ISMARA results: Scrt2

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GSE49485: Hypoxia transcriptome sequencing of rat brain.

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Results for Scrt2

Z-value: 0.42

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Transcription factors associated with Scrt2

Gene Symbol	Gene ID	Gene Info
Scrt2 NCBI RGD Ensembl	ENSRNOG00000005148	scratch family transcriptional repressor 2

Activity-expression correlation:

Gene	Promoter	Pearson corr. coef.	P-value	Plot
Scrt2	rn6_v1_chr3_+_147585947_147585947	-0.26	6.7e-01	Click!

Activity profile of Scrt2 motif

Sorted Z-values of Scrt2 motif

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Promoter	Log-likelihood	Transcript	Gene	Gene Info
chr8_+_49676540 Show fit	0.18	ENSRNOT00000022032 ENSRNOT00000082205	Fxyd6 NCBI RGD Ensembl Show fit	FXYD domain-containing ion transport regulator 6
chr1_+_53220397 Show fit	0.13	ENSRNOT00000089989	AABR07001573.1 NCBI RGD Ensembl Show fit
chr16_-_19942343 Show fit	0.12	ENSRNOT00000087162 ENSRNOT00000091906	Bst2 NCBI RGD Ensembl Show fit	bone marrow stromal cell antigen 2
chr1_-_15301998 Show fit	0.12	ENSRNOT00000016400	Slc35d3 NCBI RGD Ensembl Show fit	solute carrier family 35, member D3
chr1_+_78820262 Show fit	0.11	ENSRNOT00000022441	Gng8 NCBI RGD Ensembl Show fit	G protein subunit gamma 8
chr2_+_121165137 Show fit	0.09	ENSRNOT00000016236	Sox2 NCBI RGD Ensembl Show fit	SRY box 2
chr20_-_47306318 Show fit	0.09	ENSRNOT00000075151	Nr2e1 NCBI RGD Ensembl Show fit	nuclear receptor subfamily 2, group E, member 1
chr15_+_67555835 Show fit	0.09	ENSRNOT00000045882	Pcdh17 NCBI RGD Ensembl Show fit	protocadherin 17
chr3_+_100768637 Show fit	0.09	ENSRNOT00000083542	Bdnf NCBI RGD Ensembl Show fit	brain-derived neurotrophic factor
chr12_+_2534212 Show fit	0.08	ENSRNOT00000001399	Ctxn1 NCBI RGD Ensembl Show fit	cortexin 1

Showing 1 to 10 of 100 entries

Network of associatons between targets according to the STRING database.

First level regulatory network of Scrt2

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

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Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.1	GO:0002731	negative regulation of dendritic cell cytokine production(GO:0002731) regulation of intracellular transport of viral material(GO:1901252)
0.0	0.1	GO:0019236	response to pheromone(GO:0019236)
0.0	0.1	GO:0071698	olfactory placode formation(GO:0030910) olfactory placode development(GO:0071698) olfactory placode morphogenesis(GO:0071699)
0.0	0.1	GO:1903401	L-lysine transmembrane transport(GO:1903401)
0.0	0.1	GO:0010643	cell communication by chemical coupling(GO:0010643)
0.0	0.1	GO:0010499	proteasomal ubiquitin-independent protein catabolic process(GO:0010499)
0.0	0.1	GO:0060164	regulation of timing of neuron differentiation(GO:0060164)
0.0	0.1	GO:0007412	axon target recognition(GO:0007412)
0.0	0.1	GO:0070863	positive regulation of protein exit from endoplasmic reticulum(GO:0070863)
0.0	0.1	GO:0032264	IMP salvage(GO:0032264)

Showing 1 to 10 of 12 entries

Gene overrepresentation in molecular function category:

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Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.1	GO:0016403	dimethylargininase activity(GO:0016403)
0.0	0.1	GO:0015189	L-lysine transmembrane transporter activity(GO:0015189)
0.0	0.1	GO:0003876	AMP deaminase activity(GO:0003876) adenosine-phosphate deaminase activity(GO:0047623)
0.0	0.1	GO:0019002	GMP binding(GO:0019002)
0.0	0.1	GO:0031694	alpha-2A adrenergic receptor binding(GO:0031694)
0.0	0.1	GO:1903763	gap junction channel activity involved in cell communication by electrical coupling(GO:1903763)
0.0	0.1	GO:0005169	neurotrophin TRKB receptor binding(GO:0005169)
0.0	0.1	GO:0008191	metalloendopeptidase inhibitor activity(GO:0008191)
0.0	0.0	GO:0001011	transcription factor activity, sequence-specific DNA binding, RNA polymerase recruiting(GO:0001011) transcription factor activity, TFIIB-class binding(GO:0001087)
0.0	0.0	GO:0000403	Y-form DNA binding(GO:0000403)

Showing 1 to 10 of 10 entries