GSE49485: Hypoxia transcriptome sequencing of rat brain.

• Motif significance table
• Sample table
• Mean activities
• All promoters sorted by FOV

• Activity table
• Activity delta table
• Regulatory interactions
• Motifs sorted by significance
• Expression table
• Download the whole report

Gene Symbol	Gene ID	Gene Info
Gli1 Links NCBI RGD Ensembl	ENSRNOG00000025120	GLI family zinc finger 1

Gene	Promoter	Pearson corr. coef.	P-value	Plot
Gli1	rn6_v1_chr7_-_70630338_70630338	-0.35	5.6e-01	Click!

Promoter	Log-likelihood	Transcript	Gene	Gene Info
chr1_-_216080287 Show fit	0.16	ENSRNOT00000027682	Th Links NCBI RGD Ensembl Show fit	tyrosine hydroxylase
chr10_-_90312386 Show fit	0.12	ENSRNOT00000028445	Slc4a1 Links NCBI RGD Ensembl Show fit	solute carrier family 4 member 1
chr6_-_27190126 Show fit	0.11	ENSRNOT00000068412 ENSRNOT00000013107	Kcnk3 Links NCBI RGD Ensembl Show fit	potassium two pore domain channel subfamily K member 3
chr6_+_137997335 Show fit	0.08	ENSRNOT00000006872	Tmem121 Links NCBI RGD Ensembl Show fit	transmembrane protein 121
chr16_-_82439441 Show fit	0.06	ENSRNOT00000040315	AABR07026539.1 Links NCBI RGD Ensembl Show fit
chr1_-_80221417 Show fit	0.06	ENSRNOT00000072149	Fosb Links NCBI RGD Ensembl Show fit	FosB proto-oncogene, AP-1 transcription factor subunit
chr3_+_154043873 Show fit	0.06	ENSRNOT00000072502 ENSRNOT00000034166	Nnat Links NCBI RGD Ensembl Show fit	neuronatin
chr12_+_47074200 Show fit	0.05	ENSRNOT00000014910	Dynll1 Links NCBI RGD Ensembl Show fit	dynein light chain LC8-type 1
chr18_-_28454756 Show fit	0.05	ENSRNOT00000040091	Spata24 Links NCBI RGD Ensembl Show fit	spermatogenesis associated 24
chr4_+_24617008 Show fit	0.05	ENSRNOT00000086607	Ewsr1 Links NCBI RGD Ensembl Show fit	EWS RNA-binding protein 1
chr1_-_80689171 Show fit	0.04	ENSRNOT00000045574	Bcam Links NCBI RGD Ensembl Show fit	basal cell adhesion molecule (Lutheran blood group)
chr4_+_55715744 Show fit	0.04	ENSRNOT00000010429	Arf5 Links NCBI RGD Ensembl Show fit	ADP-ribosylation factor 5
chr2_-_46544457 Show fit	0.04	ENSRNOT00000015680	Fst Links NCBI RGD Ensembl Show fit	follistatin
chr7_-_12326392 Show fit	0.04	ENSRNOT00000039728	Ndufs7 Links NCBI RGD Ensembl Show fit	NADH dehydrogenase (ubiquinone) Fe-S protein 7
chr19_-_37938857 Show fit	0.04	ENSRNOT00000026730	Slc12a4 Links NCBI RGD Ensembl Show fit	solute carrier family 12 member 4
chr3_+_148579920 Show fit	0.04	ENSRNOT00000012432	Hck Links NCBI RGD Ensembl Show fit	HCK proto-oncogene, Src family tyrosine kinase
chr5_+_131380297 Show fit	0.04	ENSRNOT00000010548	Agbl4 Links NCBI RGD Ensembl Show fit	ATP/GTP binding protein-like 4
chr5_-_17061361 Show fit	0.04	ENSRNOT00000089318	Penk Links NCBI RGD Ensembl Show fit	proenkephalin
chr1_-_84812486 Show fit	0.04	ENSRNOT00000078369	AABR07002779.1 Links NCBI RGD Ensembl Show fit
chr5_-_60871705 Show fit	0.04	ENSRNOT00000016582	Exosc3 Links NCBI RGD Ensembl Show fit	exosome component 3
chr10_+_38889370 Show fit	0.03	ENSRNOT00000091236	Sept8 Links NCBI RGD Ensembl Show fit	septin 8
chr5_+_63781801 Show fit	0.03	ENSRNOT00000008302	Nr4a3 Links NCBI RGD Ensembl Show fit	nuclear receptor subfamily 4, group A, member 3
chr7_-_2712723 Show fit	0.03	ENSRNOT00000004363	Il23a Links NCBI RGD Ensembl Show fit	interleukin 23 subunit alpha
chr4_-_170932618 Show fit	0.03	ENSRNOT00000007779	Arhgdib Links NCBI RGD Ensembl Show fit	Rho GDP dissociation inhibitor beta
chr19_+_46761570 Show fit	0.03	ENSRNOT00000058779	Wwox Links NCBI RGD Ensembl Show fit	WW domain-containing oxidoreductase
chr7_-_96464049 Show fit	0.02	ENSRNOT00000006517	Has2 Links NCBI RGD Ensembl Show fit	hyaluronan synthase 2
chr7_+_121480723 Show fit	0.02	ENSRNOT00000065304	Atf4 Links NCBI RGD Ensembl Show fit	activating transcription factor 4
chr5_+_172273459 Show fit	0.02	ENSRNOT00000017957	Mmel1 Links NCBI RGD Ensembl Show fit	membrane metallo-endopeptidase-like 1
chr10_+_86860685 Show fit	0.02	ENSRNOT00000084644	Rara Links NCBI RGD Ensembl Show fit	retinoic acid receptor, alpha
chr10_+_59566223 Show fit	0.02	ENSRNOT00000024068 ENSRNOT00000088245	P2rx1 Links NCBI RGD Ensembl Show fit	purinergic receptor P2X 1
chr4_-_117631716 Show fit	0.02	ENSRNOT00000057475	LOC103690006 Links NCBI RGD Ensembl Show fit	RNA/RNP complex-1-interacting phosphatase
chr8_-_55177818 Show fit	0.02	ENSRNOT00000013960	Hspb2 Links NCBI RGD Ensembl Show fit	heat shock protein family B (small) member 2
chr1_+_207508414 Show fit	0.02	ENSRNOT00000054896	Nps Links NCBI RGD Ensembl Show fit	neuropeptide S
chr18_+_58270410 Show fit	0.02	ENSRNOT00000067554	Apcdd1 Links NCBI RGD Ensembl Show fit	APC down-regulated 1
chr10_+_65448950 Show fit	0.02	ENSRNOT00000082348 ENSRNOT00000037016	Rab34 Links NCBI RGD Ensembl Show fit	RAB34, member RAS oncogene family
chr16_+_7212488 Show fit	0.02	ENSRNOT00000024840	Nt5dc2 Links NCBI RGD Ensembl Show fit	5'-nucleotidase domain containing 2
chr3_-_11102515 Show fit	0.02	ENSRNOT00000035580	Fam78a Links NCBI RGD Ensembl Show fit	family with sequence similarity 78, member A
chr18_+_57011575 Show fit	0.02	ENSRNOT00000026679	Il17b Links NCBI RGD Ensembl Show fit	interleukin 17B
chrX_-_72370044 Show fit	0.02	ENSRNOT00000004224	Hdac8 Links NCBI RGD Ensembl Show fit	histone deacetylase 8
chr16_+_54332660 Show fit	0.02	ENSRNOT00000037685	Mtus1 Links NCBI RGD Ensembl Show fit	microtubule associated tumor suppressor 1
chr1_+_84304228 Show fit	0.02	ENSRNOT00000024771	Prx Links NCBI RGD Ensembl Show fit	periaxin
chr5_+_135962911 Show fit	0.02	ENSRNOT00000087353	Ptch2 Links NCBI RGD Ensembl Show fit	patched 2
chr8_+_65686648 Show fit	0.02	ENSRNOT00000017233	Uaca Links NCBI RGD Ensembl Show fit	uveal autoantigen with coiled-coil domains and ankyrin repeats
chr18_-_19275273 Show fit	0.02	ENSRNOT00000041707	LOC102547344 Links NCBI RGD Ensembl Show fit	lateral signaling target protein 2 homolog
chr11_+_47061354 Show fit	0.02	ENSRNOT00000039997	Pcnp Links NCBI RGD Ensembl Show fit	PEST proteolytic signal containing nuclear protein
chr2_+_225645568 Show fit	0.02	ENSRNOT00000017878	Abca4 Links NCBI RGD Ensembl Show fit	ATP binding cassette subfamily A member 4
chr1_-_261986759 Show fit	0.02	ENSRNOT00000021257	Pyroxd2 Links NCBI RGD Ensembl Show fit	pyridine nucleotide-disulphide oxidoreductase domain 2
chr5_+_126164674 Show fit	0.02	ENSRNOT00000009402	Dhcr24 Links NCBI RGD Ensembl Show fit	24-dehydrocholesterol reductase
chr17_-_84614228 Show fit	0.02	ENSRNOT00000043042	AABR07028748.1 Links NCBI RGD Ensembl Show fit
chr3_+_152752091 Show fit	0.01	ENSRNOT00000037177	Dlgap4 Links NCBI RGD Ensembl Show fit	DLG associated protein 4
chrX_-_115426083 Show fit	0.01	ENSRNOT00000014756	AABR07040947.1 Links NCBI RGD Ensembl Show fit
chr3_-_148312791 Show fit	0.01	ENSRNOT00000091419	Bcl2l1 Links NCBI RGD Ensembl Show fit	Bcl2-like 1
chr17_-_1093873 Show fit	0.01	ENSRNOT00000086130	Ptch1 Links NCBI RGD Ensembl Show fit	patched 1
chr10_-_108321644 Show fit	0.01	ENSRNOT00000075171	Tbc1d16 Links NCBI RGD Ensembl Show fit	TBC1 domain family, member 16
chr2_+_198040536 Show fit	0.01	ENSRNOT00000028744	Anp32e Links NCBI RGD Ensembl Show fit	acidic nuclear phosphoprotein 32 family member E
chr3_-_147481073 Show fit	0.01	ENSRNOT00000084722	Fam110a Links NCBI RGD Ensembl Show fit	family with sequence similarity 110, member A
chr1_+_192025710 Show fit	0.01	ENSRNOT00000077457	Ubfd1 Links NCBI RGD Ensembl Show fit	ubiquitin family domain containing 1
chr10_-_88122233 Show fit	0.01	ENSRNOT00000083895 ENSRNOT00000005285	Krt14 Links NCBI RGD Ensembl Show fit	keratin 14
chr7_+_14643704 Show fit	0.01	ENSRNOT00000044642	AABR07055875.1 Links NCBI RGD Ensembl Show fit
chr4_+_61924013 Show fit	0.01	ENSRNOT00000090717	Bpgm Links NCBI RGD Ensembl Show fit	bisphosphoglycerate mutase
chrX_+_15049462 Show fit	0.01	ENSRNOT00000007015	Ebp Links NCBI RGD Ensembl Show fit	emopamil binding protein (sterol isomerase)
chr5_+_140923914 Show fit	0.01	ENSRNOT00000020929	Heyl Links NCBI RGD Ensembl Show fit	hes-related family bHLH transcription factor with YRPW motif-like
chr9_-_10734073 Show fit	0.01	ENSRNOT00000071199	Kdm4b Links NCBI RGD Ensembl Show fit	lysine demethylase 4B
chr2_+_12102487 Show fit	0.01	ENSRNOT00000089209 ENSRNOT00000072155	LOC100912538 Links NCBI RGD Ensembl Show fit	centrin-3-like
chr10_-_13580821 Show fit	0.01	ENSRNOT00000009735	Ntn3 Links NCBI RGD Ensembl Show fit	netrin 3
chr1_-_210739600 Show fit	0.01	ENSRNOT00000031734	Tcerg1l Links NCBI RGD Ensembl Show fit	transcription elongation regulator 1-like
chr1_+_144070754 Show fit	0.01	ENSRNOT00000079989	Sh3gl3 Links NCBI RGD Ensembl Show fit	SH3 domain-containing GRB2-like 3
chr10_+_86669233 Show fit	0.01	ENSRNOT00000012340	Thra Links NCBI RGD Ensembl Show fit	thyroid hormone receptor alpha
chr5_+_126698582 Show fit	0.01	ENSRNOT00000012427	Cdcp2 Links NCBI RGD Ensembl Show fit	CUB domain containing protein 2
chr1_-_220467159 Show fit	0.01	ENSRNOT00000075365	Tmem151a Links NCBI RGD Ensembl Show fit	transmembrane protein 151A
chr1_+_113034227 Show fit	0.01	ENSRNOT00000081831 ENSRNOT00000077877 ENSRNOT00000077594	Gabrb3 Links NCBI RGD Ensembl Show fit	gamma-aminobutyric acid type A receptor beta 3 subunit
chr20_-_10968432 Show fit	0.01	ENSRNOT00000001593	Cstb Links NCBI RGD Ensembl Show fit	cystatin B
chr15_+_34155504 Show fit	0.01	ENSRNOT00000024782	Dhrs4 Links NCBI RGD Ensembl Show fit	dehydrogenase/reductase 4
chr5_+_133620706 Show fit	0.01	ENSRNOT00000053202	Gm12830 Links NCBI RGD Ensembl Show fit	predicted gene 12830
chr1_-_170397191 Show fit	0.01	ENSRNOT00000090181	Apbb1 Links NCBI RGD Ensembl Show fit	amyloid beta precursor protein binding family B member 1
chr5_-_6186329 Show fit	0.01	ENSRNOT00000012610	Sulf1 Links NCBI RGD Ensembl Show fit	sulfatase 1
chr1_+_72636959 Show fit	0.01	ENSRNOT00000023489	Il11 Links NCBI RGD Ensembl Show fit	interleukin 11
chr1_+_192025357 Show fit	0.00	ENSRNOT00000025072	Ubfd1 Links NCBI RGD Ensembl Show fit	ubiquitin family domain containing 1
chr18_+_79406381 Show fit	0.00	ENSRNOT00000022303 ENSRNOT00000058295 ENSRNOT00000058296 ENSRNOT00000022280	Mbp Links NCBI RGD Ensembl Show fit	myelin basic protein
chr10_+_20320878 Show fit	0.00	ENSRNOT00000009714	Slit3 Links NCBI RGD Ensembl Show fit	slit guidance ligand 3
chr8_-_23084879 Show fit	0.00	ENSRNOT00000018874	Zfp653 Links NCBI RGD Ensembl Show fit	zinc finger protein 653
chr5_-_65073012 Show fit	0.00	ENSRNOT00000007957	Grin3a Links NCBI RGD Ensembl Show fit	glutamate ionotropic receptor NMDA type subunit 3A
chr7_+_133089166 Show fit	0.00	ENSRNOT00000085280	AC096792.1 Links NCBI RGD Ensembl Show fit
chr16_+_61758917 Show fit	0.00	ENSRNOT00000084858	Leprotl1 Links NCBI RGD Ensembl Show fit	leptin receptor overlapping transcript-like 1
chr8_-_59239954 Show fit	0.00	ENSRNOT00000016104	Acsbg1 Links NCBI RGD Ensembl Show fit	acyl-CoA synthetase bubblegum family member 1
chr1_-_91855983 Show fit	0.00	ENSRNOT00000017172	Rgs9bp Links NCBI RGD Ensembl Show fit	regulator of G protein signaling 9 binding protein
chr2_+_248715281 Show fit	0.00	ENSRNOT00000089648	Gtf2b Links NCBI RGD Ensembl Show fit	general transcription factor IIB
chr19_+_37330930 Show fit	0.00	ENSRNOT00000022439	Plekhg4 Links NCBI RGD Ensembl Show fit	pleckstrin homology and RhoGEF domain containing G4
chr19_+_53055745 Show fit	0.00	ENSRNOT00000074430	Foxl1 Links NCBI RGD Ensembl Show fit	forkhead box L1
chr7_+_141326950 Show fit	0.00	ENSRNOT00000084075	Asic1 Links NCBI RGD Ensembl Show fit	acid sensing ion channel subunit 1
chr6_+_96871625 Show fit	0.00	ENSRNOT00000012361	Snapc1 Links NCBI RGD Ensembl Show fit	small nuclear RNA activating complex, polypeptide 1
chr3_+_8450612 Show fit	0.00	ENSRNOT00000040457	Odf2 Links NCBI RGD Ensembl Show fit	outer dense fiber of sperm tails 2

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Gene overrepresentation in biological process category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.2	GO:0052314	phytoalexin metabolic process(GO:0052314)
0.0	0.1	GO:0010037	response to carbon dioxide(GO:0010037)
0.0	0.1	GO:1900625	regulation of monocyte aggregation(GO:1900623) positive regulation of monocyte aggregation(GO:1900625)
0.0	0.0	GO:0051867	general adaptation syndrome, behavioral process(GO:0051867)
0.0	0.0	GO:0071031	nuclear mRNA surveillance of mRNA 3'-end processing(GO:0071031) nuclear polyadenylation-dependent tRNA catabolic process(GO:0071038) nuclear retention of pre-mRNA with aberrant 3'-ends at the site of transcription(GO:0071049)
0.0	0.0	GO:0051140	positive regulation of memory T cell differentiation(GO:0043382) regulation of NK T cell proliferation(GO:0051140) positive regulation of NK T cell proliferation(GO:0051142) regulation of T-helper 17 cell lineage commitment(GO:2000328)

Gene overrepresentation in cellular component category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.2	GO:0033162	melanosome membrane(GO:0033162) chitosome(GO:0045009)

Gene overrepresentation in molecular function category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.1	GO:0022841	potassium ion leak channel activity(GO:0022841)
0.0	0.2	GO:0016714	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced pteridine as one donor, and incorporation of one atom of oxygen(GO:0016714)