GSE49485: Hypoxia transcriptome sequencing of rat brain.

• Motif significance table
• Sample table
• Mean activities
• All promoters sorted by FOV

• Activity table
• Activity delta table
• Regulatory interactions
• Motifs sorted by significance
• Expression table
• Download the whole report

Gene Symbol	Gene ID	Gene Info
Nkx6-2 Links NCBI RGD Ensembl	ENSRNOG00000017748	NK6 homeobox 2

Gene	Promoter	Pearson corr. coef.	P-value	Plot
Nkx6-2	rn6_v1_chr1_-_211923929_211923929	-0.69	2.0e-01	Click!

Promoter	Log-likelihood	Transcript	Gene	Gene Info
chr19_-_21970103 Show fit	0.08	ENSRNOT00000074210	AABR07043115.1 Links NCBI RGD Ensembl Show fit
chr14_+_104250617 Show fit	0.07	ENSRNOT00000079874	Spred2 Links NCBI RGD Ensembl Show fit	sprouty-related, EVH1 domain containing 2
chr19_+_27603307 Show fit	0.07	ENSRNOT00000074702	AABR07043347.1 Links NCBI RGD Ensembl Show fit
chr10_-_104482838 Show fit	0.06	ENSRNOT00000007246	Recql5 Links NCBI RGD Ensembl Show fit	RecQ like helicase 5
chr3_+_113918629 Show fit	0.06	ENSRNOT00000078978 ENSRNOT00000037168	Ctdspl2 Links NCBI RGD Ensembl Show fit	CTD small phosphatase like 2
chr6_-_76552559 Show fit	0.05	ENSRNOT00000065230	Ralgapa1 Links NCBI RGD Ensembl Show fit	Ral GTPase activating protein catalytic alpha subunit 1
chr15_+_87722221 Show fit	0.05	ENSRNOT00000082688	Scel Links NCBI RGD Ensembl Show fit	sciellin
chr18_+_1723565 Show fit	0.05	ENSRNOT00000033468	Greb1l Links NCBI RGD Ensembl Show fit	growth regulation by estrogen in breast cancer 1 like
chr10_+_65552897 Show fit	0.04	ENSRNOT00000056217	Spag5 Links NCBI RGD Ensembl Show fit	sperm associated antigen 5
chr5_+_173447784 Show fit	0.04	ENSRNOT00000027251	Tnfrsf4 Links NCBI RGD Ensembl Show fit	TNF receptor superfamily member 4
chr8_+_23398030 Show fit	0.04	ENSRNOT00000031893	RGD1561444 Links NCBI RGD Ensembl Show fit	similar to RIKEN cDNA 9530077C05
chr7_-_122644054 Show fit	0.04	ENSRNOT00000025941	Dnajb7 Links NCBI RGD Ensembl Show fit	DnaJ heat shock protein family (Hsp40) member B7
chr2_+_210045161 Show fit	0.04	ENSRNOT00000024455	Slc16a4 Links NCBI RGD Ensembl Show fit	solute carrier family 16, member 4
chr11_-_62451149 Show fit	0.04	ENSRNOT00000093686 ENSRNOT00000081443	Zbtb20 Links NCBI RGD Ensembl Show fit	zinc finger and BTB domain containing 20
chr1_-_64147251 Show fit	0.04	ENSRNOT00000088502	Cnot3 Links NCBI RGD Ensembl Show fit	CCR4-NOT transcription complex, subunit 3
chr2_-_96509424 Show fit	0.03	ENSRNOT00000090866	Zc2hc1a Links NCBI RGD Ensembl Show fit	zinc finger, C2HC-type containing 1A
chr18_+_30904498 Show fit	0.03	ENSRNOT00000026969	Pcdhga11 Links NCBI RGD Ensembl Show fit	protocadherin gamma subfamily A, 11
chr2_-_188559882 Show fit	0.03	ENSRNOT00000088199	Trim46 Links NCBI RGD Ensembl Show fit	tripartite motif-containing 46
chr6_+_86872903 Show fit	0.03	ENSRNOT00000086894	Fancm Links NCBI RGD Ensembl Show fit	Fanconi anemia, complementation group M
chr9_+_73378057 Show fit	0.03	ENSRNOT00000043627 ENSRNOT00000045766 ENSRNOT00000092445 ENSRNOT00000037974	Map2 Links NCBI RGD Ensembl Show fit	microtubule-associated protein 2
chr3_+_112390106 Show fit	0.03	ENSRNOT00000081197	LOC691918 Links NCBI RGD Ensembl Show fit	similar to Centrosomal protein of 27 kDa (Cep27 protein)
chr13_-_111972603 Show fit	0.03	ENSRNOT00000007870	Hsd11b1 Links NCBI RGD Ensembl Show fit	hydroxysteroid 11-beta dehydrogenase 1
chr8_+_115546893 Show fit	0.03	ENSRNOT00000018932	Dcaf1 Links NCBI RGD Ensembl Show fit	DDB1 and CUL4 associated factor 1
chr3_-_7796385 Show fit	0.03	ENSRNOT00000082489	Ntng2 Links NCBI RGD Ensembl Show fit	netrin G2
chr16_-_10802512 Show fit	0.03	ENSRNOT00000079554	Bmpr1a Links NCBI RGD Ensembl Show fit	bone morphogenetic protein receptor type 1A
chr4_-_150522351 Show fit	0.02	ENSRNOT00000079053	Zfp9 Links NCBI RGD Ensembl Show fit	zinc finger protein 9
chr2_+_198726118 Show fit	0.02	ENSRNOT00000056237	Lix1l Links NCBI RGD Ensembl Show fit	limb and CNS expressed 1 like
chr3_+_48082935 Show fit	0.02	ENSRNOT00000087711 ENSRNOT00000067545	Slc4a10 Links NCBI RGD Ensembl Show fit	solute carrier family 4 member 10
chr3_+_56030915 Show fit	0.02	ENSRNOT00000010489	Phospho2 Links NCBI RGD Ensembl Show fit	phosphatase, orphan 2
chr4_+_88694583 Show fit	0.02	ENSRNOT00000009202	Ppm1k Links NCBI RGD Ensembl Show fit	protein phosphatase, Mg2+/Mn2+ dependent, 1K
chr7_-_11223649 Show fit	0.02	ENSRNOT00000061191	Mfsd12 Links NCBI RGD Ensembl Show fit	major facilitator superfamily domain containing 12
chr13_-_52413681 Show fit	0.02	ENSRNOT00000037100 ENSRNOT00000011801	Nav1 Links NCBI RGD Ensembl Show fit	neuron navigator 1
chr18_+_29124428 Show fit	0.02	ENSRNOT00000073131	Igip Links NCBI RGD Ensembl Show fit	IgA-inducing protein
chr10_-_43599232 Show fit	0.02	ENSRNOT00000044299	Gemin5 Links NCBI RGD Ensembl Show fit	gem (nuclear organelle) associated protein 5
chr17_+_35435079 Show fit	0.02	ENSRNOT00000074800	Exoc2 Links NCBI RGD Ensembl Show fit	exocyst complex component 2
chr14_+_63095720 Show fit	0.02	ENSRNOT00000006071	Ppargc1a Links NCBI RGD Ensembl Show fit	PPARG coactivator 1 alpha
chr13_-_104284068 Show fit	0.02	ENSRNOT00000005407	LOC100912365 Links NCBI RGD Ensembl Show fit	uncharacterized LOC100912365
chr7_-_68512397 Show fit	0.02	ENSRNOT00000058036	Slc16a7 Links NCBI RGD Ensembl Show fit	solute carrier family 16 member 7
chr13_-_47916185 Show fit	0.02	ENSRNOT00000087793	Dyrk3 Links NCBI RGD Ensembl Show fit	dual specificity tyrosine phosphorylation regulated kinase 3
chr17_-_53915076 Show fit	0.02	ENSRNOT00000010836	Arid4b Links NCBI RGD Ensembl Show fit	AT-rich interaction domain 4B
chr3_-_48831417 Show fit	0.02	ENSRNOT00000009920 ENSRNOT00000085246	Kcnh7 Links NCBI RGD Ensembl Show fit	potassium voltage-gated channel subfamily H member 7
chr6_-_98606109 Show fit	0.02	ENSRNOT00000006860	Wdr89 Links NCBI RGD Ensembl Show fit	WD repeat domain 89
chr5_+_4373626 Show fit	0.02	ENSRNOT00000064946	Eya1 Links NCBI RGD Ensembl Show fit	EYA transcriptional coactivator and phosphatase 1
chr9_+_1313209 Show fit	0.02	ENSRNOT00000083387	Tbc1d5 Links NCBI RGD Ensembl Show fit	TBC1 domain family, member 5
chr17_+_9596957 Show fit	0.02	ENSRNOT00000017349	Fam193b Links NCBI RGD Ensembl Show fit	family with sequence similarity 193, member B
chr4_-_135069970 Show fit	0.02	ENSRNOT00000008221	Cntn3 Links NCBI RGD Ensembl Show fit	contactin 3
chr5_-_166116516 Show fit	0.02	ENSRNOT00000079919 ENSRNOT00000080888	Kif1b Links NCBI RGD Ensembl Show fit	kinesin family member 1B
chr8_+_85503224 Show fit	0.02	ENSRNOT00000012348	Gsta4 Links NCBI RGD Ensembl Show fit	glutathione S-transferase alpha 4
chr17_+_34704616 Show fit	0.02	ENSRNOT00000090706 ENSRNOT00000083674 ENSRNOT00000077110	Exoc2 Links NCBI RGD Ensembl Show fit	exocyst complex component 2
chr18_-_77535564 Show fit	0.02	ENSRNOT00000041380 ENSRNOT00000090265	Atp9b Links NCBI RGD Ensembl Show fit	ATPase phospholipid transporting 9B (putative)
chr16_+_46731403 Show fit	0.02	ENSRNOT00000017624	Tenm3 Links NCBI RGD Ensembl Show fit	teneurin transmembrane protein 3
chr6_+_129621070 Show fit	0.02	ENSRNOT00000091338	Papola Links NCBI RGD Ensembl Show fit	poly (A) polymerase alpha
chr9_+_53546018 Show fit	0.01	ENSRNOT00000016842	Inpp1 Links NCBI RGD Ensembl Show fit	inositol polyphosphate-1-phosphatase
chr4_-_51931112 Show fit	0.01	ENSRNOT00000080575	Pot1 Links NCBI RGD Ensembl Show fit	protection of telomeres 1
chr18_-_26211445 Show fit	0.01	ENSRNOT00000027739	Nrep Links NCBI RGD Ensembl Show fit	neuronal regeneration related protein
chr15_+_56666012 Show fit	0.01	ENSRNOT00000013408	Htr2a Links NCBI RGD Ensembl Show fit	5-hydroxytryptamine receptor 2A
chr3_-_56030744 Show fit	0.01	ENSRNOT00000089637	Ccdc173 Links NCBI RGD Ensembl Show fit	coiled-coil domain containing 173
chrX_+_22342308 Show fit	0.01	ENSRNOT00000079909 ENSRNOT00000087945 ENSRNOT00000077528	Kdm5c Links NCBI RGD Ensembl Show fit	lysine demethylase 5C
chr7_+_64769089 Show fit	0.01	ENSRNOT00000088861	Grip1 Links NCBI RGD Ensembl Show fit	glutamate receptor interacting protein 1
chr4_+_162281574 Show fit	0.01	ENSRNOT00000087850	Clec2d Links NCBI RGD Ensembl Show fit	C-type lectin domain family 2, member D
chr18_+_30496318 Show fit	0.01	ENSRNOT00000027179	Pcdhb11 Links NCBI RGD Ensembl Show fit	protocadherin beta 11
chr3_+_8430829 Show fit	0.01	ENSRNOT00000090440 ENSRNOT00000060969	Cercam Links NCBI RGD Ensembl Show fit	cerebral endothelial cell adhesion molecule
chrX_-_25590048 Show fit	0.01	ENSRNOT00000004873	Mid1 Links NCBI RGD Ensembl Show fit	midline 1
chr14_+_34455934 Show fit	0.01	ENSRNOT00000085991 ENSRNOT00000002981	Clock Links NCBI RGD Ensembl Show fit	clock circadian regulator
chr1_+_100577056 Show fit	0.01	ENSRNOT00000026992	Napsa Links NCBI RGD Ensembl Show fit	napsin A aspartic peptidase
chr16_-_10661528 Show fit	0.01	ENSRNOT00000085012	Fam35a Links NCBI RGD Ensembl Show fit	family with sequence similarity 35, member A
chr14_-_72025137 Show fit	0.01	ENSRNOT00000080604	C1qtnf7 Links NCBI RGD Ensembl Show fit	C1q and tumor necrosis factor related protein 7
chr13_+_80464348 Show fit	0.01	ENSRNOT00000076324	Vamp4 Links NCBI RGD Ensembl Show fit	vesicle-associated membrane protein 4
chr8_-_109621408 Show fit	0.01	ENSRNOT00000087398	Ppp2r3a Links NCBI RGD Ensembl Show fit	protein phosphatase 2, regulatory subunit B'', alpha
chr2_+_92559929 Show fit	0.01	ENSRNOT00000033404	tGap1 Links NCBI RGD Ensembl Show fit	GTPase activating protein testicular GAP1
chr16_+_32449116 Show fit	0.01	ENSRNOT00000050549	Clcn3 Links NCBI RGD Ensembl Show fit	chloride voltage-gated channel 3
chr11_-_25456836 Show fit	0.01	ENSRNOT00000085444	Adamts5 Links NCBI RGD Ensembl Show fit	ADAM metallopeptidase with thrombospondin type 1 motif, 5
chr3_+_152294656 Show fit	0.01	ENSRNOT00000027067	Phf20 Links NCBI RGD Ensembl Show fit	PHD finger protein 20
chr12_+_41316764 Show fit	0.01	ENSRNOT00000090867	Oas3 Links NCBI RGD Ensembl Show fit	2'-5'-oligoadenylate synthetase 3
chr7_-_132143470 Show fit	0.01	ENSRNOT00000038946 ENSRNOT00000044092 ENSRNOT00000066528 ENSRNOT00000045553 ENSRNOT00000046744 ENSRNOT00000055742	Kif21a Links NCBI RGD Ensembl Show fit	kinesin family member 21A
chr5_+_133819726 Show fit	0.01	ENSRNOT00000081075	Stil Links NCBI RGD Ensembl Show fit	Scl/Tal1 interrupting locus
chr1_-_251387002 Show fit	0.01	ENSRNOT00000092063	Atad1 Links NCBI RGD Ensembl Show fit	ATPase family, AAA domain containing 1
chr20_+_41266566 Show fit	0.01	ENSRNOT00000000653	Frk Links NCBI RGD Ensembl Show fit	fyn-related Src family tyrosine kinase
chr14_-_72122158 Show fit	0.01	ENSRNOT00000064495	C1qtnf7 Links NCBI RGD Ensembl Show fit	C1q and tumor necrosis factor related protein 7
chrX_-_63291371 Show fit	0.01	ENSRNOT00000082421	Eif2s3 Links NCBI RGD Ensembl Show fit	eukaryotic translation initiation factor 2 subunit gamma
chr3_-_113423473 Show fit	0.01	ENSRNOT00000064982	Serinc4 Links NCBI RGD Ensembl Show fit	serine incorporator 4
chr3_-_104018861 Show fit	0.01	ENSRNOT00000008387	Chrm5 Links NCBI RGD Ensembl Show fit	cholinergic receptor, muscarinic 5
chr20_+_49319307 Show fit	0.01	ENSRNOT00000057078	Atg5 Links NCBI RGD Ensembl Show fit	autophagy related 5
chr7_-_40315377 Show fit	0.01	ENSRNOT00000091319 ENSRNOT00000036141	RGD1307947 Links NCBI RGD Ensembl Show fit	similar to RIKEN cDNA C430008C19
chr2_+_127459012 Show fit	0.01	ENSRNOT00000093685 ENSRNOT00000072675	Intu Links NCBI RGD Ensembl Show fit	inturned planar cell polarity protein
chr12_-_51877624 Show fit	0.01	ENSRNOT00000056800	Chek2 Links NCBI RGD Ensembl Show fit	checkpoint kinase 2
chr19_-_37528011 Show fit	0.01	ENSRNOT00000059628	Agrp Links NCBI RGD Ensembl Show fit	agouti related neuropeptide
chr2_-_128675408 Show fit	0.01	ENSRNOT00000019256	Sclt1 Links NCBI RGD Ensembl Show fit	sodium channel and clathrin linker 1
chr10_+_38661901 Show fit	0.01	ENSRNOT00000009098	Zcchc10 Links NCBI RGD Ensembl Show fit	zinc finger CCHC-type containing 10
chr6_-_38007162 Show fit	0.01	ENSRNOT00000044583	AABR07063632.1 Links NCBI RGD Ensembl Show fit
chr3_-_48604097 Show fit	0.01	ENSRNOT00000009620	Ifih1 Links NCBI RGD Ensembl Show fit	interferon induced with helicase C domain 1
chrX_+_124631881 Show fit	0.01	ENSRNOT00000009329	Atp1b4 Links NCBI RGD Ensembl Show fit	ATPase Na+/K+ transporting family member beta 4
chr9_+_73334618 Show fit	0.01	ENSRNOT00000092717	Map2 Links NCBI RGD Ensembl Show fit	microtubule-associated protein 2
chr8_+_85259982 Show fit	0.01	ENSRNOT00000010409	Elovl5 Links NCBI RGD Ensembl Show fit	ELOVL fatty acid elongase 5
chr6_+_108009251 Show fit	0.01	ENSRNOT00000059073	Ptgr2 Links NCBI RGD Ensembl Show fit	prostaglandin reductase 2
chr15_-_88036354 Show fit	0.01	ENSRNOT00000014747	Ednrb Links NCBI RGD Ensembl Show fit	endothelin receptor type B
chrX_+_110016995 Show fit	0.00	ENSRNOT00000093542	Nrk Links NCBI RGD Ensembl Show fit	Nik related kinase
chrX_+_157759624 Show fit	0.00	ENSRNOT00000003192	LOC686087 Links NCBI RGD Ensembl Show fit	similar to motile sperm domain containing 1
chr19_-_11669578 Show fit	0.00	ENSRNOT00000026373	Gnao1 Links NCBI RGD Ensembl Show fit	G protein subunit alpha o1
chr4_-_66955732 Show fit	0.00	ENSRNOT00000084282	Kdm7a Links NCBI RGD Ensembl Show fit	lysine (K)-specific demethylase 7A
chr1_-_67284864 Show fit	0.00	ENSRNOT00000082908	LOC691661 Links NCBI RGD Ensembl Show fit	similar to zinc finger and SCAN domain containing 4
chrX_-_138237157 Show fit	0.00	ENSRNOT00000003414	Rap2c Links NCBI RGD Ensembl Show fit	RAP2C, member of RAS oncogene family
chr6_-_95934296 Show fit	0.00	ENSRNOT00000034338	Six1 Links NCBI RGD Ensembl Show fit	SIX homeobox 1
chr13_+_67545430 Show fit	0.00	ENSRNOT00000003405	Pdc Links NCBI RGD Ensembl Show fit	phosducin
chr11_-_44292884 Show fit	0.00	ENSRNOT00000084060	Dcbld2 Links NCBI RGD Ensembl Show fit	discoidin, CUB and LCCL domain containing 2
chr3_+_55960067 Show fit	0.00	ENSRNOT00000010216	Ppig Links NCBI RGD Ensembl Show fit	peptidylprolyl isomerase G
chr3_-_113423149 Show fit	0.00	ENSRNOT00000021008	Serinc4 Links NCBI RGD Ensembl Show fit	serine incorporator 4
chr16_-_930527 Show fit	0.00	ENSRNOT00000014787	Spin1 Links NCBI RGD Ensembl Show fit	spindlin 1
chr10_+_104483042 Show fit	0.00	ENSRNOT00000007362	Sap30bp Links NCBI RGD Ensembl Show fit	SAP30 binding protein
chr2_+_41442241 Show fit	0.00	ENSRNOT00000067546	Pde4d Links NCBI RGD Ensembl Show fit	phosphodiesterase 4D
chr10_+_63635219 Show fit	0.00	ENSRNOT00000081813 ENSRNOT00000005016	Prpf8 Links NCBI RGD Ensembl Show fit	pre-mRNA processing factor 8
chr8_+_85355766 Show fit	0.00	ENSRNOT00000010583	Gcm1 Links NCBI RGD Ensembl Show fit	glial cells missing homolog 1
chr10_+_56445647 Show fit	0.00	ENSRNOT00000056870	Tmem256 Links NCBI RGD Ensembl Show fit	transmembrane protein 256
chr2_+_128675814 Show fit	0.00	ENSRNOT00000058366	RGD1359508 Links NCBI RGD Ensembl Show fit	similar to protein C33A12.3
chr4_-_163762434 Show fit	0.00	ENSRNOT00000081854	Ly49si1 Links NCBI RGD Ensembl Show fit	immunoreceptor Ly49si1
chr8_+_116657371 Show fit	0.00	ENSRNOT00000024966	Mon1a Links NCBI RGD Ensembl Show fit	MON1 homolog A, secretory trafficking associated
chr3_-_60611924 Show fit	0.00	ENSRNOT00000068745	Chn1 Links NCBI RGD Ensembl Show fit	chimerin 1
chr5_-_102743417 Show fit	0.00	ENSRNOT00000067389	Bnc2 Links NCBI RGD Ensembl Show fit	basonuclin 2
chr11_-_71757801 Show fit	0.00	ENSRNOT00000029572	Smco1 Links NCBI RGD Ensembl Show fit	single-pass membrane protein with coiled-coil domains 1
chr1_-_231530690 Show fit	0.00	ENSRNOT00000087140 ENSRNOT00000018452 ENSRNOT00000018272	Tle4 Links NCBI RGD Ensembl Show fit	transducin-like enhancer of split 4

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Gene overrepresentation in biological process category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.1	GO:1990414	replication-born double-strand break repair via sister chromatid exchange(GO:1990414)

Gene overrepresentation in molecular function category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.1	GO:0005173	stem cell factor receptor binding(GO:0005173)
0.0	0.1	GO:0009378	four-way junction helicase activity(GO:0009378)