GSE49485: Hypoxia transcriptome sequencing of rat brain.

• Motif significance table
• Sample table
• Mean activities
• All promoters sorted by FOV

• Activity table
• Activity delta table
• Regulatory interactions
• Motifs sorted by significance
• Expression table
• Download the whole report

Gene Symbol	Gene ID	Gene Info
Thra Links NCBI RGD Ensembl	ENSRNOG00000009066	thyroid hormone receptor alpha

Gene	Promoter	Pearson corr. coef.	P-value	Plot
Thra	rn6_v1_chr10_+_86657285_86657285	0.65	2.3e-01	Click!

Promoter	Log-likelihood	Transcript	Gene	Gene Info
chr6_-_115616766 Show fit	0.10	ENSRNOT00000006143 ENSRNOT00000045870	Sel1l Links NCBI RGD Ensembl Show fit	SEL1L ERAD E3 ligase adaptor subunit
chr3_+_95715193 Show fit	0.08	ENSRNOT00000089525	Pax6 Links NCBI RGD Ensembl Show fit	paired box 6
chr20_+_3827367 Show fit	0.08	ENSRNOT00000079967	Rxrb Links NCBI RGD Ensembl Show fit	retinoid X receptor beta
chr1_+_82174451 Show fit	0.07	ENSRNOT00000027783	Tmem145 Links NCBI RGD Ensembl Show fit	transmembrane protein 145
chr10_+_14547172 Show fit	0.06	ENSRNOT00000092043	Unkl Links NCBI RGD Ensembl Show fit	unkempt family like zinc finger
chr5_+_147069616 Show fit	0.05	ENSRNOT00000072908	Trim62 Links NCBI RGD Ensembl Show fit	tripartite motif-containing 62
chr8_-_61919874 Show fit	0.05	ENSRNOT00000064830	RGD1305464 Links NCBI RGD Ensembl Show fit	similar to human chromosome 15 open reading frame 39
chr6_+_110624856 Show fit	0.05	ENSRNOT00000014017	Vash1 Links NCBI RGD Ensembl Show fit	vasohibin 1
chr14_+_104250617 Show fit	0.05	ENSRNOT00000079874	Spred2 Links NCBI RGD Ensembl Show fit	sprouty-related, EVH1 domain containing 2
chrX_-_159841072 Show fit	0.05	ENSRNOT00000001158	Arhgef6 Links NCBI RGD Ensembl Show fit	Rac/Cdc42 guanine nucleotide exchange factor 6
chr3_+_80676820 Show fit	0.05	ENSRNOT00000084809	Ambra1 Links NCBI RGD Ensembl Show fit	autophagy and beclin 1 regulator 1
chr4_+_153385205 Show fit	0.04	ENSRNOT00000016561	Bcl2l13 Links NCBI RGD Ensembl Show fit	BCL2 like 13
chr7_-_12424367 Show fit	0.04	ENSRNOT00000060698	Midn Links NCBI RGD Ensembl Show fit	midnolin
chr20_+_5008508 Show fit	0.04	ENSRNOT00000001153	Vwa7 Links NCBI RGD Ensembl Show fit	von Willebrand factor A domain containing 7
chr6_+_112203679 Show fit	0.03	ENSRNOT00000031205	Nrxn3 Links NCBI RGD Ensembl Show fit	neurexin 3
chr11_+_64601029 Show fit	0.03	ENSRNOT00000004138	Arhgap31 Links NCBI RGD Ensembl Show fit	Rho GTPase activating protein 31
chr8_-_47339343 Show fit	0.03	ENSRNOT00000081007	Arhgef12 Links NCBI RGD Ensembl Show fit	Rho guanine nucleotide exchange factor 12
chr1_-_214414763 Show fit	0.03	ENSRNOT00000025240 ENSRNOT00000077776	LOC100911440 Links NCBI RGD Ensembl Show fit	mitochondrial glutamate carrier 1-like
chr6_+_146784915 Show fit	0.03	ENSRNOT00000008362	Sp8 Links NCBI RGD Ensembl Show fit	Sp8 transcription factor
chr8_+_116332796 Show fit	0.03	ENSRNOT00000021408	Hyal1 Links NCBI RGD Ensembl Show fit	hyaluronoglucosaminidase 1
chr1_+_1784078 Show fit	0.03	ENSRNOT00000020098	Lats1 Links NCBI RGD Ensembl Show fit	large tumor suppressor kinase 1
chr13_-_35668968 Show fit	0.03	ENSRNOT00000042862 ENSRNOT00000003428	Epb41l5 Links NCBI RGD Ensembl Show fit	erythrocyte membrane protein band 4.1 like 5
chr5_+_116421894 Show fit	0.03	ENSRNOT00000080577 ENSRNOT00000086628 ENSRNOT00000004017	Nfia Links NCBI RGD Ensembl Show fit	nuclear factor I/A
chr6_-_135829953 Show fit	0.03	ENSRNOT00000080623 ENSRNOT00000039059	Cdc42bpb Links NCBI RGD Ensembl Show fit	CDC42 binding protein kinase beta
chr10_+_72486152 Show fit	0.03	ENSRNOT00000004193	RGD1310166 Links NCBI RGD Ensembl Show fit	similar to Chromodomain-helicase-DNA-binding protein 1 (CHD-1)
chr10_-_59762644 Show fit	0.03	ENSRNOT00000083390	Ctns Links NCBI RGD Ensembl Show fit	cystinosin, lysosomal cystine transporter
chr5_-_57632177 Show fit	0.02	ENSRNOT00000080787 ENSRNOT00000092581	Ubap2 Links NCBI RGD Ensembl Show fit	ubiquitin-associated protein 2
chr15_-_55209342 Show fit	0.02	ENSRNOT00000021752	Rb1 Links NCBI RGD Ensembl Show fit	RB transcriptional corepressor 1
chr7_-_33916338 Show fit	0.02	ENSRNOT00000005492	Cfap54 Links NCBI RGD Ensembl Show fit	cilia and flagella associated protein 54
chr16_+_19044607 Show fit	0.02	ENSRNOT00000085462	Med26 Links NCBI RGD Ensembl Show fit	mediator complex subunit 26
chr12_+_24761210 Show fit	0.02	ENSRNOT00000002003	Cldn4 Links NCBI RGD Ensembl Show fit	claudin 4
chr5_+_113725717 Show fit	0.02	ENSRNOT00000032248	Tek Links NCBI RGD Ensembl Show fit	TEK receptor tyrosine kinase
chrX_-_157095274 Show fit	0.02	ENSRNOT00000084088	Abcd1 Links NCBI RGD Ensembl Show fit	ATP binding cassette subfamily D member 1
chr10_+_59000397 Show fit	0.02	ENSRNOT00000021134	Mybbp1a Links NCBI RGD Ensembl Show fit	MYB binding protein 1a
chr3_-_2727616 Show fit	0.02	ENSRNOT00000061904	C8g Links NCBI RGD Ensembl Show fit	complement C8 gamma chain
chr1_+_88922433 Show fit	0.02	ENSRNOT00000045212	Nphs1 Links NCBI RGD Ensembl Show fit	NPHS1 nephrin
chr5_-_160219812 Show fit	0.02	ENSRNOT00000016333	Plekhm2 Links NCBI RGD Ensembl Show fit	pleckstrin homology and RUN domain containing M2
chrX_+_68752597 Show fit	0.02	ENSRNOT00000077039	Stard8 Links NCBI RGD Ensembl Show fit	StAR-related lipid transfer domain containing 8
chr9_+_111597037 Show fit	0.02	ENSRNOT00000021758	Fer Links NCBI RGD Ensembl Show fit	FER tyrosine kinase
chr11_+_84745904 Show fit	0.02	ENSRNOT00000002617	Klhl6 Links NCBI RGD Ensembl Show fit	kelch-like family member 6
chr10_-_18443934 Show fit	0.02	ENSRNOT00000059895 ENSRNOT00000080021	Ranbp17 Links NCBI RGD Ensembl Show fit	RAN binding protein 17
chr14_+_12218553 Show fit	0.02	ENSRNOT00000003237	Prkg2 Links NCBI RGD Ensembl Show fit	protein kinase, cGMP-dependent, type II
chr1_-_66212418 Show fit	0.02	ENSRNOT00000026074	LOC691722 Links NCBI RGD Ensembl Show fit	hypothetical protein LOC691722
chr2_+_198312428 Show fit	0.02	ENSRNOT00000028758	Sf3b4 Links NCBI RGD Ensembl Show fit	splicing factor 3b, subunit 4
chr5_+_14415841 Show fit	0.02	ENSRNOT00000010682	Rgs20 Links NCBI RGD Ensembl Show fit	regulator of G-protein signaling 20
chr1_+_224824799 Show fit	0.02	ENSRNOT00000024757	Slc22a6 Links NCBI RGD Ensembl Show fit	solute carrier family 22 member 6
chr17_+_36334147 Show fit	0.02	ENSRNOT00000050261	E2f3 Links NCBI RGD Ensembl Show fit	E2F transcription factor 3
chr4_-_145948996 Show fit	0.02	ENSRNOT00000043476	Atp2b2 Links NCBI RGD Ensembl Show fit	ATPase plasma membrane Ca2+ transporting 2
chr1_-_64446818 Show fit	0.02	ENSRNOT00000081980	Myadm Links NCBI RGD Ensembl Show fit	myeloid-associated differentiation marker
chr3_+_148510779 Show fit	0.01	ENSRNOT00000012156	Xkr7 Links NCBI RGD Ensembl Show fit	XK related 7
chr7_-_122926336 Show fit	0.01	ENSRNOT00000000205	Chadl Links NCBI RGD Ensembl Show fit	chondroadherin-like
chr17_+_77167740 Show fit	0.01	ENSRNOT00000042881	Optn Links NCBI RGD Ensembl Show fit	optineurin
chr7_-_142180997 Show fit	0.01	ENSRNOT00000087632	Tfcp2 Links NCBI RGD Ensembl Show fit	transcription factor CP2
chr6_+_29106141 Show fit	0.01	ENSRNOT00000084560	Atad2b Links NCBI RGD Ensembl Show fit	ATPase family, AAA domain containing 2B
chr6_+_2216623 Show fit	0.01	ENSRNOT00000008045	Rmdn2 Links NCBI RGD Ensembl Show fit	regulator of microtubule dynamics 2
chr10_-_85435016 Show fit	0.01	ENSRNOT00000079921	4933428G20Rik Links NCBI RGD Ensembl Show fit	RIKEN cDNA 4933428G20 gene
chr7_-_140437467 Show fit	0.01	ENSRNOT00000087181	Fkbp11 Links NCBI RGD Ensembl Show fit	FK506 binding protein 11
chr1_-_134867001 Show fit	0.01	ENSRNOT00000090149	Chd2 Links NCBI RGD Ensembl Show fit	chromodomain helicase DNA binding protein 2
chr3_+_150055749 Show fit	0.01	ENSRNOT00000055335	Actl10 Links NCBI RGD Ensembl Show fit	actin-like 10
chr1_+_177048655 Show fit	0.01	ENSRNOT00000081595	Mical2 Links NCBI RGD Ensembl Show fit	microtubule associated monooxygenase, calponin and LIM domain containing 2
chr10_+_85608544 Show fit	0.01	ENSRNOT00000092122	Mllt6 Links NCBI RGD Ensembl Show fit	MLLT6, PHD finger domain containing
chr8_+_50559126 Show fit	0.01	ENSRNOT00000024918	Apoa5 Links NCBI RGD Ensembl Show fit	apolipoprotein A5
chr5_-_137238354 Show fit	0.01	ENSRNOT00000039235	Szt2 Links NCBI RGD Ensembl Show fit	seizure threshold 2 homolog (mouse)
chr14_-_83219071 Show fit	0.01	ENSRNOT00000085788	Depdc5 Links NCBI RGD Ensembl Show fit	DEP domain containing 5
chr5_-_152473868 Show fit	0.01	ENSRNOT00000022130	Fam110d Links NCBI RGD Ensembl Show fit	family with sequence similarity 110, member D
chr5_-_147691997 Show fit	0.01	ENSRNOT00000011887	Tssk3 Links NCBI RGD Ensembl Show fit	testis-specific serine kinase 3
chr11_+_73936750 Show fit	0.01	ENSRNOT00000002350	Atp13a3 Links NCBI RGD Ensembl Show fit	ATPase 13A3
chr5_+_154522119 Show fit	0.01	ENSRNOT00000072618	E2f2 Links NCBI RGD Ensembl Show fit	E2F transcription factor 2
chr4_+_57715946 Show fit	0.01	ENSRNOT00000079059 ENSRNOT00000034429	Klhdc10 Links NCBI RGD Ensembl Show fit	kelch domain containing 10
chr15_+_34270648 Show fit	0.01	ENSRNOT00000026333	Rnf31 Links NCBI RGD Ensembl Show fit	ring finger protein 31
chr10_+_84979717 Show fit	0.01	ENSRNOT00000065555	Mrpl10 Links NCBI RGD Ensembl Show fit	mitochondrial ribosomal protein L10
chr3_+_155297566 Show fit	0.01	ENSRNOT00000021435 ENSRNOT00000084866	Dhx35 Links NCBI RGD Ensembl Show fit	DEAH-box helicase 35
chr7_-_142180794 Show fit	0.01	ENSRNOT00000037447	Tfcp2 Links NCBI RGD Ensembl Show fit	transcription factor CP2
chr5_+_14415606 Show fit	0.01	ENSRNOT00000089273	Rgs20 Links NCBI RGD Ensembl Show fit	regulator of G-protein signaling 20
chr11_-_4332255 Show fit	0.01	ENSRNOT00000087133	Cadm2 Links NCBI RGD Ensembl Show fit	cell adhesion molecule 2
chr1_+_84067938 Show fit	0.01	ENSRNOT00000057213	Numbl Links NCBI RGD Ensembl Show fit	NUMB-like, endocytic adaptor protein
chr14_+_84417320 Show fit	0.01	ENSRNOT00000008788	Tbc1d10a Links NCBI RGD Ensembl Show fit	TBC1 domain family, member 10a
chr14_-_83219464 Show fit	0.01	ENSRNOT00000067694	Depdc5 Links NCBI RGD Ensembl Show fit	DEP domain containing 5
chr1_-_59347472 Show fit	0.01	ENSRNOT00000017718	Lnpep Links NCBI RGD Ensembl Show fit	leucyl and cystinyl aminopeptidase
chr18_+_30574627 Show fit	0.01	ENSRNOT00000060484	Pcdhb19 Links NCBI RGD Ensembl Show fit	protocadherin beta 19
chr20_+_3827086 Show fit	0.01	ENSRNOT00000081588	Rxrb Links NCBI RGD Ensembl Show fit	retinoid X receptor beta
chr1_-_265798167 Show fit	0.01	ENSRNOT00000079483	Ldb1 Links NCBI RGD Ensembl Show fit	LIM domain binding 1
chr4_+_113948514 Show fit	0.01	ENSRNOT00000011521	LOC103692171 Links NCBI RGD Ensembl Show fit	mannosyl-oligosaccharide glucosidase
chr1_+_72425707 Show fit	0.00	ENSRNOT00000058956	Sbk2 Links NCBI RGD Ensembl Show fit	SH3 domain binding kinase family, member 2
chr19_-_27535792 Show fit	0.00	ENSRNOT00000024040	Olr1666 Links NCBI RGD Ensembl Show fit	olfactory receptor 1666
chr9_+_88494676 Show fit	0.00	ENSRNOT00000089451	LOC102556337 Links NCBI RGD Ensembl Show fit	mitochondrial fission factor-like
chr6_-_122721496 Show fit	0.00	ENSRNOT00000079697	Ptpn21 Links NCBI RGD Ensembl Show fit	protein tyrosine phosphatase, non-receptor type 21
chr2_+_229196616 Show fit	0.00	ENSRNOT00000012773	Ndst4 Links NCBI RGD Ensembl Show fit	N-deacetylase and N-sulfotransferase 4
chr5_-_126911520 Show fit	0.00	ENSRNOT00000091521	Dio1 Links NCBI RGD Ensembl Show fit	deiodinase, iodothyronine, type I
chr16_-_69242028 Show fit	0.00	ENSRNOT00000019002	Zfp703 Links NCBI RGD Ensembl Show fit	zinc finger protein 703
chr10_-_102423084 Show fit	0.00	ENSRNOT00000065145	Sdk2 Links NCBI RGD Ensembl Show fit	sidekick cell adhesion molecule 2
chrX_-_119162518 Show fit	0.00	ENSRNOT00000073176	LOC103694506 Links NCBI RGD Ensembl Show fit	ubiquitin-conjugating enzyme E2 W
chr16_+_23553647 Show fit	0.00	ENSRNOT00000041994	Psd3 Links NCBI RGD Ensembl Show fit	pleckstrin and Sec7 domain containing 3
chr12_+_51878153 Show fit	0.00	ENSRNOT00000056798	Hscb Links NCBI RGD Ensembl Show fit	HscB mitochondrial iron-sulfur cluster co-chaperone
chr15_-_86142672 Show fit	0.00	ENSRNOT00000057830	Commd6 Links NCBI RGD Ensembl Show fit	COMM domain containing 6
chr3_-_13896838 Show fit	0.00	ENSRNOT00000025399	Fbxw2 Links NCBI RGD Ensembl Show fit	F-box and WD repeat domain containing 2
chr5_-_76039760 Show fit	0.00	ENSRNOT00000019959	RGD1306148 Links NCBI RGD Ensembl Show fit	similar to KIAA0368

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Gene overrepresentation in biological process category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.1	GO:0021917	pancreatic A cell development(GO:0003322) forebrain-midbrain boundary formation(GO:0021905) somatic motor neuron fate commitment(GO:0021917) regulation of transcription from RNA polymerase II promoter involved in somatic motor neuron fate commitment(GO:0021918) sensory neuron migration(GO:1904937)
0.0	0.0	GO:0048319	axial mesoderm morphogenesis(GO:0048319)
0.0	0.1	GO:1901491	negative regulation of lymphangiogenesis(GO:1901491)
0.0	0.0	GO:0033132	negative regulation of glucokinase activity(GO:0033132) negative regulation of hexokinase activity(GO:1903300)
0.0	0.0	GO:0001828	inner cell mass cellular morphogenesis(GO:0001828)

Gene overrepresentation in cellular component category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.1	GO:0000839	Hrd1p ubiquitin ligase ERAD-L complex(GO:0000839)
0.0	0.0	GO:0036117	hyaluranon cable(GO:0036117)

Gene overrepresentation in molecular function category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.1	GO:0004886	9-cis retinoic acid receptor activity(GO:0004886)