GSE49485: Hypoxia transcriptome sequencing of rat brain.
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
Klf6 | rn6_v1_chr17_-_67904674_67904674 | 0.86 | 6.4e-02 | Click! |
Patz1 | rn6_v1_chr14_+_83510278_83510278 | 0.74 | 1.5e-01 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr10_-_85684138 Show fit | 1.86 |
ENSRNOT00000017989
|
phosphatidylinositol-5-phosphate 4-kinase type 2 beta |
|
chr1_+_199196059 Show fit | 1.68 |
ENSRNOT00000090428
|
F-box and leucine-rich repeat protein 19 |
|
chr20_+_5535432 Show fit | 1.54 |
ENSRNOT00000040859
|
synaptic Ras GTPase activating protein 1 |
|
chr7_+_130474279 Show fit | 1.39 |
ENSRNOT00000092388
|
SH3 and multiple ankyrin repeat domains 3 |
|
chr7_+_130474508 Show fit | 1.31 |
ENSRNOT00000085191
|
SH3 and multiple ankyrin repeat domains 3 |
|
chr7_+_70364813 Show fit | 1.28 |
ENSRNOT00000084012
ENSRNOT00000031230 |
ArfGAP with GTPase domain, ankyrin repeat and PH domain 2 |
|
chr2_+_198823366 Show fit | 1.27 |
ENSRNOT00000083769
ENSRNOT00000028814 |
protein inhibitor of activated STAT, 3 |
|
chr10_-_61744976 Show fit | 1.19 |
ENSRNOT00000079926
ENSRNOT00000092314 ENSRNOT00000034298 |
small G protein signaling modulator 2 |
|
chr1_+_173607101 Show fit | 1.07 |
ENSRNOT00000074636
|
tubby bipartite transcription factor |
|
chr15_+_3936786 Show fit | 1.07 |
ENSRNOT00000066163
|
calcium/calmodulin-dependent protein kinase II gamma |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.6 | 3.1 | GO:1904717 | regulation of AMPA glutamate receptor clustering(GO:1904717) |
0.2 | 1.9 | GO:2000786 | positive regulation of autophagosome assembly(GO:2000786) |
0.2 | 1.8 | GO:0033601 | positive regulation of mammary gland epithelial cell proliferation(GO:0033601) |
0.1 | 1.8 | GO:0080182 | histone H3-K4 trimethylation(GO:0080182) |
0.1 | 1.4 | GO:0070536 | protein K63-linked deubiquitination(GO:0070536) |
0.1 | 1.3 | GO:0030644 | cellular chloride ion homeostasis(GO:0030644) |
0.1 | 1.3 | GO:0033234 | negative regulation of protein sumoylation(GO:0033234) |
0.1 | 1.3 | GO:1903861 | positive regulation of dendrite extension(GO:1903861) |
0.4 | 1.2 | GO:0034499 | late endosome to Golgi transport(GO:0034499) |
0.2 | 1.1 | GO:0099628 | receptor diffusion trapping(GO:0098953) postsynaptic neurotransmitter receptor diffusion trapping(GO:0098970) neurotransmitter receptor diffusion trapping(GO:0099628) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 2.7 | GO:0005802 | trans-Golgi network(GO:0005802) |
0.0 | 2.6 | GO:0060170 | ciliary membrane(GO:0060170) |
0.1 | 2.5 | GO:0031235 | intrinsic component of the cytoplasmic side of the plasma membrane(GO:0031235) |
0.1 | 2.3 | GO:0032590 | dendrite membrane(GO:0032590) |
0.0 | 1.5 | GO:0043034 | costamere(GO:0043034) |
0.0 | 1.4 | GO:0001650 | fibrillar center(GO:0001650) |
0.1 | 1.3 | GO:0072357 | PTW/PP1 phosphatase complex(GO:0072357) |
0.0 | 1.2 | GO:0002102 | podosome(GO:0002102) |
0.0 | 1.1 | GO:0000159 | protein phosphatase type 2A complex(GO:0000159) |
0.0 | 1.1 | GO:0019005 | SCF ubiquitin ligase complex(GO:0019005) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.6 | 4.1 | GO:0030160 | GKAP/Homer scaffold activity(GO:0030160) |
0.0 | 3.7 | GO:0017124 | SH3 domain binding(GO:0017124) |
0.0 | 3.6 | GO:0005096 | GTPase activator activity(GO:0005096) |
0.6 | 1.9 | GO:0016309 | 1-phosphatidylinositol-5-phosphate 4-kinase activity(GO:0016309) |
0.1 | 1.8 | GO:0042800 | histone methyltransferase activity (H3-K4 specific)(GO:0042800) |
0.0 | 1.6 | GO:0005544 | calcium-dependent phospholipid binding(GO:0005544) |
0.1 | 1.5 | GO:0032794 | GTPase activating protein binding(GO:0032794) |
0.0 | 1.3 | GO:0004683 | calmodulin-dependent protein kinase activity(GO:0004683) |
0.0 | 1.3 | GO:0004702 | receptor signaling protein serine/threonine kinase activity(GO:0004702) |
0.1 | 1.2 | GO:0022820 | potassium:chloride symporter activity(GO:0015379) potassium ion symporter activity(GO:0022820) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 3.7 | PID RET PATHWAY | Signaling events regulated by Ret tyrosine kinase |
0.1 | 2.5 | PID RAS PATHWAY | Regulation of Ras family activation |
0.1 | 2.0 | ST WNT CA2 CYCLIC GMP PATHWAY | Wnt/Ca2+/cyclic GMP signaling. |
0.0 | 1.7 | PID TGFBR PATHWAY | TGF-beta receptor signaling |
0.1 | 1.6 | PID NETRIN PATHWAY | Netrin-mediated signaling events |
0.0 | 1.5 | PID TNF PATHWAY | TNF receptor signaling pathway |
0.0 | 1.5 | PID RHOA REG PATHWAY | Regulation of RhoA activity |
0.1 | 1.3 | ST JAK STAT PATHWAY | Jak-STAT Pathway |
0.1 | 1.1 | SA B CELL RECEPTOR COMPLEXES | Antigen binding to B cell receptors activates protein tyrosine kinases, such as the Src family, which ultimate activate MAP kinases. |
0.0 | 1.0 | ST MYOCYTE AD PATHWAY | Myocyte Adrenergic Pathway is a specific case of the generalized Adrenergic Pathway. |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 3.1 | REACTOME SYNTHESIS OF PIPS AT THE PLASMA MEMBRANE | Genes involved in Synthesis of PIPs at the plasma membrane |
0.1 | 2.0 | REACTOME POST NMDA RECEPTOR ACTIVATION EVENTS | Genes involved in Post NMDA receptor activation events |
0.1 | 1.6 | REACTOME PRE NOTCH TRANSCRIPTION AND TRANSLATION | Genes involved in Pre-NOTCH Transcription and Translation |
0.0 | 1.3 | REACTOME MYOGENESIS | Genes involved in Myogenesis |
0.1 | 1.2 | REACTOME SIGNALING BY HIPPO | Genes involved in Signaling by Hippo |
0.0 | 1.2 | REACTOME SIGNALING BY ROBO RECEPTOR | Genes involved in Signaling by Robo receptor |
0.0 | 1.2 | REACTOME NRAGE SIGNALS DEATH THROUGH JNK | Genes involved in NRAGE signals death through JNK |
0.1 | 1.1 | REACTOME NOREPINEPHRINE NEUROTRANSMITTER RELEASE CYCLE | Genes involved in Norepinephrine Neurotransmitter Release Cycle |
0.1 | 1.1 | REACTOME ACTIVATION OF THE AP1 FAMILY OF TRANSCRIPTION FACTORS | Genes involved in Activation of the AP-1 family of transcription factors |
0.0 | 1.1 | REACTOME TRAFFICKING OF AMPA RECEPTORS | Genes involved in Trafficking of AMPA receptors |