GSE49485: Hypoxia transcriptome sequencing of rat brain.

• Motif significance table
• Sample table
• Mean activities
• All promoters sorted by FOV

• Activity table
• Activity delta table
• Regulatory interactions
• Motifs sorted by significance
• Expression table
• Download the whole report

Gene Symbol	Gene ID	Gene Info
Creb3l2 Links NCBI RGD Ensembl	ENSRNOG00000012826	cAMP responsive element binding protein 3-like 2

Gene	Promoter	Pearson corr. coef.	P-value	Plot
Creb3l2	rn6_v1_chr4_-_64981384_64981384	-0.49	4.0e-01	Click!

Promoter	Log-likelihood	Transcript	Gene	Gene Info
chrX_+_15098904 Show fit	0.08	ENSRNOT00000007367 ENSRNOT00000087033	Rbm3 Links NCBI RGD Ensembl Show fit	RNA binding motif (RNP1, RRM) protein 3
chr7_+_141249044 Show fit	0.06	ENSRNOT00000084911	Aqp5 Links NCBI RGD Ensembl Show fit	aquaporin 5
chr11_-_70499200 Show fit	0.05	ENSRNOT00000002439	Slc12a8 Links NCBI RGD Ensembl Show fit	solute carrier family 12, member 8
chr7_+_3332788 Show fit	0.05	ENSRNOT00000010180	Cd63 Links NCBI RGD Ensembl Show fit	Cd63 molecule
chr3_-_10375826 Show fit	0.05	ENSRNOT00000093365	Ass1 Links NCBI RGD Ensembl Show fit	argininosuccinate synthase 1
chr7_+_69213147 Show fit	0.04	ENSRNOT00000032786	Lrig3 Links NCBI RGD Ensembl Show fit	leucine-rich repeats and immunoglobulin-like domains 3
chr10_-_16752205 Show fit	0.04	ENSRNOT00000079462	Crebrf Links NCBI RGD Ensembl Show fit	CREB3 regulatory factor
chr3_+_55094637 Show fit	0.04	ENSRNOT00000058763	Cers6 Links NCBI RGD Ensembl Show fit	ceramide synthase 6
chr5_-_166726794 Show fit	0.04	ENSRNOT00000022799	Slc25a33 Links NCBI RGD Ensembl Show fit	solute carrier family 25 member 33
chr7_+_53878610 Show fit	0.04	ENSRNOT00000091910	Osbpl8 Links NCBI RGD Ensembl Show fit	oxysterol binding protein-like 8
chr5_-_126221916 Show fit	0.04	ENSRNOT00000052130	Lexm Links NCBI RGD Ensembl Show fit	lymphocyte expansion molecule
chr5_-_152458023 Show fit	0.04	ENSRNOT00000031225	Cnksr1 Links NCBI RGD Ensembl Show fit	connector enhancer of kinase suppressor of Ras 1
chr7_-_124198200 Show fit	0.04	ENSRNOT00000078947	Arfgap3 Links NCBI RGD Ensembl Show fit	ADP-ribosylation factor GTPase activating protein 3
chr1_+_15620653 Show fit	0.03	ENSRNOT00000017401	Map7 Links NCBI RGD Ensembl Show fit	microtubule-associated protein 7
chr19_-_37210412 Show fit	0.03	ENSRNOT00000083097	B3gnt9 Links NCBI RGD Ensembl Show fit	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 9
chrX_-_10413984 Show fit	0.03	ENSRNOT00000039551 ENSRNOT00000091448	Ddx3x Links NCBI RGD Ensembl Show fit	DEAD-box helicase 3, X-linked
chr7_-_24667301 Show fit	0.03	ENSRNOT00000009154	Tmem263 Links NCBI RGD Ensembl Show fit	transmembrane protein 263
chr4_-_34779776 Show fit	0.03	ENSRNOT00000077329	Ica1 Links NCBI RGD Ensembl Show fit	islet cell autoantigen 1
chr17_+_85356042 Show fit	0.03	ENSRNOT00000022201	Commd3 Links NCBI RGD Ensembl Show fit	COMM domain containing 3
chr5_+_135574172 Show fit	0.03	ENSRNOT00000023416	Tesk2 Links NCBI RGD Ensembl Show fit	testis-specific kinase 2
chr9_+_94425252 Show fit	0.03	ENSRNOT00000064965 ENSRNOT00000076099	Gigyf2 Links NCBI RGD Ensembl Show fit	GRB10 interacting GYF protein 2
chr10_-_37209881 Show fit	0.03	ENSRNOT00000090475	Sec24a Links NCBI RGD Ensembl Show fit	SEC24 homolog A, COPII coat complex component
chr11_-_83867203 Show fit	0.03	ENSRNOT00000002394	Chrd Links NCBI RGD Ensembl Show fit	chordin
chr8_-_58253688 Show fit	0.03	ENSRNOT00000010956	Cul5 Links NCBI RGD Ensembl Show fit	cullin 5
chr1_-_229639187 Show fit	0.03	ENSRNOT00000016804	Zfp91 Links NCBI RGD Ensembl Show fit	zinc finger protein 91
chr18_-_33414236 Show fit	0.03	ENSRNOT00000020385	Yipf5 Links NCBI RGD Ensembl Show fit	Yip1 domain family, member 5
chr3_-_66417741 Show fit	0.03	ENSRNOT00000007662	Neurod1 Links NCBI RGD Ensembl Show fit	neuronal differentiation 1
chr4_-_34780193 Show fit	0.02	ENSRNOT00000011651	Ica1 Links NCBI RGD Ensembl Show fit	islet cell autoantigen 1
chr20_+_6288267 Show fit	0.02	ENSRNOT00000000627	Srsf3 Links NCBI RGD Ensembl Show fit	serine and arginine rich splicing factor 3
chr6_+_42852683 Show fit	0.02	ENSRNOT00000079185	Odc1 Links NCBI RGD Ensembl Show fit	ornithine decarboxylase 1
chr3_+_114176309 Show fit	0.02	ENSRNOT00000023350	Sord Links NCBI RGD Ensembl Show fit	sorbitol dehydrogenase
chr9_+_69953440 Show fit	0.02	ENSRNOT00000034740	Eef1b2 Links NCBI RGD Ensembl Show fit	eukaryotic translation elongation factor 1 beta 2
chr6_+_108167716 Show fit	0.02	ENSRNOT00000064426	Lin52 Links NCBI RGD Ensembl Show fit	lin-52 DREAM MuvB core complex component
chr20_-_33521118 Show fit	0.02	ENSRNOT00000083295	AABR07045071.1 Links NCBI RGD Ensembl Show fit
chr3_-_81282157 Show fit	0.02	ENSRNOT00000051258	Large2 Links NCBI RGD Ensembl Show fit	LARGE xylosyl- and glucuronyltransferase 2
chr14_+_104475082 Show fit	0.02	ENSRNOT00000084481	Rab1a Links NCBI RGD Ensembl Show fit	RAB1A, member RAS oncogene family
chr1_+_162676269 Show fit	0.02	ENSRNOT00000017702	Clns1a Links NCBI RGD Ensembl Show fit	chloride nucleotide-sensitive channel 1A
chr4_+_113935492 Show fit	0.02	ENSRNOT00000035329	LOC103692170 Links NCBI RGD Ensembl Show fit	coiled-coil domain-containing protein 142
chr5_-_138470096 Show fit	0.02	ENSRNOT00000011392	Ppcs Links NCBI RGD Ensembl Show fit	phosphopantothenoylcysteine synthetase
chr17_+_9837402 Show fit	0.02	ENSRNOT00000076436	Rab24 Links NCBI RGD Ensembl Show fit	RAB24, member RAS oncogene family
chr1_+_266333440 Show fit	0.02	ENSRNOT00000071243	Sfxn2 Links NCBI RGD Ensembl Show fit	sideroflexin 2
chr17_-_21591203 Show fit	0.02	ENSRNOT00000036195	Pak1ip1 Links NCBI RGD Ensembl Show fit	PAK1 interacting protein 1
chr4_-_87257667 Show fit	0.02	ENSRNOT00000083491	Nt5c3a Links NCBI RGD Ensembl Show fit	5'-nucleotidase, cytosolic IIIA
chr9_+_99998275 Show fit	0.02	ENSRNOT00000074395	Gpc1 Links NCBI RGD Ensembl Show fit	glypican 1
chr2_-_204032023 Show fit	0.02	ENSRNOT00000040430	Atp1a1 Links NCBI RGD Ensembl Show fit	ATPase Na+/K+ transporting subunit alpha 1
chr1_+_215701544 Show fit	0.02	ENSRNOT00000027585	Mrpl23 Links NCBI RGD Ensembl Show fit	mitochondrial ribosomal protein L23
chr5_+_154668179 Show fit	0.02	ENSRNOT00000015971	Hnrnpr Links NCBI RGD Ensembl Show fit	heterogeneous nuclear ribonucleoprotein R
chr10_+_70134729 Show fit	0.02	ENSRNOT00000076739	Lig3 Links NCBI RGD Ensembl Show fit	DNA ligase 3
chr4_-_58006839 Show fit	0.02	ENSRNOT00000076645	Cep41 Links NCBI RGD Ensembl Show fit	centrosomal protein 41
chr15_-_60766579 Show fit	0.02	ENSRNOT00000079978	Akap11 Links NCBI RGD Ensembl Show fit	A-kinase anchoring protein 11
chr5_+_60250546 Show fit	0.02	ENSRNOT00000017707	Zcchc7 Links NCBI RGD Ensembl Show fit	zinc finger CCHC-type containing 7
chr4_+_98648545 Show fit	0.01	ENSRNOT00000008451	Eif2ak3 Links NCBI RGD Ensembl Show fit	eukaryotic translation initiation factor 2 alpha kinase 3
chr12_+_16912249 Show fit	0.01	ENSRNOT00000085936	Tmem184a Links NCBI RGD Ensembl Show fit	transmembrane protein 184A
chr2_-_53827175 Show fit	0.01	ENSRNOT00000078158	RGD1305938 Links NCBI RGD Ensembl Show fit	similar to expressed sequence AW549877
chr2_+_189400696 Show fit	0.01	ENSRNOT00000046919 ENSRNOT00000089801	LOC361985 Links NCBI RGD Ensembl Show fit	similar to NICE-3
chr3_+_122803772 Show fit	0.01	ENSRNOT00000009564	Nop56 Links NCBI RGD Ensembl Show fit	NOP56 ribonucleoprotein
chr10_+_34938667 Show fit	0.01	ENSRNOT00000086443 ENSRNOT00000059104	LOC103690164 Links NCBI RGD Ensembl Show fit	5-phosphohydroxy-L-lysine phospho-lyase
chr2_-_211017778 Show fit	0.01	ENSRNOT00000026883	Sypl2 Links NCBI RGD Ensembl Show fit	synaptophysin-like 2
chr1_-_141893674 Show fit	0.01	ENSRNOT00000019059 ENSRNOT00000085988	Idh2 Links NCBI RGD Ensembl Show fit	isocitrate dehydrogenase (NADP(+)) 2, mitochondrial
chr18_-_15637715 Show fit	0.01	ENSRNOT00000022270	Dsg2 Links NCBI RGD Ensembl Show fit	desmoglein 2
chr1_-_222098297 Show fit	0.01	ENSRNOT00000028678	Rps6ka4 Links NCBI RGD Ensembl Show fit	ribosomal protein S6 kinase A4
chr19_-_49448072 Show fit	0.01	ENSRNOT00000014997	Cmc2 Links NCBI RGD Ensembl Show fit	C-x(9)-C motif containing 2
chr3_-_119405300 Show fit	0.01	ENSRNOT00000015568	Sppl2a Links NCBI RGD Ensembl Show fit	signal peptide peptidase-like 2A
chr2_+_44512895 Show fit	0.01	ENSRNOT00000013218	Slc38a9 Links NCBI RGD Ensembl Show fit	solute carrier family 38, member 9
chr12_+_24473981 Show fit	0.01	ENSRNOT00000001973	Fzd9 Links NCBI RGD Ensembl Show fit	frizzled class receptor 9
chr5_+_138470069 Show fit	0.01	ENSRNOT00000076343 ENSRNOT00000064073	Zmynd12 Links NCBI RGD Ensembl Show fit	zinc finger, MYND-type containing 12
chr1_+_170471238 Show fit	0.01	ENSRNOT00000076961 ENSRNOT00000075597 ENSRNOT00000076631 ENSRNOT00000076783	Timm10b Links NCBI RGD Ensembl Show fit Dnhd1 Links NCBI RGD Ensembl Show fit	translocase of inner mitochondrial membrane 10B dynein heavy chain domain 1
chr15_-_34322115 Show fit	0.01	ENSRNOT00000026734	Tm9sf1 Links NCBI RGD Ensembl Show fit	transmembrane 9 superfamily member 1
chr10_+_36099263 Show fit	0.01	ENSRNOT00000083568	Adamts2 Links NCBI RGD Ensembl Show fit	ADAM metallopeptidase with thrombospondin type 1 motif, 2
chr10_-_88667345 Show fit	0.01	ENSRNOT00000025518	Kcnh4 Links NCBI RGD Ensembl Show fit	potassium voltage-gated channel subfamily H member 4
chr10_+_56610051 Show fit	0.01	ENSRNOT00000024348	Dvl2 Links NCBI RGD Ensembl Show fit	dishevelled segment polarity protein 2
chr3_+_85544827 Show fit	0.01	ENSRNOT00000051901	AABR07052953.1 Links NCBI RGD Ensembl Show fit
chr19_+_10827371 Show fit	0.01	ENSRNOT00000024120	Fam192a Links NCBI RGD Ensembl Show fit	family with sequence similarity 192, member A
chrX_-_154722220 Show fit	0.01	ENSRNOT00000089743 ENSRNOT00000087893	Fmr1 Links NCBI RGD Ensembl Show fit	fragile X mental retardation 1
chr19_-_57422093 Show fit	0.01	ENSRNOT00000025512	RGD1559896 Links NCBI RGD Ensembl Show fit	similar to RIKEN cDNA 2310022B05
chr13_+_105408179 Show fit	0.01	ENSRNOT00000003378	Ddx3y Links NCBI RGD Ensembl Show fit	DEAD (Asp-Glu-Ala-Asp) box helicase 3, Y-linked
chrX_+_16050780 Show fit	0.01	ENSRNOT00000079054	Clcn5 Links NCBI RGD Ensembl Show fit	chloride voltage-gated channel 5
chr6_+_26797126 Show fit	0.01	ENSRNOT00000010586	Cgref1 Links NCBI RGD Ensembl Show fit	cell growth regulator with EF hand domain 1
chr19_-_38120578 Show fit	0.01	ENSRNOT00000026873	Esrp2 Links NCBI RGD Ensembl Show fit	epithelial splicing regulatory protein 2
chr7_+_72924799 Show fit	0.01	ENSRNOT00000008969	Laptm4b Links NCBI RGD Ensembl Show fit	lysosomal protein transmembrane 4 beta
chr7_-_73270308 Show fit	0.01	ENSRNOT00000007430	Rida Links NCBI RGD Ensembl Show fit	reactive intermediate imine deaminase A homolog
chr6_-_137733026 Show fit	0.01	ENSRNOT00000019213	Jag2 Links NCBI RGD Ensembl Show fit	jagged 2
chr2_+_250600823 Show fit	0.01	ENSRNOT00000083750	Sep15 Links NCBI RGD Ensembl Show fit	selenoprotein 15
chr3_-_119405453 Show fit	0.01	ENSRNOT00000090355	Sppl2a Links NCBI RGD Ensembl Show fit	signal peptide peptidase-like 2A
chrX_+_138046494 Show fit	0.01	ENSRNOT00000010596	Stk26 Links NCBI RGD Ensembl Show fit	serine/threonine kinase 26
chr11_-_16889201 Show fit	0.01	ENSRNOT00000002121	Btg3 Links NCBI RGD Ensembl Show fit	BTG anti-proliferation factor 3
chr7_-_143738237 Show fit	0.01	ENSRNOT00000055320	Spryd3 Links NCBI RGD Ensembl Show fit	SPRY domain containing 3
chr20_-_10386663 Show fit	0.01	ENSRNOT00000045275 ENSRNOT00000042432	Cbs Links NCBI RGD Ensembl Show fit	cystathionine beta synthase
chr19_-_43215281 Show fit	0.01	ENSRNOT00000025052	Aars Links NCBI RGD Ensembl Show fit	alanyl-tRNA synthetase
chr2_+_209097927 Show fit	0.01	ENSRNOT00000023807	Dennd2d Links NCBI RGD Ensembl Show fit	DENN domain containing 2D
chr3_-_95418679 Show fit	0.01	ENSRNOT00000018074	Rcn1 Links NCBI RGD Ensembl Show fit	reticulocalbin 1
chr5_-_173081839 Show fit	0.00	ENSRNOT00000066880	Mmp23 Links NCBI RGD Ensembl Show fit	matrix metallopeptidase 23
chr1_+_48176106 Show fit	0.00	ENSRNOT00000021840	Igf2r Links NCBI RGD Ensembl Show fit	insulin-like growth factor 2 receptor
chr10_-_104564480 Show fit	0.00	ENSRNOT00000008525	Galk1 Links NCBI RGD Ensembl Show fit	galactokinase 1
chr20_+_22728208 Show fit	0.00	ENSRNOT00000000794	LOC100363472 Links NCBI RGD Ensembl Show fit	nuclear receptor-binding factor 2-like
chr15_+_45422010 Show fit	0.00	ENSRNOT00000012231	Rnaseh2b Links NCBI RGD Ensembl Show fit	ribonuclease H2, subunit B
chr1_+_154377447 Show fit	0.00	ENSRNOT00000084268 ENSRNOT00000092086 ENSRNOT00000091470 ENSRNOT00000025415	Picalm Links NCBI RGD Ensembl Show fit	phosphatidylinositol binding clathrin assembly protein
chr16_-_21348391 Show fit	0.00	ENSRNOT00000083537	Lpar2 Links NCBI RGD Ensembl Show fit	lysophosphatidic acid receptor 2
chr4_-_49439867 Show fit	0.00	ENSRNOT00000090583	Fam3c Links NCBI RGD Ensembl Show fit	family with sequence similarity 3, member C
chr8_-_98738446 Show fit	0.00	ENSRNOT00000019860	Zic1 Links NCBI RGD Ensembl Show fit	Zic family member 1
chr3_-_175709465 Show fit	0.00	ENSRNOT00000089971	Gata5 Links NCBI RGD Ensembl Show fit	GATA binding protein 5
chrX_+_68627313 Show fit	0.00	ENSRNOT00000076699 ENSRNOT00000076795 ENSRNOT00000008705	Yipf6 Links NCBI RGD Ensembl Show fit	Yip1 domain family, member 6
chr19_-_43215077 Show fit	0.00	ENSRNOT00000082151	Aars Links NCBI RGD Ensembl Show fit	alanyl-tRNA synthetase
chr2_+_189106039 Show fit	0.00	ENSRNOT00000028210	Ube2q1 Links NCBI RGD Ensembl Show fit	ubiquitin conjugating enzyme E2 Q1
chr9_-_61690956 Show fit	0.00	ENSRNOT00000066589	Hspd1 Links NCBI RGD Ensembl Show fit	heat shock protein family D member 1
chr10_+_82375572 Show fit	0.00	ENSRNOT00000004947	Mrpl27 Links NCBI RGD Ensembl Show fit	mitochondrial ribosomal protein L27
chr4_+_119815139 Show fit	0.00	ENSRNOT00000083402 ENSRNOT00000016137	Hmces Links NCBI RGD Ensembl Show fit	5-hydroxymethylcytosine (hmC) binding, ES cell-specific
chr14_+_35683442 Show fit	0.00	ENSRNOT00000003085	Chic2 Links NCBI RGD Ensembl Show fit	cysteine-rich hydrophobic domain 2
chr1_-_82120902 Show fit	0.00	ENSRNOT00000027684	Erf Links NCBI RGD Ensembl Show fit	Ets2 repressor factor
chr10_+_88326080 Show fit	0.00	ENSRNOT00000076475	Fkbp10 Links NCBI RGD Ensembl Show fit	FK506 binding protein 10
chr15_+_38096994 Show fit	0.00	ENSRNOT00000064635	Mrpl57 Links NCBI RGD Ensembl Show fit	mitochondrial ribosomal protein L57
chr20_-_30888735 Show fit	0.00	ENSRNOT00000090004 ENSRNOT00000063875	Adamts14 Links NCBI RGD Ensembl Show fit	ADAM metallopeptidase with thrombospondin type 1 motif, 14
chr6_-_55524436 Show fit	0.00	ENSRNOT00000006752	Tspan13 Links NCBI RGD Ensembl Show fit	tetraspanin 13

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Gene overrepresentation in biological process category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.0	GO:0000053	argininosuccinate metabolic process(GO:0000053)
0.0	0.0	GO:0032474	otolith morphogenesis(GO:0032474)
0.0	0.0	GO:1902211	regulation of prolactin signaling pathway(GO:1902211)

Gene overrepresentation in cellular component category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.0	GO:0097487	multivesicular body, internal vesicle(GO:0097487)