GSE49485: Hypoxia transcriptome sequencing of rat brain.

• Motif significance table
• Sample table
• Mean activities
• All promoters sorted by FOV

• Activity table
• Activity delta table
• Regulatory interactions
• Motifs sorted by significance
• Expression table
• Download the whole report

Gene Symbol	Gene ID	Gene Info
Pax2 Links NCBI RGD Ensembl	ENSRNOG00000014253	paired box 2

Gene	Promoter	Pearson corr. coef.	P-value	Plot
Pax2	rn6_v1_chr1_+_264504591_264504591	-0.35	5.6e-01	Click!

Promoter	Log-likelihood	Transcript	Gene	Gene Info
chr4_+_33638709 Show fit	0.03	ENSRNOT00000009888 ENSRNOT00000034719 ENSRNOT00000052333	Tac1 Links NCBI RGD Ensembl Show fit	tachykinin, precursor 1
chr3_-_161299024 Show fit	0.01	ENSRNOT00000021216	Neurl2 Links NCBI RGD Ensembl Show fit	neuralized E3 ubiquitin protein ligase 2
chr2_-_197991198 Show fit	0.01	ENSRNOT00000056322	Ciart Links NCBI RGD Ensembl Show fit	circadian associated repressor of transcription
chr2_-_197991574 Show fit	0.01	ENSRNOT00000085632	Ciart Links NCBI RGD Ensembl Show fit	circadian associated repressor of transcription
chr10_-_56276764 Show fit	0.01	ENSRNOT00000049048	Eif4a1 Links NCBI RGD Ensembl Show fit	eukaryotic translation initiation factor 4A1
chr19_+_37229120 Show fit	0.01	ENSRNOT00000076335	Hsf4 Links NCBI RGD Ensembl Show fit	heat shock transcription factor 4
chr1_+_154377247 Show fit	0.01	ENSRNOT00000092945	Picalm Links NCBI RGD Ensembl Show fit	phosphatidylinositol binding clathrin assembly protein
chrX_-_54303729 Show fit	0.01	ENSRNOT00000087919 ENSRNOT00000064340 ENSRNOT00000051249 ENSRNOT00000087547	Gk Links NCBI RGD Ensembl Show fit	glycerol kinase
chr13_-_42263024 Show fit	0.01	ENSRNOT00000004741	Lypd1 Links NCBI RGD Ensembl Show fit	Ly6/Plaur domain containing 1
chr6_+_108167716 Show fit	0.01	ENSRNOT00000064426	Lin52 Links NCBI RGD Ensembl Show fit	lin-52 DREAM MuvB core complex component
chr5_+_64326733 Show fit	0.01	ENSRNOT00000065775	Tmeff1 Links NCBI RGD Ensembl Show fit	transmembrane protein with EGF-like and two follistatin-like domains 1
chr2_+_189400696 Show fit	0.01	ENSRNOT00000046919 ENSRNOT00000089801	LOC361985 Links NCBI RGD Ensembl Show fit	similar to NICE-3
chr7_-_92882068 Show fit	0.01	ENSRNOT00000037809	Ext1 Links NCBI RGD Ensembl Show fit	exostosin glycosyltransferase 1
chrX_+_77263359 Show fit	0.01	ENSRNOT00000077604	Pgk1 Links NCBI RGD Ensembl Show fit	phosphoglycerate kinase 1
chr11_-_60613718 Show fit	0.00	ENSRNOT00000002906	Atg3 Links NCBI RGD Ensembl Show fit	autophagy related 3
chr6_+_28663602 Show fit	0.00	ENSRNOT00000005402	Ptrhd1 Links NCBI RGD Ensembl Show fit	peptidyl-tRNA hydrolase domain containing 1
chr10_+_55940533 Show fit	0.00	ENSRNOT00000012061	RGD1563441 Links NCBI RGD Ensembl Show fit	similar to RIKEN cDNA A030009H04
chr10_-_56839437 Show fit	0.00	ENSRNOT00000090338	Bcl6b Links NCBI RGD Ensembl Show fit	B-cell CLL/lymphoma 6B
chr9_-_113331319 Show fit	0.00	ENSRNOT00000020681	Vapa Links NCBI RGD Ensembl Show fit	VAMP associated protein A
chr12_+_19303387 Show fit	0.00	ENSRNOT00000001820	Cops6 Links NCBI RGD Ensembl Show fit	COP9 signalosome subunit 6
chr8_-_58253688 Show fit	0.00	ENSRNOT00000010956	Cul5 Links NCBI RGD Ensembl Show fit	cullin 5
chr5_+_128629942 Show fit	0.00	ENSRNOT00000010462 ENSRNOT00000010440	Nrdc Links NCBI RGD Ensembl Show fit	nardilysin convertase
chr5_+_147375350 Show fit	0.00	ENSRNOT00000010674	Yars Links NCBI RGD Ensembl Show fit	tyrosyl-tRNA synthetase
chr1_+_102849889 Show fit	0.00	ENSRNOT00000066791	Gtf2h1 Links NCBI RGD Ensembl Show fit	general transcription factor IIH subunit 1
chr1_-_198232344 Show fit	0.00	ENSRNOT00000080988	Aldoa Links NCBI RGD Ensembl Show fit	aldolase, fructose-bisphosphate A
chr4_-_60358562 Show fit	0.00	ENSRNOT00000018001	Chchd3 Links NCBI RGD Ensembl Show fit	coiled-coil-helix-coiled-coil-helix domain containing 3
chr3_+_113415774 Show fit	0.00	ENSRNOT00000056151	Serf2 Links NCBI RGD Ensembl Show fit	small EDRK-rich factor 2
chr12_+_37594185 Show fit	0.00	ENSRNOT00000088787	Sbno1 Links NCBI RGD Ensembl Show fit	strawberry notch homolog 1
chr1_-_219450451 Show fit	0.00	ENSRNOT00000025317	Rad9a Links NCBI RGD Ensembl Show fit	RAD9 checkpoint clamp component A
chr20_-_5533600 Show fit	0.00	ENSRNOT00000072319	Cuta Links NCBI RGD Ensembl Show fit	cutA divalent cation tolerance homolog
chr6_-_109205004 Show fit	0.00	ENSRNOT00000010512	Tmed10 Links NCBI RGD Ensembl Show fit	transmembrane p24 trafficking protein 10
chr20_-_5533448 Show fit	0.00	ENSRNOT00000000568	Cuta Links NCBI RGD Ensembl Show fit	cutA divalent cation tolerance homolog
chr17_+_85356042 Show fit	0.00	ENSRNOT00000022201	Commd3 Links NCBI RGD Ensembl Show fit	COMM domain containing 3
chr10_+_38692211 Show fit	0.00	ENSRNOT00000009440	Aff4 Links NCBI RGD Ensembl Show fit	AF4/FMR2 family, member 4
chr7_-_70498992 Show fit	0.00	ENSRNOT00000067774 ENSRNOT00000079327	Pip4k2c Links NCBI RGD Ensembl Show fit	phosphatidylinositol-5-phosphate 4-kinase type 2 gamma
chr5_+_78222504 Show fit	0.00	ENSRNOT00000019544	Slc31a1 Links NCBI RGD Ensembl Show fit	solute carrier family 31 member 1
chr2_+_207108552 Show fit	0.00	ENSRNOT00000027234	Slc16a1 Links NCBI RGD Ensembl Show fit	solute carrier family 16 member 1
chr19_-_37525762 Show fit	0.00	ENSRNOT00000023606	Atp6v0d1 Links NCBI RGD Ensembl Show fit	ATPase H+ transporting V0 subunit D1
chr8_-_48674748 Show fit	0.00	ENSRNOT00000014127	Hmbs Links NCBI RGD Ensembl Show fit	hydroxymethylbilane synthase
chr9_-_16647458 Show fit	0.00	ENSRNOT00000024380	Mrpl2 Links NCBI RGD Ensembl Show fit	mitochondrial ribosomal protein L2
chr20_+_6288267 Show fit	0.00	ENSRNOT00000000627	Srsf3 Links NCBI RGD Ensembl Show fit	serine and arginine rich splicing factor 3
chr3_-_23510959 Show fit	0.00	ENSRNOT00000021176	Ppp6c Links NCBI RGD Ensembl Show fit	protein phosphatase 6, catalytic subunit
chr16_-_10941414 Show fit	0.00	ENSRNOT00000086627 ENSRNOT00000085414 ENSRNOT00000081631 ENSRNOT00000087521 ENSRNOT00000083623	Ldb3 Links NCBI RGD Ensembl Show fit	LIM domain binding 3
chr3_+_161298962 Show fit	0.00	ENSRNOT00000066028	Ctsa Links NCBI RGD Ensembl Show fit	cathepsin A
chr7_-_12741296 Show fit	0.00	ENSRNOT00000060648	Arhgap45 Links NCBI RGD Ensembl Show fit	Rho GTPase activating protein 45
chr13_+_26172243 Show fit	0.00	ENSRNOT00000003840	Phlpp1 Links NCBI RGD Ensembl Show fit	PH domain and leucine rich repeat protein phosphatase 1
chr7_+_53878610 Show fit	0.00	ENSRNOT00000091910	Osbpl8 Links NCBI RGD Ensembl Show fit	oxysterol binding protein-like 8
chr12_+_37593874 Show fit	0.00	ENSRNOT00000057902	Sbno1 Links NCBI RGD Ensembl Show fit	strawberry notch homolog 1
chr10_+_84135116 Show fit	0.00	ENSRNOT00000031035	Hoxb7 Links NCBI RGD Ensembl Show fit	homeo box B7
chr13_-_101697684 Show fit	0.00	ENSRNOT00000078834	Brox Links NCBI RGD Ensembl Show fit	BRO1 domain and CAAX motif containing

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