GSE49485: Hypoxia transcriptome sequencing of rat brain.

• Motif significance table
• Sample table
• Mean activities
• All promoters sorted by FOV

• Activity table
• Activity delta table
• Regulatory interactions
• Motifs sorted by significance
• Expression table
• Download the whole report

Gene Symbol	Gene ID	Gene Info

Promoter	Log-likelihood	Transcript	Gene	Gene Info
chr2_-_260596777 Show fit	0.07	ENSRNOT00000009370	Lhx8 Links NCBI RGD Ensembl Show fit	LIM homeobox 8
chr1_+_89220083 Show fit	0.04	ENSRNOT00000093144	Dmkn Links NCBI RGD Ensembl Show fit	dermokine
chr1_+_72661211 Show fit	0.03	ENSRNOT00000033197	Cox6b2 Links NCBI RGD Ensembl Show fit	cytochrome c oxidase subunit VIb polypeptide 2
chr4_+_123586231 Show fit	0.02	ENSRNOT00000049657 ENSRNOT00000013232	Grip2 Links NCBI RGD Ensembl Show fit	glutamate receptor interacting protein 2
chr8_-_87315955 Show fit	0.02	ENSRNOT00000081437	Filip1 Links NCBI RGD Ensembl Show fit	filamin A interacting protein 1
chr5_+_138300107 Show fit	0.02	ENSRNOT00000047151	Cldn19 Links NCBI RGD Ensembl Show fit	claudin 19
chr19_+_60017746 Show fit	0.02	ENSRNOT00000042623	Pard3 Links NCBI RGD Ensembl Show fit	par-3 family cell polarity regulator
chr4_+_117962319 Show fit	0.02	ENSRNOT00000057441	Tgfa Links NCBI RGD Ensembl Show fit	transforming growth factor alpha
chr5_+_48303366 Show fit	0.02	ENSRNOT00000009973	Gabrr2 Links NCBI RGD Ensembl Show fit	gamma-aminobutyric acid type A receptor rho 2 subunit
chr5_-_115387377 Show fit	0.02	ENSRNOT00000036030 ENSRNOT00000077492	RGD1560146 Links NCBI RGD Ensembl Show fit	similar to hypothetical protein MGC34837
chr1_-_266074181 Show fit	0.02	ENSRNOT00000026378	Psd Links NCBI RGD Ensembl Show fit	pleckstrin and Sec7 domain containing
chr3_+_112242270 Show fit	0.01	ENSRNOT00000080533 ENSRNOT00000082876	Capn3 Links NCBI RGD Ensembl Show fit	calpain 3
chr6_-_132958546 Show fit	0.01	ENSRNOT00000041903	Begain Links NCBI RGD Ensembl Show fit	brain-enriched guanylate kinase-associated
chr8_-_107490093 Show fit	0.01	ENSRNOT00000046832	LOC684466 Links NCBI RGD Ensembl Show fit	similar to Fas apoptotic inhibitory molecule 1 (rFAIM)
chr10_-_55560422 Show fit	0.01	ENSRNOT00000006883	Rangrf Links NCBI RGD Ensembl Show fit	RAN guanine nucleotide release factor
chr12_-_22477052 Show fit	0.01	ENSRNOT00000075504	Ache Links NCBI RGD Ensembl Show fit	acetylcholinesterase
chr10_-_103481153 Show fit	0.01	ENSRNOT00000035639	Cd300lb Links NCBI RGD Ensembl Show fit	CD300 molecule-like family member b
chr3_+_43255567 Show fit	0.01	ENSRNOT00000044419	Gpd2 Links NCBI RGD Ensembl Show fit	glycerol-3-phosphate dehydrogenase 2
chr18_-_37776453 Show fit	0.01	ENSRNOT00000087876	Dpysl3 Links NCBI RGD Ensembl Show fit	dihydropyrimidinase-like 3
chr2_+_208738132 Show fit	0.01	ENSRNOT00000023972	AABR07012795.1 Links NCBI RGD Ensembl Show fit
chr19_+_51985170 Show fit	0.01	ENSRNOT00000019443	Hsbp1 Links NCBI RGD Ensembl Show fit	heat shock factor binding protein 1
chr1_-_175796040 Show fit	0.01	ENSRNOT00000024060	Mrvi1 Links NCBI RGD Ensembl Show fit	murine retrovirus integration site 1 homolog
chrX_-_116638508 Show fit	0.01	ENSRNOT00000030400	Lhfpl1 Links NCBI RGD Ensembl Show fit	lipoma HMGIC fusion partner-like 1
chr5_-_61734011 Show fit	0.01	ENSRNOT00000012915	Tstd2 Links NCBI RGD Ensembl Show fit	thiosulfate sulfurtransferase like domain containing 2
chr13_+_77940454 Show fit	0.01	ENSRNOT00000003460	Mrps14 Links NCBI RGD Ensembl Show fit	mitochondrial ribosomal protein S14
chr10_-_91807937 Show fit	0.01	ENSRNOT00000005074	Wnt9b Links NCBI RGD Ensembl Show fit	wingless-type MMTV integration site family, member 9B
chr15_-_45524582 Show fit	0.01	ENSRNOT00000081912	Gucy1b2 Links NCBI RGD Ensembl Show fit	guanylate cyclase 1 soluble subunit beta 2
chr9_+_10044756 Show fit	0.01	ENSRNOT00000071188	Pspn Links NCBI RGD Ensembl Show fit	persephin
chr5_-_162602339 Show fit	0.01	ENSRNOT00000071779	RGD1563334 Links NCBI RGD Ensembl Show fit	similar to novel protein similar to esterases
chr10_+_54512983 Show fit	0.01	ENSRNOT00000005204	Stx8 Links NCBI RGD Ensembl Show fit	syntaxin 8
chr2_+_93712992 Show fit	0.01	ENSRNOT00000059326	Fabp12 Links NCBI RGD Ensembl Show fit	fatty acid binding protein 12
chrM_+_7758 Show fit	0.01	ENSRNOT00000046201	Mt-atp8 Links NCBI RGD Ensembl Show fit	mitochondrially encoded ATP synthase 8
chrM_+_7919 Show fit	0.00	ENSRNOT00000046108	Mt-atp6 Links NCBI RGD Ensembl Show fit	mitochondrially encoded ATP synthase 6
chr4_-_100783750 Show fit	0.00	ENSRNOT00000078956	Kcmf1 Links NCBI RGD Ensembl Show fit	potassium channel modulatory factor 1
chr7_+_94795214 Show fit	0.00	ENSRNOT00000005722	Deptor Links NCBI RGD Ensembl Show fit	DEP domain containing MTOR-interacting protein
chr7_-_49741540 Show fit	0.00	ENSRNOT00000006523	Myf6 Links NCBI RGD Ensembl Show fit	myogenic factor 6
chr18_+_40962146 Show fit	0.00	ENSRNOT00000035656	Arl14epl Links NCBI RGD Ensembl Show fit	ADP ribosylation factor like GTPase 14 effector protein like
chr1_+_213676954 Show fit	0.00	ENSRNOT00000050551	Nlrp6 Links NCBI RGD Ensembl Show fit	NLR family, pyrin domain containing 6
chr8_-_116465801 Show fit	0.00	ENSRNOT00000085915	Sema3f Links NCBI RGD Ensembl Show fit	semaphorin 3F
chr2_-_218658761 Show fit	0.00	ENSRNOT00000018318	S1pr1 Links NCBI RGD Ensembl Show fit	sphingosine-1-phosphate receptor 1
chr10_+_56605140 Show fit	0.00	ENSRNOT00000024079	Phf23 Links NCBI RGD Ensembl Show fit	PHD finger protein 23
chr7_-_27213651 Show fit	0.00	ENSRNOT00000077041 ENSRNOT00000076468	Tdg Links NCBI RGD Ensembl Show fit	thymine-DNA glycosylase
chr10_-_55851235 Show fit	0.00	ENSRNOT00000010790	Gucy2d Links NCBI RGD Ensembl Show fit	guanylate cyclase 2D, retinal
chr18_+_56544652 Show fit	0.00	ENSRNOT00000024171	Pde6a Links NCBI RGD Ensembl Show fit	phosphodiesterase 6A
chr6_-_26855658 Show fit	0.00	ENSRNOT00000011635	Agbl5 Links NCBI RGD Ensembl Show fit	ATP/GTP binding protein-like 5
chr8_+_94686938 Show fit	0.00	ENSRNOT00000013285	Ripply2 Links NCBI RGD Ensembl Show fit	ripply transcriptional repressor 2
chr5_+_159484370 Show fit	0.00	ENSRNOT00000010593	Sdhb Links NCBI RGD Ensembl Show fit	succinate dehydrogenase complex iron sulfur subunit B
chr5_+_61734118 Show fit	0.00	ENSRNOT00000030825	Ncbp1 Links NCBI RGD Ensembl Show fit	nuclear cap binding protein subunit 1
chr1_+_213686046 Show fit	0.00	ENSRNOT00000019808	LOC108348167 Links NCBI RGD Ensembl Show fit	NACHT, LRR and PYD domains-containing protein 6-like
chr10_+_83954279 Show fit	0.00	ENSRNOT00000006594	Ttll6 Links NCBI RGD Ensembl Show fit	tubulin tyrosine ligase like 6
chr5_+_81431600 Show fit	0.00	ENSRNOT00000013675	Trim32 Links NCBI RGD Ensembl Show fit	tripartite motif-containing 32
chr5_-_77031120 Show fit	0.00	ENSRNOT00000022987	Inip Links NCBI RGD Ensembl Show fit	INTS3 and NABP interacting protein
chr7_-_27214236 Show fit	0.00	ENSRNOT00000034213	Tdg Links NCBI RGD Ensembl Show fit	thymine-DNA glycosylase
chr10_-_15305549 Show fit	0.00	ENSRNOT00000027353	Pigq Links NCBI RGD Ensembl Show fit	phosphatidylinositol glycan anchor biosynthesis, class Q
chr19_+_9622611 Show fit	0.00	ENSRNOT00000061498	Slc38a7 Links NCBI RGD Ensembl Show fit	solute carrier family 38, member 7
chr1_-_22404002 Show fit	0.00	ENSRNOT00000044098	Taar8a Links NCBI RGD Ensembl Show fit	trace amine-associated receptor 8a
chr2_+_187988925 Show fit	0.00	ENSRNOT00000093033 ENSRNOT00000093016	Arhgef2 Links NCBI RGD Ensembl Show fit	Rho/Rac guanine nucleotide exchange factor 2
chr11_-_80981415 Show fit	0.00	ENSRNOT00000002499 ENSRNOT00000002496	St6gal1 Links NCBI RGD Ensembl Show fit	ST6 beta-galactoside alpha-2,6-sialyltransferase 1
chr5_+_98387291 Show fit	0.00	ENSRNOT00000046503	Tyrp1 Links NCBI RGD Ensembl Show fit	tyrosinase-related protein 1
chr10_+_89459650 Show fit	0.00	ENSRNOT00000028149 ENSRNOT00000077942	Nbr1 Links NCBI RGD Ensembl Show fit	NBR1, autophagy cargo receptor
chr2_+_60966789 Show fit	0.00	ENSRNOT00000025490	Slc45a2 Links NCBI RGD Ensembl Show fit	solute carrier family 45, member 2

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Gene overrepresentation in cellular component category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.1	GO:0001674	female germ cell nucleus(GO:0001674)