GSE49485: Hypoxia transcriptome sequencing of rat brain.

• Motif significance table
• Sample table
• Mean activities
• All promoters sorted by FOV

• Activity table
• Activity delta table
• Regulatory interactions
• Motifs sorted by significance
• Expression table
• Download the whole report

Gene Symbol	Gene ID	Gene Info
Gata4 Links NCBI RGD Ensembl	ENSRNOG00000010708	GATA binding protein 4

Gene	Promoter	Pearson corr. coef.	P-value	Plot
Gata4	rn6_v1_chr15_-_46432965_46432965	0.48	4.1e-01	Click!

Promoter	Log-likelihood	Transcript	Gene	Gene Info
chr5_+_50381244 Show fit	0.13	ENSRNOT00000012385	Cga Links NCBI RGD Ensembl Show fit	glycoprotein hormones, alpha polypeptide
chr17_-_22143324 Show fit	0.10	ENSRNOT00000019361	Edn1 Links NCBI RGD Ensembl Show fit	endothelin 1
chr1_+_279798187 Show fit	0.10	ENSRNOT00000024065	Pnlip Links NCBI RGD Ensembl Show fit	pancreatic lipase
chr9_-_82146874 Show fit	0.10	ENSRNOT00000024190	Fev Links NCBI RGD Ensembl Show fit	FEV, ETS transcription factor
chr1_+_72882806 Show fit	0.10	ENSRNOT00000024640	Tnni3 Links NCBI RGD Ensembl Show fit	troponin I3, cardiac type
chr1_-_261446570 Show fit	0.10	ENSRNOT00000020182	Sfrp5 Links NCBI RGD Ensembl Show fit	secreted frizzled-related protein 5
chr1_-_164205222 Show fit	0.06	ENSRNOT00000035774	Mogat2 Links NCBI RGD Ensembl Show fit	monoacylglycerol O-acyltransferase 2
chr10_+_103874383 Show fit	0.05	ENSRNOT00000038935	Otop2 Links NCBI RGD Ensembl Show fit	otopetrin 2
chr8_+_50525091 Show fit	0.04	ENSRNOT00000074357	Apoa1 Links NCBI RGD Ensembl Show fit	apolipoprotein A1
chr15_+_67555835 Show fit	0.04	ENSRNOT00000045882	Pcdh17 Links NCBI RGD Ensembl Show fit	protocadherin 17
chr3_+_160852164 Show fit	0.04	ENSRNOT00000019127	Rbpjl Links NCBI RGD Ensembl Show fit	recombination signal binding protein for immunoglobulin kappa J region-like
chr8_-_33661049 Show fit	0.04	ENSRNOT00000068037	Fli1 Links NCBI RGD Ensembl Show fit	Fli-1 proto-oncogene, ETS transcription factor
chr18_-_16542165 Show fit	0.04	ENSRNOT00000079381	Slc39a6 Links NCBI RGD Ensembl Show fit	solute carrier family 39 member 6
chrX_+_112270986 Show fit	0.04	ENSRNOT00000091441 ENSRNOT00000082652	Vsig1 Links NCBI RGD Ensembl Show fit	V-set and immunoglobulin domain containing 1
chr5_+_138685624 Show fit	0.04	ENSRNOT00000011867	Guca2a Links NCBI RGD Ensembl Show fit	guanylate cyclase activator 2A
chr1_+_175445088 Show fit	0.04	ENSRNOT00000036718	Adm Links NCBI RGD Ensembl Show fit	adrenomedullin
chr13_-_53870428 Show fit	0.03	ENSRNOT00000000812	Nr5a2 Links NCBI RGD Ensembl Show fit	nuclear receptor subfamily 5, group A, member 2
chr19_-_14945302 Show fit	0.03	ENSRNOT00000079391	AABR07042936.2 Links NCBI RGD Ensembl Show fit
chr8_-_117820413 Show fit	0.02	ENSRNOT00000075819	Tma7 Links NCBI RGD Ensembl Show fit	translation machinery associated 7 homolog
chr4_-_181477281 Show fit	0.02	ENSRNOT00000055463	Mansc4 Links NCBI RGD Ensembl Show fit	MANSC domain containing 4
chrX_-_78496847 Show fit	0.02	ENSRNOT00000003265	Itm2a Links NCBI RGD Ensembl Show fit	integral membrane protein 2A
chr10_-_15610826 Show fit	0.02	ENSRNOT00000027851	Hbz Links NCBI RGD Ensembl Show fit	hemoglobin subunit zeta
chr6_+_50725085 Show fit	0.02	ENSRNOT00000009473	Slc26a3 Links NCBI RGD Ensembl Show fit	solute carrier family 26 member 3
chr20_-_2191640 Show fit	0.02	ENSRNOT00000001016	Trim10 Links NCBI RGD Ensembl Show fit	tripartite motif-containing 10
chr4_+_119225040 Show fit	0.02	ENSRNOT00000012365	Bmp10 Links NCBI RGD Ensembl Show fit	bone morphogenetic protein 10
chrX_-_13601069 Show fit	0.02	ENSRNOT00000004686	Otc Links NCBI RGD Ensembl Show fit	ornithine carbamoyltransferase
chr10_-_87232723 Show fit	0.02	ENSRNOT00000015150	Krt25 Links NCBI RGD Ensembl Show fit	keratin 25
chr15_-_61772516 Show fit	0.02	ENSRNOT00000015605 ENSRNOT00000093399	Wbp4 Links NCBI RGD Ensembl Show fit	WW domain binding protein 4
chr19_-_10450186 Show fit	0.02	ENSRNOT00000088048	Adgrg1 Links NCBI RGD Ensembl Show fit	adhesion G protein-coupled receptor G1
chr11_-_60679555 Show fit	0.02	ENSRNOT00000059735	Ccdc80 Links NCBI RGD Ensembl Show fit	coiled-coil domain containing 80
chr3_+_79918969 Show fit	0.02	ENSRNOT00000016306	Spi1 Links NCBI RGD Ensembl Show fit	Spi-1 proto-oncogene
chr11_-_33003021 Show fit	0.02	ENSRNOT00000084134	Runx1 Links NCBI RGD Ensembl Show fit	runt-related transcription factor 1
chr1_-_226732736 Show fit	0.02	ENSRNOT00000072343	LOC108348129 Links NCBI RGD Ensembl Show fit	pepsin F-like
chr4_+_163162211 Show fit	0.02	ENSRNOT00000082537	Clec1b Links NCBI RGD Ensembl Show fit	C-type lectin domain family 1, member B
chr6_+_22696397 Show fit	0.02	ENSRNOT00000011630	Alk Links NCBI RGD Ensembl Show fit	anaplastic lymphoma receptor tyrosine kinase
chr2_+_116970344 Show fit	0.02	ENSRNOT00000039603	Egfem1 Links NCBI RGD Ensembl Show fit	EGF-like and EMI domain containing 1
chr11_-_35749464 Show fit	0.02	ENSRNOT00000078818 ENSRNOT00000078425	Erg Links NCBI RGD Ensembl Show fit	ERG, ETS transcription factor
chr8_+_22047697 Show fit	0.02	ENSRNOT00000067741	Icam4 Links NCBI RGD Ensembl Show fit	intercellular adhesion molecule 4, Landsteiner-Wiener blood group
chr3_-_112985318 Show fit	0.02	ENSRNOT00000015556	Epb42 Links NCBI RGD Ensembl Show fit	erythrocyte membrane protein band 4.2
chr2_+_42726809 Show fit	0.02	ENSRNOT00000036860	AABR07008097.1 Links NCBI RGD Ensembl Show fit
chr9_+_95256627 Show fit	0.02	ENSRNOT00000025291	Ugt1a5 Links NCBI RGD Ensembl Show fit	UDP glucuronosyltransferase family 1 member A5
chr7_+_11490852 Show fit	0.02	ENSRNOT00000044484	Creb3l3 Links NCBI RGD Ensembl Show fit	cAMP responsive element binding protein 3-like 3
chr5_+_133864798 Show fit	0.01	ENSRNOT00000091977	Tal1 Links NCBI RGD Ensembl Show fit	TAL bHLH transcription factor 1, erythroid differentiation factor
chr6_+_137164535 Show fit	0.01	ENSRNOT00000018225	Inf2 Links NCBI RGD Ensembl Show fit	inverted formin, FH2 and WH2 domain containing
chr5_-_28130803 Show fit	0.01	ENSRNOT00000093186	Slc26a7 Links NCBI RGD Ensembl Show fit	solute carrier family 26 member 7
chr6_+_7961413 Show fit	0.01	ENSRNOT00000007638 ENSRNOT00000061871	Abcg8 Links NCBI RGD Ensembl Show fit	ATP binding cassette subfamily G member 8
chr5_+_154077944 Show fit	0.01	ENSRNOT00000031512	Il22ra1 Links NCBI RGD Ensembl Show fit	interleukin 22 receptor subunit alpha 1
chr11_-_64952687 Show fit	0.01	ENSRNOT00000087892	Popdc2 Links NCBI RGD Ensembl Show fit	popeye domain containing 2
chr5_+_14890408 Show fit	0.01	ENSRNOT00000033116	Sox17 Links NCBI RGD Ensembl Show fit	SRY box 17
chr2_-_60657712 Show fit	0.01	ENSRNOT00000040348	Rai14 Links NCBI RGD Ensembl Show fit	retinoic acid induced 14
chr3_+_159936856 Show fit	0.01	ENSRNOT00000078703	Hnf4a Links NCBI RGD Ensembl Show fit	hepatocyte nuclear factor 4, alpha
chrX_+_83678339 Show fit	0.01	ENSRNOT00000005997	Apool Links NCBI RGD Ensembl Show fit	apolipoprotein O-like
chr2_+_189423559 Show fit	0.01	ENSRNOT00000029076	Tpm3 Links NCBI RGD Ensembl Show fit	tropomyosin 3
chr13_+_48513008 Show fit	0.01	ENSRNOT00000009742	Slc26a9 Links NCBI RGD Ensembl Show fit	solute carrier family 26 member 9
chr16_+_49266903 Show fit	0.01	ENSRNOT00000014704	Slc25a4 Links NCBI RGD Ensembl Show fit	solute carrier family 25 member 4
chr15_+_33632416 Show fit	0.01	ENSRNOT00000068212	AC130940.1 Links NCBI RGD Ensembl Show fit
chr17_-_21677477 Show fit	0.01	ENSRNOT00000035448	Gcnt2 Links NCBI RGD Ensembl Show fit	glucosaminyl (N-acetyl) transferase 2, I-branching enzyme
chr19_-_25166528 Show fit	0.01	ENSRNOT00000007775	Rln3 Links NCBI RGD Ensembl Show fit	relaxin 3
chr1_+_17602281 Show fit	0.01	ENSRNOT00000075461	LOC103690149 Links NCBI RGD Ensembl Show fit	jouberin-like
chr10_-_90415070 Show fit	0.01	ENSRNOT00000055179	Itga2b Links NCBI RGD Ensembl Show fit	integrin subunit alpha 2b
chr3_+_55910177 Show fit	0.01	ENSRNOT00000009969	Klhl41 Links NCBI RGD Ensembl Show fit	kelch-like family member 41
chr6_-_26385761 Show fit	0.01	ENSRNOT00000073228	Gckr Links NCBI RGD Ensembl Show fit	glucokinase regulator
chr3_-_2453933 Show fit	0.01	ENSRNOT00000014060	Slc34a3 Links NCBI RGD Ensembl Show fit	solute carrier family 34 member 3
chr2_-_77784522 Show fit	0.01	ENSRNOT00000030328	LOC310177 Links NCBI RGD Ensembl Show fit	similar to RIKEN cDNA 0610040D20
chr17_-_84247038 Show fit	0.01	ENSRNOT00000068553	Nebl Links NCBI RGD Ensembl Show fit	nebulette
chr17_-_21705773 Show fit	0.01	ENSRNOT00000078010	Gcnt2 Links NCBI RGD Ensembl Show fit	glucosaminyl (N-acetyl) transferase 2, I-branching enzyme
chr2_-_259382765 Show fit	0.01	ENSRNOT00000091407	St6galnac3 Links NCBI RGD Ensembl Show fit	ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 3
chr8_-_48672732 Show fit	0.01	ENSRNOT00000079275	Hmbs Links NCBI RGD Ensembl Show fit	hydroxymethylbilane synthase
chr3_-_93216495 Show fit	0.01	ENSRNOT00000010580	Ehf Links NCBI RGD Ensembl Show fit	ets homologous factor
chr5_-_28131133 Show fit	0.01	ENSRNOT00000067331	Slc26a7 Links NCBI RGD Ensembl Show fit	solute carrier family 26 member 7
chr10_+_70262361 Show fit	0.01	ENSRNOT00000064625 ENSRNOT00000076973	Unc45b Links NCBI RGD Ensembl Show fit	unc-45 myosin chaperone B
chr2_-_192027225 Show fit	0.01	ENSRNOT00000016430	Prr9 Links NCBI RGD Ensembl Show fit	proline rich 9
chr6_-_23291568 Show fit	0.01	ENSRNOT00000085708	Clip4 Links NCBI RGD Ensembl Show fit	CAP-GLY domain containing linker protein family, member 4
chr6_-_132797675 Show fit	0.01	ENSRNOT00000006128	Wars Links NCBI RGD Ensembl Show fit	tryptophanyl-tRNA synthetase
chr19_-_38344845 Show fit	0.00	ENSRNOT00000072666	AABR07043748.1 Links NCBI RGD Ensembl Show fit
chrX_-_104932508 Show fit	0.00	ENSRNOT00000075325	Nox1 Links NCBI RGD Ensembl Show fit	NADPH oxidase 1
chr11_+_80736576 Show fit	0.00	ENSRNOT00000047678	Masp1 Links NCBI RGD Ensembl Show fit	mannan-binding lectin serine peptidase 1
chr16_+_50022998 Show fit	0.00	ENSRNOT00000087986	Tlr3 Links NCBI RGD Ensembl Show fit	toll-like receptor 3
chr7_+_60099120 Show fit	0.00	ENSRNOT00000007338	LOC100911101 Links NCBI RGD Ensembl Show fit	leucine-rich repeat-containing protein 10-like
chr4_-_163261958 Show fit	0.00	ENSRNOT00000086390	Olr1 Links NCBI RGD Ensembl Show fit	oxidized low density lipoprotein (lectin-like) receptor 1
chr20_+_7718282 Show fit	0.00	ENSRNOT00000000593	Scube3 Links NCBI RGD Ensembl Show fit	signal peptide, CUB domain and EGF like domain containing 3
chr2_+_212257225 Show fit	0.00	ENSRNOT00000077883	Vav3 Links NCBI RGD Ensembl Show fit	vav guanine nucleotide exchange factor 3
chrX_+_20351486 Show fit	0.00	ENSRNOT00000093675 ENSRNOT00000047444	Wnk3 Links NCBI RGD Ensembl Show fit	WNK lysine deficient protein kinase 3
chrX_-_119162518 Show fit	0.00	ENSRNOT00000073176	LOC103694506 Links NCBI RGD Ensembl Show fit	ubiquitin-conjugating enzyme E2 W
chr1_-_85220237 Show fit	0.00	ENSRNOT00000026907	Sycn Links NCBI RGD Ensembl Show fit	syncollin
chr14_-_45165207 Show fit	0.00	ENSRNOT00000002960	Klf3 Links NCBI RGD Ensembl Show fit	Kruppel like factor 3
chr20_-_27657983 Show fit	0.00	ENSRNOT00000057313	Fam26e Links NCBI RGD Ensembl Show fit	family with sequence similarity 26, member E
chr6_-_7961207 Show fit	0.00	ENSRNOT00000007174	Abcg5 Links NCBI RGD Ensembl Show fit	ATP binding cassette subfamily G member 5
chr15_-_11812485 Show fit	0.00	ENSRNOT00000030991 ENSRNOT00000007795	Nek10 Links NCBI RGD Ensembl Show fit	NIMA-related kinase 10
chr2_+_147496229 Show fit	0.00	ENSRNOT00000022105	Tm4sf4 Links NCBI RGD Ensembl Show fit	transmembrane 4 L six family member 4

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Gene overrepresentation in biological process category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.1	GO:0031583	phospholipase D-activating G-protein coupled receptor signaling pathway(GO:0031583)
0.0	0.1	GO:2000041	Wnt signaling pathway involved in digestive tract morphogenesis(GO:0044333) regulation of planar cell polarity pathway involved in axis elongation(GO:2000040) negative regulation of planar cell polarity pathway involved in axis elongation(GO:2000041)
0.0	0.1	GO:0006651	diacylglycerol biosynthetic process(GO:0006651)
0.0	0.0	GO:0010903	negative regulation of very-low-density lipoprotein particle remodeling(GO:0010903)
0.0	0.1	GO:0061365	positive regulation of triglyceride lipase activity(GO:0061365)

Gene overrepresentation in cellular component category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.1	GO:1990584	cardiac Troponin complex(GO:1990584)
0.0	0.1	GO:0048237	rough endoplasmic reticulum lumen(GO:0048237)

Gene overrepresentation in molecular function category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.1	GO:0031708	endothelin B receptor binding(GO:0031708)
0.0	0.1	GO:0030172	troponin C binding(GO:0030172)
0.0	0.0	GO:0070653	high-density lipoprotein particle receptor binding(GO:0070653)

Gene overrepresentation in curated gene sets: REACTOME pathways category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.1	REACTOME GLYCOPROTEIN HORMONES	Genes involved in Glycoprotein hormones