GSE49485: Hypoxia transcriptome sequencing of rat brain.

• Motif significance table
• Sample table
• Mean activities
• All promoters sorted by FOV

• Activity table
• Activity delta table
• Regulatory interactions
• Motifs sorted by significance
• Expression table
• Download the whole report

Gene Symbol	Gene ID	Gene Info
Nkx2-4 Links NCBI RGD Ensembl	ENSRNOG00000012647	NK2 homeobox 4

Promoter	Log-likelihood	Transcript	Gene	Gene Info
chr17_-_61332391 Show fit	0.14	ENSRNOT00000034599	LOC100362965 Links NCBI RGD Ensembl Show fit	SNRPN upstream reading frame protein-like
chr15_-_60289763 Show fit	0.06	ENSRNOT00000038579	Fam216b Links NCBI RGD Ensembl Show fit	family with sequence similarity 216, member B
chr16_-_8564379 Show fit	0.06	ENSRNOT00000060975	LOC680885 Links NCBI RGD Ensembl Show fit	hypothetical protein LOC680885
chr4_-_160662974 Show fit	0.06	ENSRNOT00000089199	Tspan9 Links NCBI RGD Ensembl Show fit	tetraspanin 9
chr7_+_140742418 Show fit	0.06	ENSRNOT00000089211	Prph Links NCBI RGD Ensembl Show fit	peripherin
chr14_-_85191557 Show fit	0.05	ENSRNOT00000011604	Nefh Links NCBI RGD Ensembl Show fit	neurofilament heavy
chr7_+_136182224 Show fit	0.04	ENSRNOT00000008159	Tmem117 Links NCBI RGD Ensembl Show fit	transmembrane protein 117
chr15_-_76789298 Show fit	0.04	ENSRNOT00000077853	AABR07018857.1 Links NCBI RGD Ensembl Show fit
chr18_-_63394690 Show fit	0.03	ENSRNOT00000090078 ENSRNOT00000029431	Cep76 Links NCBI RGD Ensembl Show fit	centrosomal protein 76
chr17_-_29895386 Show fit	0.03	ENSRNOT00000048757	Cdyl Links NCBI RGD Ensembl Show fit	chromodomain Y-like
chr6_+_43001948 Show fit	0.03	ENSRNOT00000007374	Hpcal1 Links NCBI RGD Ensembl Show fit	hippocalcin-like 1
chr3_-_9936352 Show fit	0.03	ENSRNOT00000011224 ENSRNOT00000042798	Fnbp1 Links NCBI RGD Ensembl Show fit	formin binding protein 1
chr5_+_149077412 Show fit	0.03	ENSRNOT00000014666	Matn1 Links NCBI RGD Ensembl Show fit	matrilin 1, cartilage matrix protein
chr12_-_19114399 Show fit	0.02	ENSRNOT00000073099	Cyp3a9 Links NCBI RGD Ensembl Show fit	cytochrome P450, family 3, subfamily a, polypeptide 9
chr18_+_29972808 Show fit	0.02	ENSRNOT00000074051	Pcdha4 Links NCBI RGD Ensembl Show fit	protocadherin alpha 4
chr3_-_93216495 Show fit	0.02	ENSRNOT00000010580	Ehf Links NCBI RGD Ensembl Show fit	ets homologous factor
chr10_+_57606650 Show fit	0.02	ENSRNOT00000044363 ENSRNOT00000009082	Rpain Links NCBI RGD Ensembl Show fit	RPA interacting protein
chr13_-_90814119 Show fit	0.02	ENSRNOT00000011208	Tagln2 Links NCBI RGD Ensembl Show fit	transgelin 2
chr2_+_68821004 Show fit	0.02	ENSRNOT00000083713	Egf Links NCBI RGD Ensembl Show fit	epidermal growth factor
chr1_-_242765807 Show fit	0.02	ENSRNOT00000020763	Pgm5 Links NCBI RGD Ensembl Show fit	phosphoglucomutase 5
chr4_+_64088900 Show fit	0.02	ENSRNOT00000075341	Chrm2 Links NCBI RGD Ensembl Show fit	cholinergic receptor, muscarinic 2
chr16_-_23903884 Show fit	0.01	ENSRNOT00000043305	Nat3 Links NCBI RGD Ensembl Show fit	N-acetyltransferase 3
chr1_-_100671074 Show fit	0.01	ENSRNOT00000027132	Myh14 Links NCBI RGD Ensembl Show fit	myosin heavy chain 14
chrX_+_74497262 Show fit	0.01	ENSRNOT00000003899	Zcchc13 Links NCBI RGD Ensembl Show fit	zinc finger CCHC-type containing 13
chr7_+_35472102 Show fit	0.01	ENSRNOT00000010316	Tmcc3 Links NCBI RGD Ensembl Show fit	transmembrane and coiled-coil domain family 3
chr1_-_222224910 Show fit	0.01	ENSRNOT00000028720	Plcb3 Links NCBI RGD Ensembl Show fit	phospholipase C beta 3
chr4_-_49422824 Show fit	0.01	ENSRNOT00000077889	Fam3c Links NCBI RGD Ensembl Show fit	family with sequence similarity 3, member C
chr8_+_117576788 Show fit	0.01	ENSRNOT00000027584	Ip6k2 Links NCBI RGD Ensembl Show fit	inositol hexakisphosphate kinase 2
chr1_+_75233703 Show fit	0.01	ENSRNOT00000064178	LOC100911727 Links NCBI RGD Ensembl Show fit	DNA ligase 1-like
chr1_+_185863043 Show fit	0.01	ENSRNOT00000079072	Sox6 Links NCBI RGD Ensembl Show fit	SRY box 6
chr14_-_14390699 Show fit	0.01	ENSRNOT00000046639	Anxa3 Links NCBI RGD Ensembl Show fit	annexin A3
chr5_+_2632712 Show fit	0.01	ENSRNOT00000009431	Rpl7 Links NCBI RGD Ensembl Show fit	ribosomal protein L7
chr2_+_195996521 Show fit	0.01	ENSRNOT00000082849	Pogz Links NCBI RGD Ensembl Show fit	pogo transposable element with ZNF domain
chr1_-_44615760 Show fit	0.01	ENSRNOT00000022148	Nox3 Links NCBI RGD Ensembl Show fit	NADPH oxidase 3
chr2_-_235177275 Show fit	0.01	ENSRNOT00000093153	LOC103691699 Links NCBI RGD Ensembl Show fit	uncharacterized LOC103691699
chr2_-_193335002 Show fit	0.01	ENSRNOT00000012691	Lce1m Links NCBI RGD Ensembl Show fit	late cornified envelope 1M
chr12_-_2545740 Show fit	0.01	ENSRNOT00000075527	Tgfbr3l Links NCBI RGD Ensembl Show fit	transforming growth factor beta receptor 3 like
chr5_-_2632030 Show fit	0.01	ENSRNOT00000009096	Rdh10 Links NCBI RGD Ensembl Show fit	retinol dehydrogenase 10
chr8_+_119382011 Show fit	0.01	ENSRNOT00000056060	Lrrfip2 Links NCBI RGD Ensembl Show fit	LRR binding FLII interacting protein 2
chr5_-_62260089 Show fit	0.01	ENSRNOT00000064858 ENSRNOT00000011714	Tbc1d2 Links NCBI RGD Ensembl Show fit	TBC1 domain family, member 2
chr14_+_72889038 Show fit	0.01	ENSRNOT00000084261	Rab5a Links NCBI RGD Ensembl Show fit	RAB5A, member RAS oncogene family
chr2_+_68820615 Show fit	0.01	ENSRNOT00000087007 ENSRNOT00000089504	Egf Links NCBI RGD Ensembl Show fit	epidermal growth factor
chr4_+_82783686 Show fit	0.01	ENSRNOT00000041988	Tax1bp1 Links NCBI RGD Ensembl Show fit	Tax1 binding protein 1
chr1_+_170147300 Show fit	0.01	ENSRNOT00000048075	Olr200 Links NCBI RGD Ensembl Show fit	olfactory receptor 200
chr6_-_128434183 Show fit	0.01	ENSRNOT00000014405	Dicer1 Links NCBI RGD Ensembl Show fit	dicer 1 ribonuclease III
chr6_+_10306405 Show fit	0.01	ENSRNOT00000090420 ENSRNOT00000080507	Epas1 Links NCBI RGD Ensembl Show fit	endothelial PAS domain protein 1
chr9_+_95221474 Show fit	0.00	ENSRNOT00000066839	Ugt1a5 Links NCBI RGD Ensembl Show fit	UDP glucuronosyltransferase family 1 member A5
chr2_+_95320283 Show fit	0.00	ENSRNOT00000015537	Hey1 Links NCBI RGD Ensembl Show fit	hes-related family bHLH transcription factor with YRPW motif 1
chr15_-_14510828 Show fit	0.00	ENSRNOT00000039347	Sntn Links NCBI RGD Ensembl Show fit	sentan, cilia apical structure protein
chr8_-_55162421 Show fit	0.00	ENSRNOT00000083102	Dixdc1 Links NCBI RGD Ensembl Show fit	DIX domain containing 1
chr18_+_63394900 Show fit	0.00	ENSRNOT00000024126	Psmg2 Links NCBI RGD Ensembl Show fit	proteasome assembly chaperone 2
chr4_-_129430251 Show fit	0.00	ENSRNOT00000067881	Fam19a4 Links NCBI RGD Ensembl Show fit	family with sequence similarity 19 member A4, C-C motif chemokine like
chr1_+_141821916 Show fit	0.00	ENSRNOT00000071574	Echs1 Links NCBI RGD Ensembl Show fit	enoyl-CoA hydratase, short chain 1
chr2_-_192780631 Show fit	0.00	ENSRNOT00000012371	Smcp Links NCBI RGD Ensembl Show fit	sperm mitochondria-associated cysteine-rich protein
chr16_-_82099991 Show fit	0.00	ENSRNOT00000089447	Atp11a Links NCBI RGD Ensembl Show fit	ATPase phospholipid transporting 11A
chr1_-_212579057 Show fit	0.00	ENSRNOT00000025446	LOC100911186 Links NCBI RGD Ensembl Show fit	enoyl-CoA hydratase, mitochondrial-like
chr2_+_4989295 Show fit	0.00	ENSRNOT00000041541	Fam172a Links NCBI RGD Ensembl Show fit	family with sequence similarity 172, member A
chrX_+_33528081 Show fit	0.00	ENSRNOT00000006584	Syap1 Links NCBI RGD Ensembl Show fit	synapse associated protein 1
chr1_-_67134827 Show fit	0.00	ENSRNOT00000045214	Vom1r45 Links NCBI RGD Ensembl Show fit	vomeronasal 1 receptor 45
chr12_-_13133219 Show fit	0.00	ENSRNOT00000092292	Daglb Links NCBI RGD Ensembl Show fit	diacylglycerol lipase, beta
chr16_-_55132191 Show fit	0.00	ENSRNOT00000017025	Micu3 Links NCBI RGD Ensembl Show fit	mitochondrial calcium uptake family, member 3

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Gene overrepresentation in biological process category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.0	GO:0033693	neurofilament bundle assembly(GO:0033693)

Gene overrepresentation in cellular component category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.1	GO:0044299	C-fiber(GO:0044299)