Project
GSE49485: Hypoxia transcriptome sequencing of rat brain.
Navigation
Downloads
Results for Mef2d_Mef2a
Z-value: 0.42
Motif logo
Transcription factors associated with Mef2d_Mef2a
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| Mef2d | rn6_v1_chr2_+_187512164_187512164 | 0.61 | 2.7e-01 | Click! |
| Mef2a | rn6_v1_chr1_-_128287151_128287151 | 0.44 | 4.6e-01 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| chr16_-_73827488 Show fit | 0.35 |
ENSRNOT00000064070
|
ankyrin 1 |
|
| chr4_+_148782479 Show fit | 0.33 |
ENSRNOT00000018133
|
similar to hypothetical protein MGC6835 |
|
| chr18_-_26211445 Show fit | 0.32 |
ENSRNOT00000027739
|
neuronal regeneration related protein |
|
| chr2_+_196334626 Show fit | 0.30 |
ENSRNOT00000050914
ENSRNOT00000028645 ENSRNOT00000090729 |
semaphorin 6C |
|
| chrX_-_40086870 Show fit | 0.23 |
ENSRNOT00000010027
|
small muscle protein, X-linked |
|
| chr3_-_170040953 Show fit | 0.19 |
ENSRNOT00000005866
|
cerebellin 4 precursor |
|
| chr16_+_72388880 Show fit | 0.19 |
ENSRNOT00000072459
|
similar to Protein C8orf4 (Thyroid cancer protein 1) (TC-1) |
|
| chr2_+_204512302 Show fit | 0.18 |
ENSRNOT00000021846
|
calsequestrin 2 |
|
| chr1_-_25839198 Show fit | 0.18 |
ENSRNOT00000090388
ENSRNOT00000092757 ENSRNOT00000042072 |
triadin |
|
| chr2_-_45518502 Show fit | 0.15 |
ENSRNOT00000014627
|
heat shock protein family B (small) member 3 |
Network of associatons between targets according to the STRING database.
First level regulatory network of Mef2d_Mef2a
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 0.3 | GO:0006779 | porphyrin-containing compound biosynthetic process(GO:0006779) |
| 0.1 | 0.2 | GO:0090158 | endoplasmic reticulum membrane organization(GO:0090158) |
| 0.0 | 0.2 | GO:0071313 | cellular response to caffeine(GO:0071313) |
| 0.0 | 0.1 | GO:1903544 | cellular response to interleukin-11(GO:0071348) response to butyrate(GO:1903544) |
| 0.0 | 0.1 | GO:0090526 | regulation of gluconeogenesis involved in cellular glucose homeostasis(GO:0090526) |
| 0.0 | 0.1 | GO:1900748 | positive regulation of vascular endothelial growth factor signaling pathway(GO:1900748) |
| 0.0 | 0.1 | GO:0071376 | response to corticotropin-releasing hormone(GO:0043435) cellular response to corticotropin-releasing hormone stimulus(GO:0071376) |
| 0.0 | 0.1 | GO:0014878 | response to electrical stimulus involved in regulation of muscle adaptation(GO:0014878) |
| 0.0 | 0.1 | GO:0051365 | cellular response to potassium ion starvation(GO:0051365) |
| 0.0 | 0.1 | GO:1900220 | semaphorin-plexin signaling pathway involved in bone trabecula morphogenesis(GO:1900220) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 0.3 | GO:0014731 | spectrin-associated cytoskeleton(GO:0014731) |
| 0.1 | 0.2 | GO:0014701 | junctional sarcoplasmic reticulum membrane(GO:0014701) |
| 0.1 | 0.2 | GO:0033018 | sarcoplasmic reticulum lumen(GO:0033018) |
| 0.0 | 0.2 | GO:0097512 | cardiac myofibril(GO:0097512) |
| 0.0 | 0.1 | GO:0035976 | AP1 complex(GO:0035976) |
| 0.0 | 0.1 | GO:0005927 | muscle tendon junction(GO:0005927) |
| 0.0 | 0.1 | GO:0016012 | sarcoglycan complex(GO:0016012) |
| 0.0 | 0.1 | GO:0032593 | insulin-responsive compartment(GO:0032593) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 0.3 | GO:0008093 | cytoskeletal adaptor activity(GO:0008093) |
| 0.0 | 0.3 | GO:0030215 | semaphorin receptor binding(GO:0030215) |
| 0.0 | 0.1 | GO:0097363 | protein O-GlcNAc transferase activity(GO:0097363) |
| 0.0 | 0.1 | GO:0018479 | benzaldehyde dehydrogenase (NAD+) activity(GO:0018479) |
| 0.0 | 0.1 | GO:0001069 | regulatory region RNA binding(GO:0001069) |
| 0.0 | 0.1 | GO:0015467 | G-protein activated inward rectifier potassium channel activity(GO:0015467) |
| 0.0 | 0.1 | GO:0055056 | D-glucose transmembrane transporter activity(GO:0055056) |
| 0.0 | 0.1 | GO:0005332 | gamma-aminobutyric acid:sodium symporter activity(GO:0005332) |
| 0.0 | 0.0 | GO:1990050 | phosphatidic acid transporter activity(GO:1990050) |
| 0.0 | 0.0 | GO:0019002 | GMP binding(GO:0019002) |