GSE49485: Hypoxia transcriptome sequencing of rat brain.
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
Stat2 | rn6_v1_chr7_+_2694440_2694440 | -0.64 | 2.5e-01 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr12_-_47482961 Show fit | 0.57 |
ENSRNOT00000001600
|
2'-5' oligoadenylate synthetase-like 2 |
|
chr1_-_214252456 Show fit | 0.51 |
ENSRNOT00000023504
|
interferon regulatory factor 7 |
|
chr17_+_9236249 Show fit | 0.47 |
ENSRNOT00000015878
|
TIFA inhibitor |
|
chr1_+_53220397 Show fit | 0.44 |
ENSRNOT00000089989
|
|
|
chr2_+_248178389 Show fit | 0.39 |
ENSRNOT00000037339
|
guanylate binding protein 5 |
|
chr10_+_64737022 Show fit | 0.39 |
ENSRNOT00000017071
ENSRNOT00000093232 ENSRNOT00000017042 ENSRNOT00000093244 |
galectin 9 |
|
chr20_+_3979035 Show fit | 0.35 |
ENSRNOT00000000529
|
transporter 1, ATP binding cassette subfamily B member |
|
chr15_+_60084918 Show fit | 0.32 |
ENSRNOT00000012632
|
epithelial stromal interaction 1 |
|
chr2_-_256915563 Show fit | 0.32 |
ENSRNOT00000084873
ENSRNOT00000029990 |
interferon-induced protein 44 |
|
chr9_-_44483655 Show fit | 0.31 |
ENSRNOT00000024959
|
microtubule interacting and trafficking domain containing 1 |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 0.6 | GO:0035458 | cellular response to interferon-beta(GO:0035458) |
0.2 | 0.5 | GO:0007356 | thorax and anterior abdomen determination(GO:0007356) |
0.1 | 0.5 | GO:0034124 | regulation of MyD88-dependent toll-like receptor signaling pathway(GO:0034124) |
0.1 | 0.5 | GO:0071985 | multivesicular body sorting pathway(GO:0071985) |
0.1 | 0.4 | GO:0046967 | cytosol to ER transport(GO:0046967) peptide antigen transport(GO:0046968) |
0.1 | 0.4 | GO:2001190 | regulation of natural killer cell degranulation(GO:0043321) positive regulation of T cell activation via T cell receptor contact with antigen bound to MHC molecule on antigen presenting cell(GO:2001190) |
0.0 | 0.4 | GO:0032621 | interleukin-18 production(GO:0032621) |
0.0 | 0.4 | GO:0003374 | dynamin polymerization involved in membrane fission(GO:0003373) dynamin polymerization involved in mitochondrial fission(GO:0003374) |
0.1 | 0.3 | GO:0042509 | CD8-positive, alpha-beta T cell extravasation(GO:0035697) regulation of tyrosine phosphorylation of STAT protein(GO:0042509) positive regulation of tyrosine phosphorylation of STAT protein(GO:0042531) |
0.1 | 0.3 | GO:0032020 | ISG15-protein conjugation(GO:0032020) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 0.4 | GO:0042825 | TAP complex(GO:0042825) |
0.1 | 0.2 | GO:0005592 | collagen type XI trimer(GO:0005592) |
0.0 | 0.2 | GO:0020005 | symbiont-containing vacuole membrane(GO:0020005) |
0.0 | 0.2 | GO:0008024 | cyclin/CDK positive transcription elongation factor complex(GO:0008024) |
0.0 | 0.1 | GO:0008537 | proteasome activator complex(GO:0008537) |
0.0 | 0.1 | GO:1990111 | spermatoproteasome complex(GO:1990111) |
0.0 | 0.1 | GO:0042406 | extrinsic component of endoplasmic reticulum membrane(GO:0042406) |
0.0 | 0.1 | GO:1990682 | CSF1-CSF1R complex(GO:1990682) |
0.0 | 0.1 | GO:0097487 | multivesicular body, internal vesicle(GO:0097487) |
0.0 | 0.1 | GO:1990712 | HFE-transferrin receptor complex(GO:1990712) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 0.9 | GO:0001730 | 2'-5'-oligoadenylate synthetase activity(GO:0001730) |
0.0 | 0.5 | GO:0003950 | NAD+ ADP-ribosyltransferase activity(GO:0003950) |
0.1 | 0.4 | GO:0046980 | peptide antigen-transporting ATPase activity(GO:0015433) tapasin binding(GO:0046980) |
0.1 | 0.4 | GO:0048030 | disaccharide binding(GO:0048030) |
0.1 | 0.3 | GO:0048019 | receptor antagonist activity(GO:0048019) |
0.0 | 0.3 | GO:0031386 | protein tag(GO:0031386) |
0.0 | 0.2 | GO:0005136 | interleukin-4 receptor binding(GO:0005136) |
0.0 | 0.2 | GO:0048248 | CXCR3 chemokine receptor binding(GO:0048248) |
0.0 | 0.2 | GO:0042289 | MHC class II protein binding(GO:0042289) |
0.0 | 0.2 | GO:0097322 | 7SK snRNA binding(GO:0097322) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 0.5 | PID SYNDECAN 1 PATHWAY | Syndecan-1-mediated signaling events |
0.0 | 0.4 | ST GA12 PATHWAY | G alpha 12 Pathway |
0.0 | 0.2 | PID IL27 PATHWAY | IL27-mediated signaling events |
0.0 | 0.2 | SA MMP CYTOKINE CONNECTION | Cytokines can induce activation of matrix metalloproteinases, which degrade extracellular matrix. |
0.0 | 0.1 | ST TYPE I INTERFERON PATHWAY | Type I Interferon (alpha/beta IFN) Pathway |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 1.6 | REACTOME INTERFERON ALPHA BETA SIGNALING | Genes involved in Interferon alpha/beta signaling |
0.0 | 0.8 | REACTOME CHEMOKINE RECEPTORS BIND CHEMOKINES | Genes involved in Chemokine receptors bind chemokines |
0.1 | 0.5 | REACTOME TRAF6 MEDIATED IRF7 ACTIVATION IN TLR7 8 OR 9 SIGNALING | Genes involved in TRAF6 mediated IRF7 activation in TLR7/8 or 9 signaling |
0.0 | 0.5 | REACTOME INTERFERON GAMMA SIGNALING | Genes involved in Interferon gamma signaling |
0.0 | 0.4 | REACTOME ANTIGEN PRESENTATION FOLDING ASSEMBLY AND PEPTIDE LOADING OF CLASS I MHC | Genes involved in Antigen Presentation: Folding, assembly and peptide loading of class I MHC |
0.0 | 0.3 | REACTOME TRAF6 MEDIATED IRF7 ACTIVATION | Genes involved in TRAF6 mediated IRF7 activation |
0.0 | 0.2 | REACTOME REGULATION OF COMPLEMENT CASCADE | Genes involved in Regulation of Complement cascade |