GSE49485: Hypoxia transcriptome sequencing of rat brain.

• Motif significance table
• Sample table
• Mean activities
• All promoters sorted by FOV

• Activity table
• Activity delta table
• Regulatory interactions
• Motifs sorted by significance
• Expression table
• Download the whole report

Gene Symbol	Gene ID	Gene Info
En2 Links NCBI RGD Ensembl	ENSRNOG00000006846	engrailed homeobox 2

Gene	Promoter	Pearson corr. coef.	P-value	Plot
En2	rn6_v1_chr4_+_438668_438668	0.52	3.7e-01	Click!

Promoter	Log-likelihood	Transcript	Gene	Gene Info
chr12_-_2174131 Show fit	0.04	ENSRNOT00000001313	Pcp2 Links NCBI RGD Ensembl Show fit	Purkinje cell protein 2
chr9_+_117795132 Show fit	0.02	ENSRNOT00000086943	Akain1 Links NCBI RGD Ensembl Show fit	A-kinase anchor inhibitor 1
chr15_+_11298478 Show fit	0.01	ENSRNOT00000007672	Lrrc3b Links NCBI RGD Ensembl Show fit	leucine rich repeat containing 3B
chr5_-_78985990 Show fit	0.01	ENSRNOT00000009248	Ambp Links NCBI RGD Ensembl Show fit	alpha-1-microglobulin/bikunin precursor
chrM_+_11736 Show fit	0.01	ENSRNOT00000048767	Mt-nd5 Links NCBI RGD Ensembl Show fit	mitochondrially encoded NADH dehydrogenase 5
chr10_-_6870011 Show fit	0.01	ENSRNOT00000003439	RGD1309748 Links NCBI RGD Ensembl Show fit	similar to CG4768-PA
chr2_-_210088949 Show fit	0.00	ENSRNOT00000070994	Rbm15 Links NCBI RGD Ensembl Show fit	RNA binding motif protein 15
chr18_+_36829062 Show fit	0.00	ENSRNOT00000025467 ENSRNOT00000086979	Tcerg1 Links NCBI RGD Ensembl Show fit	transcription elongation regulator 1
chrM_+_9451 Show fit	0.00	ENSRNOT00000041241	Mt-nd3 Links NCBI RGD Ensembl Show fit	mitochondrially encoded NADH dehydrogenase 3
chr11_-_29710849 Show fit	0.00	ENSRNOT00000029345	Krtap11-1 Links NCBI RGD Ensembl Show fit	keratin associated protein 11-1
chr1_-_101095594 Show fit	0.00	ENSRNOT00000027944	Fcgrt Links NCBI RGD Ensembl Show fit	Fc fragment of IgG receptor and transporter
chr5_-_7941822 Show fit	0.00	ENSRNOT00000079917	Prex2 Links NCBI RGD Ensembl Show fit	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 2
chr1_-_219369587 Show fit	0.00	ENSRNOT00000000599	Aip Links NCBI RGD Ensembl Show fit	aryl-hydrocarbon receptor-interacting protein
chr10_-_87232723 Show fit	0.00	ENSRNOT00000015150	Krt25 Links NCBI RGD Ensembl Show fit	keratin 25
chr17_-_78735324 Show fit	0.00	ENSRNOT00000036299	Cdnf Links NCBI RGD Ensembl Show fit	cerebral dopamine neurotrophic factor
chr12_-_24775891 Show fit	0.00	ENSRNOT00000074851	Wbscr27 Links NCBI RGD Ensembl Show fit	Williams Beuren syndrome chromosome region 27
chr4_+_147832136 Show fit	0.00	ENSRNOT00000064603	Rho Links NCBI RGD Ensembl Show fit	rhodopsin
chr18_+_16544508 Show fit	0.00	ENSRNOT00000020601	Elp2 Links NCBI RGD Ensembl Show fit	elongator acetyltransferase complex subunit 2
chr3_+_111160205 Show fit	0.00	ENSRNOT00000019392	Chac1 Links NCBI RGD Ensembl Show fit	ChaC glutathione-specific gamma-glutamylcyclotransferase 1
chr8_+_47674321 Show fit	0.00	ENSRNOT00000026170 ENSRNOT00000078776	Trim29 Links NCBI RGD Ensembl Show fit	tripartite motif-containing 29
chr1_-_164101578 Show fit	0.00	ENSRNOT00000022176	Uvrag Links NCBI RGD Ensembl Show fit	UV radiation resistance associated
chr5_+_137255924 Show fit	0.00	ENSRNOT00000088022 ENSRNOT00000092755	Elovl1 Links NCBI RGD Ensembl Show fit	ELOVL fatty acid elongase 1
chr11_-_60882379 Show fit	0.00	ENSRNOT00000002799	Cd200r1 Links NCBI RGD Ensembl Show fit	CD200 receptor 1
chr5_+_135574172 Show fit	0.00	ENSRNOT00000023416	Tesk2 Links NCBI RGD Ensembl Show fit	testis-specific kinase 2
chr19_-_17399548 Show fit	0.00	ENSRNOT00000075991	Chd9 Links NCBI RGD Ensembl Show fit	chromodomain helicase DNA binding protein 9
chr9_-_10757954 Show fit	0.00	ENSRNOT00000075265	Uhrf1 Links NCBI RGD Ensembl Show fit	ubiquitin-like with PHD and ring finger domains 1
chr10_-_87521514 Show fit	0.00	ENSRNOT00000084668 ENSRNOT00000071705	Krtap2-4l Links NCBI RGD Ensembl Show fit	keratin associated protein 2-4-like
chr3_-_57607683 Show fit	0.00	ENSRNOT00000093222 ENSRNOT00000058524	Mettl8 Links NCBI RGD Ensembl Show fit	methyltransferase like 8
chr10_+_91217079 Show fit	0.00	ENSRNOT00000004218	Hexim2 Links NCBI RGD Ensembl Show fit	hexamethylene bis-acetamide inducible 2
chr14_+_76732650 Show fit	0.00	ENSRNOT00000088197	Clnk Links NCBI RGD Ensembl Show fit	cytokine-dependent hematopoietic cell linker
chr4_-_170740274 Show fit	0.00	ENSRNOT00000012212	Gucy2c Links NCBI RGD Ensembl Show fit	guanylate cyclase 2C
chr12_-_22138382 Show fit	0.00	ENSRNOT00000001899	Lrch4 Links NCBI RGD Ensembl Show fit	leucine rich repeats and calponin homology domain containing 4
chr10_+_63677396 Show fit	0.00	ENSRNOT00000005100	Slc43a2 Links NCBI RGD Ensembl Show fit	solute carrier family 43 member 2
chr13_+_44424689 Show fit	0.00	ENSRNOT00000005206	Acmsd Links NCBI RGD Ensembl Show fit	aminocarboxymuconate semialdehyde decarboxylase
chr4_-_10822879 Show fit	0.00	ENSRNOT00000018040	Tmem60 Links NCBI RGD Ensembl Show fit	transmembrane protein 60
chr4_+_10823281 Show fit	0.00	ENSRNOT00000066739	Phtf2 Links NCBI RGD Ensembl Show fit	putative homeodomain transcription factor 2
chrM_+_9870 Show fit	0.00	ENSRNOT00000044582	Mt-nd4l Links NCBI RGD Ensembl Show fit	mitochondrially encoded NADH 4L dehydrogenase
chr18_-_27452420 Show fit	0.00	ENSRNOT00000037888	Cdc23 Links NCBI RGD Ensembl Show fit	cell division cycle 23
chr1_+_243662823 Show fit	0.00	ENSRNOT00000067372	Dmrt2 Links NCBI RGD Ensembl Show fit	doublesex and mab-3 related transcription factor 2
chr17_+_78735598 Show fit	0.00	ENSRNOT00000020854	Hspa14 Links NCBI RGD Ensembl Show fit	heat shock protein family A, member 14
chr6_-_106971250 Show fit	0.00	ENSRNOT00000010926	Dpf3 Links NCBI RGD Ensembl Show fit	double PHD fingers 3
chr1_-_247821728 Show fit	0.00	ENSRNOT00000021958	Ermp1 Links NCBI RGD Ensembl Show fit	endoplasmic reticulum metallopeptidase 1
chr18_-_26656879 Show fit	0.00	ENSRNOT00000086729	Epb41l4a Links NCBI RGD Ensembl Show fit	erythrocyte membrane protein band 4.1 like 4A
chr11_-_60679555 Show fit	0.00	ENSRNOT00000059735	Ccdc80 Links NCBI RGD Ensembl Show fit	coiled-coil domain containing 80
chr14_+_36216002 Show fit	0.00	ENSRNOT00000038506	Scfd2 Links NCBI RGD Ensembl Show fit	sec1 family domain containing 2
chr9_-_10757720 Show fit	0.00	ENSRNOT00000083848	Uhrf1 Links NCBI RGD Ensembl Show fit	ubiquitin-like with PHD and ring finger domains 1
chr7_+_78558701 Show fit	0.00	ENSRNOT00000006393	Rims2 Links NCBI RGD Ensembl Show fit	regulating synaptic membrane exocytosis 2
chr11_-_71284939 Show fit	0.00	ENSRNOT00000002421	AABR07034428.1 Links NCBI RGD Ensembl Show fit
chr4_+_55772627 Show fit	0.00	ENSRNOT00000048252	Snd1 Links NCBI RGD Ensembl Show fit	staphylococcal nuclease and tudor domain containing 1
chr12_-_54885 Show fit	0.00	ENSRNOT00000090447	AABR07034833.1 Links NCBI RGD Ensembl Show fit
chr3_-_151032302 Show fit	0.00	ENSRNOT00000025315	Ggt7 Links NCBI RGD Ensembl Show fit	gamma-glutamyltransferase 7
chr19_-_24732024 Show fit	0.00	ENSRNOT00000037608	Tecr Links NCBI RGD Ensembl Show fit	trans-2,3-enoyl-CoA reductase
chr8_+_63379087 Show fit	0.00	ENSRNOT00000012091 ENSRNOT00000012295	Nptn Links NCBI RGD Ensembl Show fit	neuroplastin
chr2_+_195651930 Show fit	0.00	ENSRNOT00000028299	Tdrkh Links NCBI RGD Ensembl Show fit	tudor and KH domain containing
chr5_-_168734296 Show fit	0.00	ENSRNOT00000066120	Camta1 Links NCBI RGD Ensembl Show fit	calmodulin binding transcription activator 1
chr7_-_107391184 Show fit	0.00	ENSRNOT00000056793	Tmem71 Links NCBI RGD Ensembl Show fit	transmembrane protein 71
chr20_-_45260119 Show fit	0.00	ENSRNOT00000000718	Slc16a10 Links NCBI RGD Ensembl Show fit	solute carrier family 16 member 10
chr18_+_31396922 Show fit	0.00	ENSRNOT00000026273	RGD735029 Links NCBI RGD Ensembl Show fit	SEL1 domain containing protein RGD735029
chr17_-_45746753 Show fit	0.00	ENSRNOT00000077475	RGD1564243 Links NCBI RGD Ensembl Show fit	similar to brain Zn-finger protein
chr6_+_8219385 Show fit	0.00	ENSRNOT00000040509	Ppm1b Links NCBI RGD Ensembl Show fit	protein phosphatase, Mg2+/Mn2+ dependent, 1B
chr1_+_13595295 Show fit	0.00	ENSRNOT00000079250	Nhsl1 Links NCBI RGD Ensembl Show fit	NHS-like 1
chr1_+_60717386 Show fit	0.00	ENSRNOT00000015019	Ppp2r1a Links NCBI RGD Ensembl Show fit	protein phosphatase 2 scaffold subunit A alpha
chrX_+_124321551 Show fit	0.00	ENSRNOT00000074486	LOC100910807 Links NCBI RGD Ensembl Show fit	transcriptional regulator Kaiso-like
chrX_+_105147534 Show fit	0.00	ENSRNOT00000046288	Cenpi Links NCBI RGD Ensembl Show fit	centromere protein I
chr2_+_72006099 Show fit	0.00	ENSRNOT00000034044	Cdh12 Links NCBI RGD Ensembl Show fit	cadherin 12
chrM_+_7919 Show fit	0.00	ENSRNOT00000046108	Mt-atp6 Links NCBI RGD Ensembl Show fit	mitochondrially encoded ATP synthase 6
chr14_+_4125380 Show fit	0.00	ENSRNOT00000002882	Zfp644 Links NCBI RGD Ensembl Show fit	zinc finger protein 644
chr4_-_88684415 Show fit	0.00	ENSRNOT00000009001	LOC500148 Links NCBI RGD Ensembl Show fit	similar to 40S ribosomal protein S7 (S8)
chr5_+_154668179 Show fit	0.00	ENSRNOT00000015971	Hnrnpr Links NCBI RGD Ensembl Show fit	heterogeneous nuclear ribonucleoprotein R
chr6_+_128750795 Show fit	0.00	ENSRNOT00000005781	Glrx5 Links NCBI RGD Ensembl Show fit	glutaredoxin 5
chr20_+_44680449 Show fit	0.00	ENSRNOT00000000728	Traf3ip2 Links NCBI RGD Ensembl Show fit	Traf3 interacting protein 2
chr18_-_27424090 Show fit	0.00	ENSRNOT00000087968	Brd8 Links NCBI RGD Ensembl Show fit	bromodomain containing 8
chr7_-_143228060 Show fit	0.00	ENSRNOT00000088923 ENSRNOT00000012640	Krt75 Links NCBI RGD Ensembl Show fit	keratin 75
chr3_+_114129589 Show fit	0.00	ENSRNOT00000056119	Terb2 Links NCBI RGD Ensembl Show fit	telomere repeat binding bouquet formation protein 2
chr18_+_81694808 Show fit	0.00	ENSRNOT00000020446	Cyb5a Links NCBI RGD Ensembl Show fit	cytochrome b5 type A
chr1_-_276228574 Show fit	0.00	ENSRNOT00000021746	Gucy2g Links NCBI RGD Ensembl Show fit	guanylate cyclase 2G
chr5_-_9035811 Show fit	0.00	ENSRNOT00000082023	Mcmdc2 Links NCBI RGD Ensembl Show fit	minichromosome maintenance domain containing 2
chr13_+_79378733 Show fit	0.00	ENSRNOT00000039221	Tnfsf18 Links NCBI RGD Ensembl Show fit	tumor necrosis factor superfamily member 18
chr1_-_85517360 Show fit	0.00	ENSRNOT00000026114	Eid2 Links NCBI RGD Ensembl Show fit	EP300 interacting inhibitor of differentiation 2
chr12_-_35979193 Show fit	0.00	ENSRNOT00000071104	Tmem132b Links NCBI RGD Ensembl Show fit	transmembrane protein 132B
chr3_+_138508899 Show fit	0.00	ENSRNOT00000009437	Kat14 Links NCBI RGD Ensembl Show fit	lysine acetyltransferase 14
chr13_-_73638073 Show fit	0.00	ENSRNOT00000005195	Cep350 Links NCBI RGD Ensembl Show fit	centrosomal protein 350
chr9_+_81566074 Show fit	0.00	ENSRNOT00000074131 ENSRNOT00000046229 ENSRNOT00000090383	Pnkd Links NCBI RGD Ensembl Show fit	paroxysmal nonkinesigenic dyskinesia
chr2_+_189609800 Show fit	0.00	ENSRNOT00000089016	Slc39a1 Links NCBI RGD Ensembl Show fit	solute carrier family 39 member 1
chr6_-_7058314 Show fit	0.00	ENSRNOT00000045996	Haao Links NCBI RGD Ensembl Show fit	3-hydroxyanthranilate 3,4-dioxygenase
chr8_+_116318963 Show fit	0.00	ENSRNOT00000036556	Tusc2 Links NCBI RGD Ensembl Show fit	tumor suppressor candidate 2
chr4_+_55772377 Show fit	0.00	ENSRNOT00000047698	Snd1 Links NCBI RGD Ensembl Show fit	staphylococcal nuclease and tudor domain containing 1
chr18_+_79773608 Show fit	0.00	ENSRNOT00000088484	Zfp516 Links NCBI RGD Ensembl Show fit	zinc finger protein 516
chr14_-_104612597 Show fit	0.00	ENSRNOT00000007002	Slc1a4 Links NCBI RGD Ensembl Show fit	solute carrier family 1 member 4
chr2_-_256154584 Show fit	0.00	ENSRNOT00000072487	AABR07013776.1 Links NCBI RGD Ensembl Show fit
chr4_+_6827429 Show fit	0.00	ENSRNOT00000071737	Rheb Links NCBI RGD Ensembl Show fit	Ras homolog enriched in brain
chr8_-_45137893 Show fit	0.00	ENSRNOT00000010743	RGD1309108 Links NCBI RGD Ensembl Show fit	similar to hypothetical protein FLJ23554
chr14_-_43694584 Show fit	0.00	ENSRNOT00000041866	AABR07072400.1 Links NCBI RGD Ensembl Show fit
chr1_-_48033343 Show fit	0.00	ENSRNOT00000019531 ENSRNOT00000076422	Tcp1 Links NCBI RGD Ensembl Show fit	t-complex 1
chr8_-_116391158 Show fit	0.00	ENSRNOT00000078720 ENSRNOT00000022550	Gnai2 Links NCBI RGD Ensembl Show fit	G protein subunit alpha i2
chr10_+_5199226 Show fit	0.00	ENSRNOT00000003544	Dexi Links NCBI RGD Ensembl Show fit	dexamethasone-induced transcript
chr6_-_124735741 Show fit	0.00	ENSRNOT00000064716 ENSRNOT00000091693	Rps6ka5 Links NCBI RGD Ensembl Show fit	ribosomal protein S6 kinase A5
chr9_+_15513063 Show fit	0.00	ENSRNOT00000020499	Taf8 Links NCBI RGD Ensembl Show fit	TATA-box binding protein associated factor 8
chr11_+_24266345 Show fit	0.00	ENSRNOT00000046973	Jam2 Links NCBI RGD Ensembl Show fit	junctional adhesion molecule 2

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