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GSE49485: Hypoxia transcriptome sequencing of rat brain.

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Results for Stat1

Z-value: 0.36

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Transcription factors associated with Stat1

Gene Symbol Gene ID Gene Info
ENSRNOG00000014079 signal transducer and activator of transcription 1

Activity-expression correlation:

GenePromoterPearson corr. coef.P-valuePlot
Stat1rn6_v1_chr9_-_54484533_54484533-0.731.6e-01Click!

Activity profile of Stat1 motif

Sorted Z-values of Stat1 motif

Promoter Log-likelihood Transcript Gene Gene Info
chr19_-_37528011 0.27 ENSRNOT00000059628
agouti related neuropeptide
chr20_-_3793985 0.20 ENSRNOT00000049540
ENSRNOT00000086293
RT1 class I, locus CE16
chr7_-_3342491 0.17 ENSRNOT00000081756
retinol dehydrogenase 5
chr2_+_145174876 0.15 ENSRNOT00000040631
mab-21 like 1
chr9_+_15166118 0.10 ENSRNOT00000020432
MyoD family inhibitor
chr5_+_29538380 0.10 ENSRNOT00000010845
calbindin 1
chr10_+_84167331 0.09 ENSRNOT00000010965
homeo box B4
chr7_+_72924799 0.07 ENSRNOT00000008969
lysosomal protein transmembrane 4 beta
chr5_+_139597731 0.07 ENSRNOT00000072427
Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 4
chr1_+_247519939 0.07 ENSRNOT00000034421
CD274 molecule
chr2_+_114386019 0.06 ENSRNOT00000082148

chr1_-_81152384 0.06 ENSRNOT00000026263
ENSRNOT00000077305
zinc finger protein 94
chr4_-_123494742 0.05 ENSRNOT00000073268
solute carrier family 41, member 3
chr7_-_15163866 0.05 ENSRNOT00000042638
zinc finger protein 870
chr6_+_108285822 0.05 ENSRNOT00000015889
visual system homeobox 2
chr1_-_81412251 0.05 ENSRNOT00000026946
phospholipase A2 inhibitor and LY6/PLAUR domain containing
chr7_-_94563001 0.04 ENSRNOT00000051139
ENSRNOT00000005561
ectonucleotide pyrophosphatase/phosphodiesterase 2
chr8_-_116349896 0.04 ENSRNOT00000087306
leucine-rich single-pass membrane protein 2
chr8_-_36764422 0.04 ENSRNOT00000017330
HYLS1, centriolar and ciliogenesis associated
chr1_-_98493978 0.04 ENSRNOT00000023942
natural killer cell granule protein 7
chr3_+_95715193 0.04 ENSRNOT00000089525
paired box 6
chr1_+_87790104 0.04 ENSRNOT00000074580
zinc finger protein 383-like
chr7_-_122644054 0.04 ENSRNOT00000025941
DnaJ heat shock protein family (Hsp40) member B7
chr11_+_80255790 0.04 ENSRNOT00000002522
B-cell CLL/lymphoma 6
chr3_-_160139947 0.03 ENSRNOT00000014151
adenosine deaminase
chrX_+_13441558 0.03 ENSRNOT00000030170
similar to Ferritin light chain (Ferritin L subunit)
chr7_-_140090922 0.03 ENSRNOT00000014456
lactalbumin, alpha
chr2_+_225827504 0.03 ENSRNOT00000018343
glutamate cysteine ligase, modifier subunit
chr8_-_130429132 0.03 ENSRNOT00000026261
hedgehog acyltransferase-like
chr7_-_137856485 0.03 ENSRNOT00000007003
similar to splicing factor, arginine/serine-rich 2, interacting protein
chr13_-_45068077 0.03 ENSRNOT00000004969
minichromosome maintenance complex component 6
chr2_-_165600748 0.03 ENSRNOT00000013216
intraflagellar transport 80
chr17_-_15467320 0.03 ENSRNOT00000072490
ENSRNOT00000093561
osteoglycin
chr7_+_2718700 0.03 ENSRNOT00000050792
PAN2 poly(A) specific ribonuclease subunit
chr1_-_167093560 0.03 ENSRNOT00000027301
interleukin 18 binding protein
chr14_-_86387606 0.03 ENSRNOT00000089384
ENSRNOT00000006642
DEAD-box helicase 56
chr3_-_112084144 0.03 ENSRNOT00000010959
phospholipase A2, group IVF
chr10_+_39109522 0.02 ENSRNOT00000010968
interferon regulatory factor 1
chr18_+_86299463 0.02 ENSRNOT00000058152
CD226 molecule
chr17_+_18358712 0.02 ENSRNOT00000001979
nucleoporin 153
chr1_-_78180216 0.02 ENSRNOT00000071576
complement component 5a receptor 2
chr19_-_43215281 0.02 ENSRNOT00000025052
alanyl-tRNA synthetase
chr11_+_31806618 0.02 ENSRNOT00000043410
ENSRNOT00000002769
Son DNA binding protein
chr19_-_43215077 0.02 ENSRNOT00000082151
alanyl-tRNA synthetase
chr1_-_189181901 0.02 ENSRNOT00000092022
glycoprotein 2
chr2_+_30685840 0.02 ENSRNOT00000031385
coiled-coil domain containing 125
chr7_-_145174771 0.02 ENSRNOT00000055270
glycosylation dependent cell adhesion molecule 1
chr4_+_109477920 0.02 ENSRNOT00000008468
regenerating islet-derived 3 alpha
chrX_+_156854594 0.02 ENSRNOT00000083442
renin binding protein
chr15_+_33004133 0.02 ENSRNOT00000013246
OXA1L, mitochondrial inner membrane protein
chr15_+_34282936 0.02 ENSRNOT00000026364
interferon regulatory factor 9
chr4_-_17594598 0.02 ENSRNOT00000008936
semaphorin 3E
chr5_+_101526551 0.02 ENSRNOT00000015254
small nuclear RNA activating complex, polypeptide 3
chr3_-_111873974 0.02 ENSRNOT00000077546

chr7_+_35125424 0.02 ENSRNOT00000085978
ENSRNOT00000010117
NADH:ubiquinone oxidoreductase subunit A12
chrX_-_123092217 0.02 ENSRNOT00000039710
predicted gene 14569
chr10_+_17542374 0.02 ENSRNOT00000064079
F-box and WD repeat domain containing 11
chr18_+_36829062 0.02 ENSRNOT00000025467
ENSRNOT00000086979
transcription elongation regulator 1
chr4_+_118243132 0.02 ENSRNOT00000023654
similar to Hypothetical protein MGC25529
chr2_+_53109684 0.02 ENSRNOT00000086590
selenoprotein P
chr17_+_47721977 0.02 ENSRNOT00000080800
amphiphysin-like
chr4_+_9981958 0.02 ENSRNOT00000015322
N-acyl phosphatidylethanolamine phospholipase D
chr15_+_34452116 0.02 ENSRNOT00000027647
leukotriene B4 receptor
chr1_+_154131926 0.02 ENSRNOT00000035257
ferritin light chain 1-like
chr1_+_214123044 0.02 ENSRNOT00000021925
phosphatidylserine synthase 2
chr6_+_109939345 0.02 ENSRNOT00000013560
intraflagellar transport 43
chr9_-_61134963 0.01 ENSRNOT00000017967
post-GPI attachment to proteins 1
chr10_-_56506446 0.01 ENSRNOT00000021357
ArfGAP with coiled-coil, ankyrin repeat and PH domains 1
chr8_-_48850671 0.01 ENSRNOT00000016580
C-X-C motif chemokine receptor 5
chr15_-_34392066 0.01 ENSRNOT00000027315
transglutaminase 1
chr10_-_59883839 0.01 ENSRNOT00000093579
aspartoacylase
chr1_-_164441167 0.01 ENSRNOT00000023935
ribosomal protein S3
chrX_+_77065397 0.01 ENSRNOT00000090007
cytochrome c oxidase subunit 7B
chr18_+_14471213 0.01 ENSRNOT00000045224
dystrobrevin, alpha
chr5_-_56567320 0.01 ENSRNOT00000066081
TOP1 binding arginine/serine rich protein
chr19_+_37282018 0.01 ENSRNOT00000021723
transmembrane protein 208
chr7_-_83348487 0.01 ENSRNOT00000006685
NudC domain containing 1
chr8_-_62332115 0.01 ENSRNOT00000025783
mannose phosphate isomerase (mapped)
chrX_-_25590048 0.01 ENSRNOT00000004873
midline 1
chr8_+_21890319 0.01 ENSRNOT00000027949
hypothetical protein LOC500956
chr10_+_14240219 0.01 ENSRNOT00000020233
insulin-like growth factor binding protein, acid labile subunit
chr13_+_90184569 0.01 ENSRNOT00000082393
signaling lymphocytic activation molecule family member 1
chr5_-_169017295 0.01 ENSRNOT00000067481
calmodulin binding transcription activator 1
chr5_+_164951789 0.01 ENSRNOT00000055658
ENSRNOT00000012193
MAD2 mitotic arrest deficient-like 2 (yeast)
chr19_+_15294248 0.01 ENSRNOT00000024622
carboxylesterase 1F
chr14_+_17195014 0.01 ENSRNOT00000031667
C-X-C motif chemokine ligand 11
chr14_-_23604834 0.01 ENSRNOT00000002760
signal transducing adaptor family member 1
chr1_+_226947105 0.01 ENSRNOT00000028373
pre-mRNA processing factor 19
chr1_-_213921208 0.01 ENSRNOT00000044393
anoctamin 9
chr11_-_32088002 0.01 ENSRNOT00000002732
ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit
chr7_+_83348694 0.01 ENSRNOT00000006402
ENY2, transcription and export complex 2 subunit
chr2_+_93518806 0.01 ENSRNOT00000050987
sorting nexin 16
chr11_+_68105369 0.01 ENSRNOT00000046888
poly (ADP-ribose) polymerase family, member 14
chrX_-_143453612 0.01 ENSRNOT00000051319
ATPase phospholipid transporting 11C
chr1_-_165606375 0.01 ENSRNOT00000024290
mitochondrial ribosomal protein L48
chr2_-_189880743 0.01 ENSRNOT00000018830
SNAP-associated protein
chr19_-_37281933 0.01 ENSRNOT00000059663
leucine rich repeat containing 29
chr18_+_57654290 0.01 ENSRNOT00000025892
5-hydroxytryptamine receptor 4
chr3_+_176985900 0.01 ENSRNOT00000020210
abhydrolase domain containing 16B
chr8_-_77992621 0.01 ENSRNOT00000085843
myocardial zonula adherens protein
chr8_+_49621568 0.01 ENSRNOT00000021949
transmembrane protease, serine 13
chr1_-_193700673 0.01 ENSRNOT00000071314
polyadenylate-binding protein-interacting protein 2-like 1
chr14_-_42560174 0.01 ENSRNOT00000003128
transmembrane protein 33
chr13_-_47397890 0.01 ENSRNOT00000005505
complement component 4 binding protein, beta
chrX_-_38468360 0.01 ENSRNOT00000045285
MAP7 domain containing 2
chr1_-_7480825 0.01 ENSRNOT00000048754
phosphatase and actin regulator 2
chr10_-_86645529 0.01 ENSRNOT00000011947
mediator complex subunit 24
chr2_+_86996497 0.00 ENSRNOT00000042058
zinc finger protein 455
chr12_-_30106889 0.00 ENSRNOT00000065868
ENSRNOT00000001200
tyrosylprotein sulfotransferase 1
chrX_+_9436707 0.00 ENSRNOT00000004187
calcium/calmodulin dependent serine protein kinase
chr3_+_161519743 0.00 ENSRNOT00000055148
CD40 molecule
chrX_+_112270986 0.00 ENSRNOT00000091441
ENSRNOT00000082652
V-set and immunoglobulin domain containing 1
chr11_-_82938357 0.00 ENSRNOT00000035945
mitogen-activated protein kinase kinase kinase 13
chr19_-_10884047 0.00 ENSRNOT00000088196
ENSRNOT00000063791
copine 2
chr10_-_95262024 0.00 ENSRNOT00000066487
bromodomain PHD finger transcription factor
chr7_-_2825498 0.00 ENSRNOT00000086656
ENSRNOT00000031362
nucleic acid binding protein 2
chr10_+_69412017 0.00 ENSRNOT00000009448
C-C motif chemokine ligand 2
chr7_+_1206648 0.00 ENSRNOT00000073689
protein S (alpha)
chr15_-_103927592 0.00 ENSRNOT00000031036
ENSRNOT00000013366
ATP binding cassette subfamily C member 4
chr20_+_45458558 0.00 ENSRNOT00000000713
cyclin-dependent kinase 19
chr1_+_157403595 0.00 ENSRNOT00000012781
coiled-coil domain containing 90B
chr10_-_95431312 0.00 ENSRNOT00000085552

chr2_+_243820661 0.00 ENSRNOT00000090526
eukaryotic translation initiation factor 4E
chr7_-_102298522 0.00 ENSRNOT00000006273
alpha-1-B glycoprotein
chr9_+_10952374 0.00 ENSRNOT00000074993
leucine-rich alpha-2-glycoprotein 1
chrX_+_159703578 0.00 ENSRNOT00000001162
CD40 ligand
chr3_-_72171078 0.00 ENSRNOT00000009817
serpin family G member 1
chr2_+_199162745 0.00 ENSRNOT00000023488
gap junction protein, alpha 5

Network of associatons between targets according to the STRING database.

First level regulatory network of Stat1

PNG image of the network

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 0.3 GO:2000253 positive regulation of feeding behavior(GO:2000253)
0.0 0.1 GO:0035502 metanephric part of ureteric bud development(GO:0035502)
0.0 0.0 GO:1903165 response to polycyclic arene(GO:1903165)
0.0 0.1 GO:2001181 positive regulation of interleukin-10 secretion(GO:2001181)
0.0 0.0 GO:0003322 pancreatic A cell development(GO:0003322) forebrain-midbrain boundary formation(GO:0021905) somatic motor neuron fate commitment(GO:0021917) regulation of transcription from RNA polymerase II promoter involved in somatic motor neuron fate commitment(GO:0021918) sensory neuron migration(GO:1904937)
0.0 0.1 GO:0048539 bone marrow development(GO:0048539)
0.0 0.0 GO:0032763 regulation of mast cell cytokine production(GO:0032763)
0.0 0.0 GO:0046103 negative regulation of circadian sleep/wake cycle, non-REM sleep(GO:0042323) inosine biosynthetic process(GO:0046103) negative regulation of mucus secretion(GO:0070256)
0.0 0.0 GO:0006419 alanyl-tRNA aminoacylation(GO:0006419)

Gene overrepresentation in cellular component category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 0.3 GO:0005796 Golgi lumen(GO:0005796)

Gene overrepresentation in molecular function category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 0.1 GO:0099510 calcium ion binding involved in regulation of cytosolic calcium ion concentration(GO:0099510)
0.0 0.0 GO:0004528 phosphodiesterase I activity(GO:0004528)
0.0 0.0 GO:0004813 alanine-tRNA ligase activity(GO:0004813)
0.0 0.2 GO:0004745 retinol dehydrogenase activity(GO:0004745)

Gene overrepresentation in curated gene sets: canonical pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 0.3 PID SYNDECAN 3 PATHWAY Syndecan-3-mediated signaling events