENSRNOT00000008221
contactin 3
chr2_+_231941794 0.09 ENSRNOT00000091475

chr13_-_90710148 0.08 ENSRNOT00000010113
ENSRNOT00000080638
potassium voltage-gated channel subfamily J member 9
chr3_-_66885085 0.08 ENSRNOT00000084299
ENSRNOT00000090547
phosphodiesterase 1A
chr8_-_8524643 0.08 ENSRNOT00000009418
contactin 5
chr3_+_150135821 0.08 ENSRNOT00000047286
zinc finger protein 341
chr2_+_186980793 0.08 ENSRNOT00000091336
Rho guanine nucleotide exchange factor 11
chr4_+_157705790 0.08 ENSRNOT00000025970
mitochondrial ribosomal protein L51
chr1_-_67134827 0.08 ENSRNOT00000045214
vomeronasal 1 receptor 45
chr5_+_116420690 0.07 ENSRNOT00000087089
nuclear factor I/A
chrX_+_54062935 0.07 ENSRNOT00000004854
TGF-beta activated kinase 1/MAP3K7 binding protein 3
chr13_+_98231326 0.07 ENSRNOT00000003837
CDC42 binding protein kinase alpha
chr17_-_57394985 0.07 ENSRNOT00000019968
enhancer of polycomb homolog 1
chrX_+_908044 0.07 ENSRNOT00000072087
zinc finger protein 300
chr15_-_40542495 0.07 ENSRNOT00000063943
nucleoporin 58
chr7_+_80750725 0.07 ENSRNOT00000079962
oxidation resistance 1
chr1_-_128287151 0.07 ENSRNOT00000084946
ENSRNOT00000089723
myocyte enhancer factor 2a
chr16_+_50152008 0.07 ENSRNOT00000019237
kallikrein B1
chr20_+_26755911 0.07 ENSRNOT00000083017
HECT and RLD domain containing E3 ubiquitin protein ligase 4
chr5_+_2278357 0.06 ENSRNOT00000066590
staufen double-stranded RNA binding protein 2
chr13_+_44615553 0.06 ENSRNOT00000082439
ENSRNOT00000005289
RAB3 GTPase activating protein catalytic subunit 1
chr12_-_37682964 0.06 ENSRNOT00000001421
similar to hypothetical protein FLJ38663
chr11_-_90406797 0.06 ENSRNOT00000073049
snail family transcriptional repressor 2
chr11_+_62584959 0.06 ENSRNOT00000071065
GRAM domain containing 1C
chr14_-_3288017 0.06 ENSRNOT00000080452
hypothetical protein LOC689986
chr14_-_81399353 0.06 ENSRNOT00000018340
adducin 1
chr5_-_8864578 0.06 ENSRNOT00000008480
centrosome and spindle pole associated protein 1
chr2_+_196013799 0.06 ENSRNOT00000084023
pogo transposable element with ZNF domain
chr17_-_53713408 0.06 ENSRNOT00000022445
AT-rich interactive domain-containing protein 4B-like
chr15_-_19541815 0.06 ENSRNOT00000008372
thioredoxin domain containing 16
chr2_-_231648122 0.05 ENSRNOT00000014962
ankyrin 2
chr9_-_52830457 0.05 ENSRNOT00000073557
solute carrier family 40 member 1
chr8_-_90962470 0.05 ENSRNOT00000086426
LCA5, lebercilin
chr9_-_81772851 0.05 ENSRNOT00000032719
ubiquitin specific peptidase 37
chr16_-_6404957 0.05 ENSRNOT00000048459
calcium voltage-gated channel subunit alpha1 D
chr18_-_1828606 0.05 ENSRNOT00000033312
establishment of sister chromatid cohesion N-acetyltransferase 1
chr16_-_6404578 0.05 ENSRNOT00000051371
calcium voltage-gated channel subunit alpha1 D
chrX_-_29648359 0.05 ENSRNOT00000086721
ENSRNOT00000006777
glycoprotein m6b
chr16_-_3139177 0.05 ENSRNOT00000039311
coiled-coil domain containing 66
chr4_+_99823252 0.05 ENSRNOT00000013587
RNA polymerase I subunit A
chr3_+_103753238 0.05 ENSRNOT00000007144
solute carrier family 12, member 6
chr4_+_118655728 0.05 ENSRNOT00000043082
AP2 associated kinase 1
chr1_+_57692836 0.05 ENSRNOT00000083968
ENSRNOT00000019358
chromodomain helicase DNA binding protein 1
chr8_+_117308469 0.05 ENSRNOT00000080778
glutamine-rich 1
chr7_+_132378273 0.05 ENSRNOT00000010990
hypothetical protein LOC690142
chr4_+_138269142 0.05 ENSRNOT00000007788
contactin 4
chr14_+_7171613 0.05 ENSRNOT00000081600
kelch-like family member 8
chr3_-_133122691 0.04 ENSRNOT00000083637
taspase 1
chr6_+_134844676 0.04 ENSRNOT00000007595
protein phosphatase 2, regulatory subunit B', gamma
chr4_-_99822879 0.04 ENSRNOT00000012622
ENSRNOT00000078991
Pentatricopeptide repeat domain 3
chr6_-_61405195 0.04 ENSRNOT00000008655
leucine rich repeat neuronal 3
chr8_-_90984224 0.04 ENSRNOT00000044931
LCA5, lebercilin
chr5_-_83648044 0.04 ENSRNOT00000046725
similar to ribosomal protein L31
chr8_-_96266342 0.04 ENSRNOT00000078891
synaptotagmin binding, cytoplasmic RNA interacting protein
chr1_+_257724842 0.04 ENSRNOT00000075515

chr9_-_65442257 0.04 ENSRNOT00000037660
family with sequence similarity 126, member B
chr16_-_10603850 0.04 ENSRNOT00000087737
family with sequence similarity 35, member A
chr4_-_50200328 0.03 ENSRNOT00000060530
aminoadipate-semialdehyde synthase
chr14_+_48768537 0.03 ENSRNOT00000082599
ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2
chr20_+_18833481 0.03 ENSRNOT00000080846
BicC family RNA binding protein 1
chr6_+_106496992 0.03 ENSRNOT00000086136
ENSRNOT00000058181
regulator of G-protein signaling 6
chr11_+_20474483 0.03 ENSRNOT00000082417
ENSRNOT00000002895
neural cell adhesion molecule 2
chr2_-_18531210 0.03 ENSRNOT00000088313
versican
chr19_-_49510901 0.03 ENSRNOT00000082929
ENSRNOT00000079969
hypothetical protein LOC687399
chr14_+_21177237 0.03 ENSRNOT00000004866
immunoglobulin joining chain
chr19_-_11669578 0.03 ENSRNOT00000026373
G protein subunit alpha o1
chrX_+_84064427 0.03 ENSRNOT00000046364
zinc finger protein 711
chr7_-_142063212 0.03 ENSRNOT00000089912
solute carrier family 11 member 2
chr14_+_108143869 0.03 ENSRNOT00000090003
ubiquitin specific peptidase 34
chr16_-_7336335 0.03 ENSRNOT00000044991
PHD finger protein 7
chr14_-_5006594 0.03 ENSRNOT00000076571
zinc finger protein 326
chr9_+_2202511 0.03 ENSRNOT00000017556
SATB homeobox 1
chr3_+_98297554 0.03 ENSRNOT00000006524
potassium voltage-gated channel subfamily A member 4
chr2_-_22096949 0.03 ENSRNOT00000089325
zinc finger FYVE-type containing 16
chr17_-_15429051 0.03 ENSRNOT00000074667
nucleolar protein 8
chr14_+_48726045 0.03 ENSRNOT00000086646
ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2
chr14_-_102293677 0.03 ENSRNOT00000008135
Ewing tumor-associated antigen 1
chr2_+_185591959 0.03 ENSRNOT00000057084
LPS responsive beige-like anchor protein
chrX_+_71342775 0.02 ENSRNOT00000004888
integrin subunit beta 1 binding protein 2
chr3_-_150960030 0.02 ENSRNOT00000024714
nuclear receptor coactivator 6
chr12_-_37411525 0.02 ENSRNOT00000087698
tectonic family member 2
chr9_-_66019065 0.02 ENSRNOT00000088729
ALS2, alsin Rho guanine nucleotide exchange factor
chr3_+_154910626 0.02 ENSRNOT00000079515
Ral GTPase activating protein non-catalytic beta subunit
chr16_-_19583386 0.02 ENSRNOT00000090131
zinc finger protein 617
chr1_-_155955173 0.02 ENSRNOT00000079345

chr16_-_6405117 0.02 ENSRNOT00000047737
calcium voltage-gated channel subunit alpha1 D
chr18_+_30574627 0.02 ENSRNOT00000060484
protocadherin beta 19
chr11_-_4332255 0.02 ENSRNOT00000087133
cell adhesion molecule 2
chrX_+_20423401 0.02 ENSRNOT00000093162
WNK lysine deficient protein kinase 3
chr2_+_237755673 0.02 ENSRNOT00000083937
TBC1 domain containing kinase
chr7_+_140758615 0.02 ENSRNOT00000089448
trophinin associated protein
chr7_+_37101391 0.02 ENSRNOT00000029764
early endosome antigen 1
chr1_-_90149991 0.02 ENSRNOT00000076987
similar to RIKEN cDNA 4931406P16
chr14_+_34455934 0.02 ENSRNOT00000085991
ENSRNOT00000002981
clock circadian regulator
chr17_+_44766313 0.02 ENSRNOT00000091688
histone cluster 1 H1 family member b
chr4_+_102426224 0.02 ENSRNOT00000073768
NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 3 pseudogene
chr3_+_172385672 0.02 ENSRNOT00000090989
GNAS complex locus
chr13_-_55173692 0.02 ENSRNOT00000064785
ENSRNOT00000029878
ENSRNOT00000029865
ENSRNOT00000060292
ENSRNOT00000000814
protein tyrosine phosphatase, receptor type, C
chr13_+_57243877 0.02 ENSRNOT00000083693
potassium sodium-activated channel subfamily T member 2
chr8_-_53899669 0.02 ENSRNOT00000082257
neural cell adhesion molecule 1
chr16_-_2227258 0.02 ENSRNOT00000089377
ENSRNOT00000067464
sarcolemma associated protein
chr2_+_235264219 0.02 ENSRNOT00000086245
complement factor I
chr10_+_97771264 0.01 ENSRNOT00000005257
arylsulfatase G
chr1_-_255976425 0.01 ENSRNOT00000085303
insulin degrading enzyme
chr2_-_184263564 0.01 ENSRNOT00000015279
F-box and WD repeat domain containing 7
chr6_+_95323579 0.01 ENSRNOT00000007369
pecanex homolog 4 (Drosophila)
chr8_-_126390801 0.01 ENSRNOT00000089732

chr2_-_258932200 0.01 ENSRNOT00000045905
adhesion G protein-coupled receptor L2
chr15_-_42517553 0.01 ENSRNOT00000081500
ENSRNOT00000021320
establishment of sister chromatid cohesion N-acetyltransferase 2
chr5_+_36566783 0.01 ENSRNOT00000077650
F-box and leucine-rich repeat protein 4
chr11_-_61698595 0.01 ENSRNOT00000093445
coiled-coil domain containing 191
chrX_-_142248369 0.01 ENSRNOT00000091330
fibroblast growth factor 13
chr5_-_50138475 0.01 ENSRNOT00000011969
solute carrier family 35 member A1
chr3_-_147188929 0.01 ENSRNOT00000055455
RAD21 cohesin complex component like 1
chr11_+_7265828 0.01 ENSRNOT00000084765
1,4-alpha-glucan branching enzyme 1
chr6_-_137733026 0.01 ENSRNOT00000019213
jagged 2
chr8_+_107508351 0.01 ENSRNOT00000081594
centrosomal protein 70
chr9_-_44419998 0.01 ENSRNOT00000091397
ENSRNOT00000083747
testis specific 10
chr3_-_48535909 0.01 ENSRNOT00000008148
fibroblast activation protein, alpha
chr5_+_3675833 0.00 ENSRNOT00000011083
similar to mKIAA1321 protein
chr1_+_13261876 0.00 ENSRNOT00000090703
RALBP1 associated Eps domain containing 1
chr1_-_183729569 0.00 ENSRNOT00000083293
coatomer protein complex, subunit beta 1
chr14_+_70780623 0.00 ENSRNOT00000083871
ENSRNOT00000058803
LIM domain binding 2
chr9_-_115382445 0.00 ENSRNOT00000091316
protein tyrosine phosphatase, receptor type, M
chrX_+_78042859 0.00 ENSRNOT00000003286
lysophosphatidic acid receptor 4
chr14_-_33543238 0.00 ENSRNOT00000066382
signal recognition particle 72
chrX_-_95062132 0.00 ENSRNOT00000049956
nucleosome assembly protein 1-like 3
chr6_+_122751016 0.00 ENSRNOT00000078050
zinc finger CCCH type containing 14
chr3_-_104018861 0.00 ENSRNOT00000008387
cholinergic receptor, muscarinic 5

Network of associatons between targets according to the STRING database.

First level regulatory network of Hmga1

PNG image of the network

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.2 GO:0071934 thiamine transmembrane transport(GO:0071934)
0.0 0.1 GO:1904139 microglial cell migration(GO:1904124) regulation of microglial cell migration(GO:1904139)
0.0 0.2 GO:1902261 positive regulation of delayed rectifier potassium channel activity(GO:1902261)
0.0 0.1 GO:0031632 positive regulation of synaptic vesicle fusion to presynaptic membrane(GO:0031632)
0.0 0.1 GO:1901580 post-embryonic appendage morphogenesis(GO:0035120) post-embryonic limb morphogenesis(GO:0035127) post-embryonic forelimb morphogenesis(GO:0035128) telomeric repeat-containing RNA transcription(GO:0097393) telomeric repeat-containing RNA transcription from RNA pol II promoter(GO:0097394) regulation of telomeric RNA transcription from RNA pol II promoter(GO:1901580) negative regulation of telomeric RNA transcription from RNA pol II promoter(GO:1901581) positive regulation of telomeric RNA transcription from RNA pol II promoter(GO:1901582)
0.0 0.2 GO:0099590 neurotransmitter receptor internalization(GO:0099590)
0.0 0.1 GO:1904428 negative regulation of tubulin deacetylation(GO:1904428)
0.0 0.1 GO:2000124 regulation of endocannabinoid signaling pathway(GO:2000124)
0.0 0.1 GO:0055005 ventricular cardiac myofibril assembly(GO:0055005)
0.0 0.1 GO:1903233 regulation of calcium ion-dependent exocytosis of neurotransmitter(GO:1903233) positive regulation of endoplasmic reticulum tubular network organization(GO:1903373)
0.0 0.1 GO:0070563 negative regulation of vitamin D receptor signaling pathway(GO:0070563)
0.0 0.1 GO:0050925 negative regulation of negative chemotaxis(GO:0050925)
0.0 0.1 GO:0099526 synaptic vesicle targeting(GO:0016080) presynaptic signal transduction(GO:0098928) presynapse to nucleus signaling pathway(GO:0099526)
0.0 0.1 GO:0034395 regulation of transcription from RNA polymerase II promoter in response to iron(GO:0034395)
0.0 0.1 GO:1900157 regulation of bone mineralization involved in bone maturation(GO:1900157)
0.0 0.1 GO:0060060 post-embryonic retina morphogenesis in camera-type eye(GO:0060060)
0.0 0.0 GO:0071477 hypotonic salinity response(GO:0042539) cellular hypotonic salinity response(GO:0071477)
0.0 0.1 GO:0098964 dendritic transport of ribonucleoprotein complex(GO:0098961) dendritic transport of messenger ribonucleoprotein complex(GO:0098963) anterograde dendritic transport of messenger ribonucleoprotein complex(GO:0098964)
0.0 0.1 GO:0034421 post-translational protein acetylation(GO:0034421)
0.0 0.2 GO:0007097 nuclear migration(GO:0007097)
0.0 0.1 GO:0086046 membrane depolarization during SA node cell action potential(GO:0086046)
0.0 0.1 GO:0033292 T-tubule organization(GO:0033292) protein localization to M-band(GO:0036309) protein localization to T-tubule(GO:0036371)
0.0 0.0 GO:0033512 L-lysine catabolic process to acetyl-CoA via saccharopine(GO:0033512)
0.0 0.1 GO:0051919 positive regulation of fibrinolysis(GO:0051919)
0.0 0.0 GO:0035444 nickel cation transport(GO:0015675) vanadium ion transport(GO:0015676) lead ion transport(GO:0015692) nickel cation transmembrane transport(GO:0035444)
0.0 0.1 GO:0051611 negative regulation of neurotransmitter uptake(GO:0051581) regulation of serotonin uptake(GO:0051611) negative regulation of serotonin uptake(GO:0051612)
0.0 0.1 GO:1903142 positive regulation of endothelial cell development(GO:1901552) positive regulation of establishment of endothelial barrier(GO:1903142)

Gene overrepresentation in cellular component category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.2 GO:0014701 junctional sarcoplasmic reticulum membrane(GO:0014701)
0.0 0.1 GO:0044317 rod spherule(GO:0044317)
0.0 0.1 GO:1990421 subtelomeric heterochromatin(GO:1990421) nuclear subtelomeric heterochromatin(GO:1990707)
0.0 0.2 GO:0014731 spectrin-associated cytoskeleton(GO:0014731)
0.0 0.1 GO:0032777 Piccolo NuA4 histone acetyltransferase complex(GO:0032777)
0.0 0.1 GO:0098831 presynaptic active zone cytoplasmic component(GO:0098831)
0.0 0.1 GO:0005964 phosphorylase kinase complex(GO:0005964)
0.0 0.0 GO:0042571 immunoglobulin complex, circulating(GO:0042571)
0.0 0.0 GO:0070826 paraferritin complex(GO:0070826)
0.0 0.0 GO:0044609 DBIRD complex(GO:0044609)
0.0 0.1 GO:1990454 L-type voltage-gated calcium channel complex(GO:1990454)

Gene overrepresentation in molecular function category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.2 GO:0043812 phosphatidylinositol-4-phosphate phosphatase activity(GO:0043812)
0.1 0.2 GO:0015563 thiamine transmembrane transporter activity(GO:0015234) uptake transmembrane transporter activity(GO:0015563)
0.0 0.2 GO:0008093 cytoskeletal adaptor activity(GO:0008093)
0.0 0.1 GO:0086059 voltage-gated calcium channel activity involved SA node cell action potential(GO:0086059)
0.0 0.1 GO:0048101 calcium- and calmodulin-regulated 3',5'-cyclic-GMP phosphodiesterase activity(GO:0048101)
0.0 0.1 GO:0015616 DNA translocase activity(GO:0015616)
0.0 0.2 GO:0043495 protein anchor(GO:0043495)
0.0 0.1 GO:0015467 G-protein activated inward rectifier potassium channel activity(GO:0015467)
0.0 0.1 GO:0001609 G-protein coupled adenosine receptor activity(GO:0001609)
0.0 0.1 GO:0004689 phosphorylase kinase activity(GO:0004689)
0.0 0.0 GO:0015639 cadmium ion transmembrane transporter activity(GO:0015086) lead ion transmembrane transporter activity(GO:0015094) nickel cation transmembrane transporter activity(GO:0015099) vanadium ion transmembrane transporter activity(GO:0015100) ferrous iron uptake transmembrane transporter activity(GO:0015639) chromium ion transmembrane transporter activity(GO:0070835)