Project
GSE49485: Hypoxia transcriptome sequencing of rat brain.
Navigation
Downloads
Results for Neurod1
Z-value: 0.72
Motif logo
Transcription factors associated with Neurod1
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| Neurod1 | rn6_v1_chr3_-_66417741_66417741 | 0.77 | 1.3e-01 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| chr4_+_86275717 Show fit | 0.56 |
ENSRNOT00000016414
|
protein phosphatase 1, regulatory subunit 17 |
|
| chr3_-_66417741 Show fit | 0.56 |
ENSRNOT00000007662
|
neuronal differentiation 1 |
|
| chr20_-_5064469 Show fit | 0.41 |
ENSRNOT00000001120
|
lymphocyte antigen 6 complex, locus G6D |
|
| chr9_+_25410669 Show fit | 0.38 |
ENSRNOT00000030912
ENSRNOT00000090920 |
transcription factor AP-2 beta |
|
| chr4_-_482645 Show fit | 0.37 |
ENSRNOT00000062073
ENSRNOT00000071713 |
canopy FGF signaling regulator 1 |
|
| chr10_+_74959285 Show fit | 0.29 |
ENSRNOT00000010296
|
ring finger protein 43 |
|
| chr4_+_6282278 Show fit | 0.29 |
ENSRNOT00000010349
|
lysine methyltransferase 2C |
|
| chr20_-_27083410 Show fit | 0.25 |
ENSRNOT00000000432
|
atonal bHLH transcription factor 7 |
|
| chr5_-_12526962 Show fit | 0.24 |
ENSRNOT00000092104
|
suppression of tumorigenicity 18 |
|
| chr4_+_84854386 Show fit | 0.22 |
ENSRNOT00000013620
|
maturin, neural progenitor differentiation regulator homolog |
Network of associatons between targets according to the STRING database.
First level regulatory network of Neurod1
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 0.6 | GO:0060729 | intestinal epithelial structure maintenance(GO:0060729) |
| 0.1 | 0.4 | GO:0097070 | ductus arteriosus closure(GO:0097070) |
| 0.0 | 0.4 | GO:0095500 | acetylcholine receptor signaling pathway(GO:0095500) signal transduction involved in cellular response to ammonium ion(GO:1903831) response to acetylcholine(GO:1905144) cellular response to acetylcholine(GO:1905145) |
| 0.0 | 0.3 | GO:0061029 | eyelid development in camera-type eye(GO:0061029) |
| 0.0 | 0.3 | GO:0032801 | receptor catabolic process(GO:0032801) |
| 0.1 | 0.2 | GO:0009644 | response to high light intensity(GO:0009644) |
| 0.0 | 0.2 | GO:0014043 | negative regulation of neuron maturation(GO:0014043) |
| 0.0 | 0.2 | GO:1990086 | lens fiber cell apoptotic process(GO:1990086) |
| 0.0 | 0.2 | GO:1900113 | negative regulation of histone H3-K9 trimethylation(GO:1900113) |
| 0.0 | 0.2 | GO:0021554 | optic nerve development(GO:0021554) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 0.3 | GO:0044666 | MLL3/4 complex(GO:0044666) |
| 0.0 | 0.2 | GO:0032593 | insulin-responsive compartment(GO:0032593) |
| 0.0 | 0.1 | GO:0008274 | gamma-tubulin large complex(GO:0000931) gamma-tubulin ring complex(GO:0008274) |
| 0.0 | 0.1 | GO:0044307 | dendritic branch(GO:0044307) |
| 0.0 | 0.1 | GO:0031010 | ISWI-type complex(GO:0031010) |
| 0.0 | 0.1 | GO:0070449 | elongin complex(GO:0070449) |
| 0.0 | 0.0 | GO:1990584 | cardiac Troponin complex(GO:1990584) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 0.9 | GO:0001105 | RNA polymerase II transcription coactivator activity(GO:0001105) |
| 0.1 | 0.6 | GO:0004865 | protein serine/threonine phosphatase inhibitor activity(GO:0004865) |
| 0.0 | 0.4 | GO:0030550 | acetylcholine receptor inhibitor activity(GO:0030550) |
| 0.0 | 0.3 | GO:0042800 | histone methyltransferase activity (H3-K4 specific)(GO:0042800) |
| 0.0 | 0.2 | GO:0032454 | histone demethylase activity (H3-K9 specific)(GO:0032454) |
| 0.0 | 0.1 | GO:0004874 | aryl hydrocarbon receptor activity(GO:0004874) |
| 0.0 | 0.1 | GO:0071936 | coreceptor activity involved in Wnt signaling pathway(GO:0071936) |
| 0.0 | 0.1 | GO:0004614 | phosphoglucomutase activity(GO:0004614) |
| 0.0 | 0.1 | GO:0070644 | vitamin D response element binding(GO:0070644) |
| 0.0 | 0.1 | GO:0004994 | somatostatin receptor activity(GO:0004994) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 0.2 | SA REG CASCADE OF CYCLIN EXPR | Expression of cyclins regulates progression through the cell cycle by activating cyclin-dependent kinases. |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 0.7 | REACTOME REGULATION OF GENE EXPRESSION IN BETA CELLS | Genes involved in Regulation of gene expression in beta cells |
| 0.0 | 0.2 | REACTOME CDC6 ASSOCIATION WITH THE ORC ORIGIN COMPLEX | Genes involved in CDC6 association with the ORC:origin complex |