GSE49485: Hypoxia transcriptome sequencing of rat brain.
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
Tbl1xr1 | rn6_v1_chr2_+_107233054_107233054 | 0.20 | 7.4e-01 | Click! |
Foxj3 | rn6_v1_chr5_+_138605793_138605793 | -0.16 | 8.0e-01 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr11_+_82052774 Show fit | 1.73 |
ENSRNOT00000062045
|
|
|
chr7_-_130368819 Show fit | 1.64 |
ENSRNOT00000064328
|
synaptonemal complex central element protein 3 |
|
chr2_-_157058194 Show fit | 1.59 |
ENSRNOT00000076409
|
|
|
chrX_+_159081445 Show fit | 1.57 |
ENSRNOT00000056688
|
|
|
chr9_+_27343853 Show fit | 1.50 |
ENSRNOT00000072794
|
transmembrane protein 14A |
|
chr14_+_63405408 Show fit | 1.49 |
ENSRNOT00000086658
|
|
|
chr8_-_104155775 Show fit | 1.43 |
ENSRNOT00000042885
|
60S ribosomal protein L31-like |
|
chr6_-_87427153 Show fit | 1.39 |
ENSRNOT00000071999
|
|
|
chr6_-_95502775 Show fit | 1.37 |
ENSRNOT00000074990
ENSRNOT00000034289 |
dehydrogenase/reductase (SDR family) member 7-like 1 |
|
chr1_-_48891130 Show fit | 1.37 |
ENSRNOT00000083884
|
|
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 1.7 | GO:0003351 | epithelial cilium movement(GO:0003351) |
0.1 | 1.7 | GO:0007130 | synaptonemal complex assembly(GO:0007130) |
0.0 | 1.7 | GO:1902807 | negative regulation of cell cycle G1/S phase transition(GO:1902807) |
0.2 | 1.6 | GO:0086046 | membrane depolarization during SA node cell action potential(GO:0086046) |
0.1 | 1.4 | GO:0046548 | retinal rod cell development(GO:0046548) |
0.1 | 1.4 | GO:0030261 | chromosome condensation(GO:0030261) |
0.0 | 1.4 | GO:0035456 | response to interferon-beta(GO:0035456) |
0.2 | 1.2 | GO:0016080 | synaptic vesicle targeting(GO:0016080) |
0.1 | 1.2 | GO:0070327 | thyroid hormone transport(GO:0070327) |
0.1 | 1.2 | GO:0050966 | detection of mechanical stimulus involved in sensory perception of pain(GO:0050966) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 2.4 | GO:0009897 | external side of plasma membrane(GO:0009897) |
0.2 | 2.3 | GO:1990454 | L-type voltage-gated calcium channel complex(GO:1990454) |
0.2 | 1.8 | GO:0000801 | central element(GO:0000801) |
0.0 | 1.8 | GO:0022625 | cytosolic large ribosomal subunit(GO:0022625) |
0.0 | 1.7 | GO:0022627 | cytosolic small ribosomal subunit(GO:0022627) |
0.1 | 1.6 | GO:0000242 | pericentriolar material(GO:0000242) |
0.0 | 1.6 | GO:0005930 | axoneme(GO:0005930) ciliary plasm(GO:0097014) |
0.1 | 1.4 | GO:0034706 | sodium channel complex(GO:0034706) |
0.0 | 1.4 | GO:0005834 | heterotrimeric G-protein complex(GO:0005834) |
0.0 | 1.4 | GO:0016605 | PML body(GO:0016605) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 7.3 | GO:0003735 | structural constituent of ribosome(GO:0003735) |
0.1 | 2.0 | GO:0070330 | aromatase activity(GO:0070330) |
0.0 | 1.9 | GO:0036459 | thiol-dependent ubiquitinyl hydrolase activity(GO:0036459) |
0.3 | 1.6 | GO:0086059 | voltage-gated calcium channel activity involved SA node cell action potential(GO:0086059) |
0.1 | 1.5 | GO:0004745 | retinol dehydrogenase activity(GO:0004745) |
0.1 | 1.4 | GO:0004012 | phospholipid-translocating ATPase activity(GO:0004012) |
0.1 | 1.4 | GO:0004016 | adenylate cyclase activity(GO:0004016) |
0.0 | 1.4 | GO:0048487 | beta-tubulin binding(GO:0048487) |
0.0 | 1.4 | GO:0004984 | olfactory receptor activity(GO:0004984) |
0.3 | 1.3 | GO:0005136 | interleukin-4 receptor binding(GO:0005136) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 2.2 | PID AR NONGENOMIC PATHWAY | Nongenotropic Androgen signaling |
0.1 | 2.1 | PID RHODOPSIN PATHWAY | Visual signal transduction: Rods |
0.0 | 1.9 | PID RXR VDR PATHWAY | RXR and RAR heterodimerization with other nuclear receptor |
0.0 | 1.7 | PID FOXM1 PATHWAY | FOXM1 transcription factor network |
0.1 | 1.5 | PID TCR JNK PATHWAY | JNK signaling in the CD4+ TCR pathway |
0.1 | 1.5 | PID ANTHRAX PATHWAY | Cellular roles of Anthrax toxin |
0.1 | 1.5 | PID IL12 STAT4 PATHWAY | IL12 signaling mediated by STAT4 |
0.0 | 1.5 | PID AURORA B PATHWAY | Aurora B signaling |
0.0 | 1.2 | PID ATR PATHWAY | ATR signaling pathway |
0.0 | 1.1 | PID EPHA FWDPATHWAY | EPHA forward signaling |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 2.8 | REACTOME NUCLEAR RECEPTOR TRANSCRIPTION PATHWAY | Genes involved in Nuclear Receptor transcription pathway |
0.0 | 2.1 | REACTOME INTERFERON ALPHA BETA SIGNALING | Genes involved in Interferon alpha/beta signaling |
0.2 | 2.0 | REACTOME TRANSPORT OF ORGANIC ANIONS | Genes involved in Transport of organic anions |
0.1 | 1.7 | REACTOME ANTIGEN ACTIVATES B CELL RECEPTOR LEADING TO GENERATION OF SECOND MESSENGERS | Genes involved in Antigen Activates B Cell Receptor Leading to Generation of Second Messengers |
0.0 | 1.6 | REACTOME PEPTIDE CHAIN ELONGATION | Genes involved in Peptide chain elongation |
0.1 | 1.5 | REACTOME GLUCURONIDATION | Genes involved in Glucuronidation |
0.1 | 1.4 | REACTOME GLUTAMATE NEUROTRANSMITTER RELEASE CYCLE | Genes involved in Glutamate Neurotransmitter Release Cycle |
0.1 | 1.4 | REACTOME CTLA4 INHIBITORY SIGNALING | Genes involved in CTLA4 inhibitory signaling |
0.0 | 1.4 | REACTOME INTERFERON GAMMA SIGNALING | Genes involved in Interferon gamma signaling |
0.0 | 1.4 | REACTOME G ALPHA Z SIGNALLING EVENTS | Genes involved in G alpha (z) signalling events |