GSE49485: Hypoxia transcriptome sequencing of rat brain.

• Motif significance table
• Sample table
• Mean activities
• All promoters sorted by FOV

• Activity table
• Activity delta table
• Regulatory interactions
• Motifs sorted by significance
• Expression table
• Download the whole report

Gene Symbol	Gene ID	Gene Info
Foxc2 Links NCBI RGD Ensembl	ENSRNOG00000047446	forkhead box C2

Gene	Promoter	Pearson corr. coef.	P-value	Plot
Foxc2	rn6_v1_chr19_+_53044379_53044379	0.25	6.9e-01	Click!

Promoter	Log-likelihood	Transcript	Gene	Gene Info
chr2_+_145174876 Show fit	0.70	ENSRNOT00000040631	Mab21l1 Links NCBI RGD Ensembl Show fit	mab-21 like 1
chr10_-_71849293 Show fit	0.42	ENSRNOT00000003799	Lhx1 Links NCBI RGD Ensembl Show fit	LIM homeobox 1
chr4_+_51614676 Show fit	0.37	ENSRNOT00000060494	Asb15 Links NCBI RGD Ensembl Show fit	ankyrin repeat and SOCS box containing 15
chr18_-_15540177 Show fit	0.37	ENSRNOT00000022113	Ttr Links NCBI RGD Ensembl Show fit	transthyretin
chr15_-_25505691 Show fit	0.16	ENSRNOT00000074488	LOC100911492 Links NCBI RGD Ensembl Show fit	homeobox protein OTX2-like
chr18_-_5314511 Show fit	0.15	ENSRNOT00000022637 ENSRNOT00000079682	Zfp521 Links NCBI RGD Ensembl Show fit	zinc finger protein 521
chr20_+_46429222 Show fit	0.13	ENSRNOT00000076818	Foxo3 Links NCBI RGD Ensembl Show fit	forkhead box O3
chr14_+_42714315 Show fit	0.11	ENSRNOT00000084095 ENSRNOT00000091449	Phox2b Links NCBI RGD Ensembl Show fit	paired-like homeobox 2b
chr4_-_115239723 Show fit	0.11	ENSRNOT00000042699	Actg2 Links NCBI RGD Ensembl Show fit	actin, gamma 2, smooth muscle, enteric
chr2_-_3124543 Show fit	0.10	ENSRNOT00000036547	Fam81b Links NCBI RGD Ensembl Show fit	family with sequence similarity 81, member B
chr9_+_51298426 Show fit	0.09	ENSRNOT00000065212	Gulp1 Links NCBI RGD Ensembl Show fit	GULP, engulfment adaptor PTB domain containing 1
chr1_+_154606490 Show fit	0.08	ENSRNOT00000024095	Ccdc89 Links NCBI RGD Ensembl Show fit	coiled-coil domain containing 89
chr1_+_29432152 Show fit	0.08	ENSRNOT00000019436 ENSRNOT00000083276	Trmt11 Links NCBI RGD Ensembl Show fit	tRNA methyltransferase 11 homolog
chr7_-_114848414 Show fit	0.07	ENSRNOT00000032620	Slc45a4 Links NCBI RGD Ensembl Show fit	solute carrier family 45, member 4
chr1_+_227592635 Show fit	0.07	ENSRNOT00000072135	Ms4a4a Links NCBI RGD Ensembl Show fit	membrane-spanning 4-domains, subfamily A, member 4A
chr16_+_27399467 Show fit	0.07	ENSRNOT00000065642	Tll1 Links NCBI RGD Ensembl Show fit	tolloid-like 1
chr1_-_156327352 Show fit	0.06	ENSRNOT00000074282	LOC100911776 Links NCBI RGD Ensembl Show fit	coiled-coil domain-containing protein 89-like
chr7_+_130071122 Show fit	0.06	ENSRNOT00000078620	Selenoo Links NCBI RGD Ensembl Show fit	selenoprotein O
chr18_-_58097316 Show fit	0.06	ENSRNOT00000088527	AABR07032265.1 Links NCBI RGD Ensembl Show fit
chr6_-_44363915 Show fit	0.06	ENSRNOT00000085925	Id2 Links NCBI RGD Ensembl Show fit	inhibitor of DNA binding 2, HLH protein
chr4_-_176528110 Show fit	0.06	ENSRNOT00000049569	Slco1a2 Links NCBI RGD Ensembl Show fit	solute carrier organic anion transporter family, member 1A2
chr2_-_30634243 Show fit	0.06	ENSRNOT00000077537	Marveld2 Links NCBI RGD Ensembl Show fit	MARVEL domain containing 2
chr6_-_104631355 Show fit	0.05	ENSRNOT00000007825	Slc10a1 Links NCBI RGD Ensembl Show fit	solute carrier family 10 member 1
chr15_-_95514259 Show fit	0.05	ENSRNOT00000038433	Slitrk6 Links NCBI RGD Ensembl Show fit	SLIT and NTRK-like family, member 6
chr3_+_60024013 Show fit	0.05	ENSRNOT00000025255	Scrn3 Links NCBI RGD Ensembl Show fit	secernin 3
chr4_+_62221011 Show fit	0.05	ENSRNOT00000041264	Cald1 Links NCBI RGD Ensembl Show fit	caldesmon 1
chr3_+_95939260 Show fit	0.05	ENSRNOT00000041291	AABR07053188.1 Links NCBI RGD Ensembl Show fit
chr13_+_78979321 Show fit	0.05	ENSRNOT00000003857	Ankrd45 Links NCBI RGD Ensembl Show fit	ankyrin repeat domain 45
chr16_+_47665816 Show fit	0.05	ENSRNOT00000030519	Cdkn2aip Links NCBI RGD Ensembl Show fit	CDKN2A interacting protein
chr6_+_95826546 Show fit	0.04	ENSRNOT00000043587	AABR07064810.1 Links NCBI RGD Ensembl Show fit
chr1_+_264741911 Show fit	0.04	ENSRNOT00000019956	Sema4g Links NCBI RGD Ensembl Show fit	semaphorin 4G
chr3_+_149624712 Show fit	0.04	ENSRNOT00000018581	Bpifa1 Links NCBI RGD Ensembl Show fit	BPI fold containing family A, member 1
chr4_+_179481263 Show fit	0.04	ENSRNOT00000021284	Etfrf1 Links NCBI RGD Ensembl Show fit	electron transfer flavoprotein regulatory factor 1
chr2_+_195996521 Show fit	0.04	ENSRNOT00000082849	Pogz Links NCBI RGD Ensembl Show fit	pogo transposable element with ZNF domain
chr6_-_51257625 Show fit	0.04	ENSRNOT00000012004	Hbp1 Links NCBI RGD Ensembl Show fit	HMG-box transcription factor 1
chr4_+_62220736 Show fit	0.03	ENSRNOT00000086377	Cald1 Links NCBI RGD Ensembl Show fit	caldesmon 1
chr4_+_62380914 Show fit	0.03	ENSRNOT00000029845	Tmem140 Links NCBI RGD Ensembl Show fit	transmembrane protein 140
chr4_+_139670092 Show fit	0.03	ENSRNOT00000008879	Lrrn1 Links NCBI RGD Ensembl Show fit	leucine rich repeat neuronal 1
chr13_+_97838361 Show fit	0.03	ENSRNOT00000003641	Cnst Links NCBI RGD Ensembl Show fit	consortin, connexin sorting protein
chr2_-_233743866 Show fit	0.03	ENSRNOT00000087062	Enpep Links NCBI RGD Ensembl Show fit	glutamyl aminopeptidase
chr3_-_60023913 Show fit	0.03	ENSRNOT00000064662	Cir1 Links NCBI RGD Ensembl Show fit	corepressor interacting with RBPJ, 1
chr10_-_85825735 Show fit	0.03	ENSRNOT00000055379	Fbxo47 Links NCBI RGD Ensembl Show fit	F-box protein 47
chr13_-_97838228 Show fit	0.03	ENSRNOT00000003618	Tfb2m Links NCBI RGD Ensembl Show fit	transcription factor B2, mitochondrial
chr2_-_172361779 Show fit	0.03	ENSRNOT00000085876	Schip1 Links NCBI RGD Ensembl Show fit	schwannomin interacting protein 1
chr10_+_105393072 Show fit	0.02	ENSRNOT00000013359	Ubald2 Links NCBI RGD Ensembl Show fit	UBA-like domain containing 2
chr8_-_61595032 Show fit	0.02	ENSRNOT00000023428	Snx33 Links NCBI RGD Ensembl Show fit	sorting nexin 33
chr9_-_55256340 Show fit	0.02	ENSRNOT00000028907	Sdpr Links NCBI RGD Ensembl Show fit	serum deprivation response
chr18_-_69671199 Show fit	0.02	ENSRNOT00000082484	Smad4 Links NCBI RGD Ensembl Show fit	SMAD family member 4
chr20_-_31597830 Show fit	0.02	ENSRNOT00000085877	Col13a1 Links NCBI RGD Ensembl Show fit	collagen type XIII alpha 1 chain
chrX_+_78991223 Show fit	0.02	ENSRNOT00000031200	Fam46d Links NCBI RGD Ensembl Show fit	family with sequence similarity 46, member D
chr7_-_143523457 Show fit	0.02	ENSRNOT00000012943 ENSRNOT00000082264	Krt4 Links NCBI RGD Ensembl Show fit	keratin 4
chr9_+_86874685 Show fit	0.01	ENSRNOT00000041337	NEWGENE_1305560 Links NCBI RGD Ensembl Show fit	neuronal tyrosine-phosphorylated phosphoinositide-3-kinase adaptor 2
chr3_+_63536166 Show fit	0.01	ENSRNOT00000016132	Plekha3 Links NCBI RGD Ensembl Show fit	pleckstrin homology domain containing A3
chrX_+_159703578 Show fit	0.01	ENSRNOT00000001162	Cd40lg Links NCBI RGD Ensembl Show fit	CD40 ligand
chr5_+_162808646 Show fit	0.01	ENSRNOT00000021155	Dhrs3 Links NCBI RGD Ensembl Show fit	dehydrogenase/reductase 3
chr20_+_29655226 Show fit	0.01	ENSRNOT00000089059	Spock2 Links NCBI RGD Ensembl Show fit	SPARC/osteonectin, cwcv and kazal like domains proteoglycan 2
chr4_-_81241152 Show fit	0.01	ENSRNOT00000015325 ENSRNOT00000015152	Hnrnpa2b1 Links NCBI RGD Ensembl Show fit	heterogeneous nuclear ribonucleoprotein A2/B1
chr4_+_71512695 Show fit	0.01	ENSRNOT00000037220	Tas2r139 Links NCBI RGD Ensembl Show fit	taste receptor, type 2, member 139
chr3_-_160038078 Show fit	0.01	ENSRNOT00000013445	Serinc3 Links NCBI RGD Ensembl Show fit	serine incorporator 3
chr17_-_45746753 Show fit	0.01	ENSRNOT00000077475	RGD1564243 Links NCBI RGD Ensembl Show fit	similar to brain Zn-finger protein
chr19_+_53055745 Show fit	0.01	ENSRNOT00000074430	Foxl1 Links NCBI RGD Ensembl Show fit	forkhead box L1
chr3_+_51687809 Show fit	0.01	ENSRNOT00000087242	Scn2a Links NCBI RGD Ensembl Show fit	sodium voltage-gated channel alpha subunit 2
chr16_+_50181316 Show fit	0.01	ENSRNOT00000077662	F11 Links NCBI RGD Ensembl Show fit	coagulation factor XI
chr2_-_100249811 Show fit	0.01	ENSRNOT00000086760	Hnf4g Links NCBI RGD Ensembl Show fit	hepatocyte nuclear factor 4, gamma
chr6_-_95890325 Show fit	0.01	ENSRNOT00000050217	LOC690335 Links NCBI RGD Ensembl Show fit	similar to 60S ribosomal protein L23a
chr5_+_103251986 Show fit	0.01	ENSRNOT00000008757	Cntln Links NCBI RGD Ensembl Show fit	centlein
chr4_+_181428664 Show fit	0.00	ENSRNOT00000002518	Rep15 Links NCBI RGD Ensembl Show fit	RAB15 effector protein
chr12_-_7186873 Show fit	0.00	ENSRNOT00000050438	LOC103690996 Links NCBI RGD Ensembl Show fit	uncharacterized LOC103690996
chr1_-_100845392 Show fit	0.00	ENSRNOT00000027436	Tbc1d17 Links NCBI RGD Ensembl Show fit	TBC1 domain family, member 17
chr6_+_135139292 Show fit	0.00	ENSRNOT00000043508	Rpl35al1 Links NCBI RGD Ensembl Show fit	ribosomal protein L35a-like 1
chr13_+_74456487 Show fit	0.00	ENSRNOT00000065801	Angptl1 Links NCBI RGD Ensembl Show fit	angiopoietin-like 1
chr2_+_241909832 Show fit	0.00	ENSRNOT00000047975	Ppp3ca Links NCBI RGD Ensembl Show fit	protein phosphatase 3 catalytic subunit alpha
chr18_+_3887419 Show fit	0.00	ENSRNOT00000093089	Lama3 Links NCBI RGD Ensembl Show fit	laminin subunit alpha 3
chr3_-_63535991 Show fit	0.00	ENSRNOT00000015722	Fkbp7 Links NCBI RGD Ensembl Show fit	FK506 binding protein 7
chr3_+_44806106 Show fit	0.00	ENSRNOT00000035158	Upp2 Links NCBI RGD Ensembl Show fit	uridine phosphorylase 2
chr4_+_14070553 Show fit	0.00	ENSRNOT00000077505	Cd36 Links NCBI RGD Ensembl Show fit	CD36 molecule
chr5_+_164923302 Show fit	0.00	ENSRNOT00000042285	LOC108349682 Links NCBI RGD Ensembl Show fit	60S ribosomal protein L35a
chr18_+_68408890 Show fit	0.00	ENSRNOT00000039702	Ccdc68 Links NCBI RGD Ensembl Show fit	coiled-coil domain containing 68

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Gene overrepresentation in biological process category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.1	0.4	GO:0060066	metanephric part of ureteric bud development(GO:0035502) oviduct development(GO:0060066)
0.0	0.4	GO:0070327	thyroid hormone transport(GO:0070327)
0.0	0.1	GO:0048880	medulla oblongata development(GO:0021550) sensory system development(GO:0048880)
0.0	0.1	GO:0015770	disaccharide transport(GO:0015766) sucrose transport(GO:0015770) oligosaccharide transport(GO:0015772)
0.0	0.1	GO:0090131	mesenchyme migration(GO:0090131)
0.0	0.1	GO:0071386	cellular response to corticosterone stimulus(GO:0071386)
0.0	0.1	GO:0001966	thigmotaxis(GO:0001966)
0.0	0.0	GO:0050828	regulation of liquid surface tension(GO:0050828)

Gene overrepresentation in cellular component category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.1	GO:0030478	actin cap(GO:0030478)
0.0	0.1	GO:0061689	tricellular tight junction(GO:0061689)

Gene overrepresentation in molecular function category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.4	GO:0070324	thyroid hormone binding(GO:0070324)
0.0	0.1	GO:0004809	tRNA (guanine-N2-)-methyltransferase activity(GO:0004809)
0.0	0.1	GO:0008506	sucrose:proton symporter activity(GO:0008506) sucrose transmembrane transporter activity(GO:0008515) disaccharide transmembrane transporter activity(GO:0015154) oligosaccharide transmembrane transporter activity(GO:0015157)
0.0	0.1	GO:0008508	bile acid:sodium symporter activity(GO:0008508)

Gene overrepresentation in curated gene sets: REACTOME pathways category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.1	REACTOME RECYCLING OF BILE ACIDS AND SALTS	Genes involved in Recycling of bile acids and salts
0.0	0.4	REACTOME AMYLOIDS	Genes involved in Amyloids