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GSE49485: Hypoxia transcriptome sequencing of rat brain.

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Results for Myod1

Z-value: 0.37

Motif logo

Transcription factors associated with Myod1

Gene Symbol Gene ID Gene Info
ENSRNOG00000011306 myogenic differentiation 1

Activity-expression correlation:

GenePromoterPearson corr. coef.P-valuePlot
Myod1rn6_v1_chr1_+_102396538_1023965380.177.8e-01Click!

Activity profile of Myod1 motif

Sorted Z-values of Myod1 motif

Promoter Log-likelihood Transcript Gene Gene Info
chr9_+_94425252 0.14 ENSRNOT00000064965
ENSRNOT00000076099
GRB10 interacting GYF protein 2
chr10_+_70262361 0.10 ENSRNOT00000064625
ENSRNOT00000076973
unc-45 myosin chaperone B
chr7_+_130532435 0.10 ENSRNOT00000092672
ENSRNOT00000092535
SH3 and multiple ankyrin repeat domains 3
chr2_-_231521052 0.10 ENSRNOT00000089534
ENSRNOT00000080470
ENSRNOT00000084756
ankyrin 2
chr1_-_88920291 0.09 ENSRNOT00000028306
kin of IRRE like 2 (Drosophila)
chr1_+_241594565 0.09 ENSRNOT00000020123
amyloid beta precursor protein binding family A member 1
chr9_+_111028824 0.09 ENSRNOT00000041418
ENSRNOT00000056457
peptidylglycine alpha-amidating monooxygenase
chr3_-_110556808 0.08 ENSRNOT00000092158
ENSRNOT00000045362
similar to hypothetical protein
chr5_-_58469399 0.08 ENSRNOT00000013213
phosphatidylinositol glycan anchor biosynthesis, class O
chr11_-_88038518 0.08 ENSRNOT00000051991
RIMS binding protein 3
chr8_-_120446455 0.08 ENSRNOT00000085161
ENSRNOT00000042854
ENSRNOT00000037199
cAMP regulated phosphoprotein 21
chr9_+_16749809 0.08 ENSRNOT00000028786
cullin 9
chr10_+_71278650 0.07 ENSRNOT00000092020
synergin, gamma
chr6_+_27328406 0.07 ENSRNOT00000091159
ENSRNOT00000044278
otoferlin
chr1_+_80321585 0.07 ENSRNOT00000022895
creatine kinase, M-type
chr12_+_31530699 0.07 ENSRNOT00000033379
ENSRNOT00000067867
RIMS binding protein 2
chr16_+_46731403 0.07 ENSRNOT00000017624
teneurin transmembrane protein 3
chr12_+_660011 0.07 ENSRNOT00000040830
PDS5 cohesin associated factor B
chr7_+_11383116 0.07 ENSRNOT00000066348
nicotinamide riboside kinase 2
chr20_+_3558827 0.07 ENSRNOT00000088130
discoidin domain receptor tyrosine kinase 1
chr10_+_11393103 0.07 ENSRNOT00000076022
adenylate cyclase 9
chrX_+_88298266 0.07 ENSRNOT00000041508

chr19_-_55510460 0.07 ENSRNOT00000019820
CBFA2/RUNX1 translocation partner 3
chr1_-_75154325 0.07 ENSRNOT00000074520
similar to hepatic multiple inositol polyphosphate phosphatase
chr1_+_192233910 0.07 ENSRNOT00000016418
ENSRNOT00000016442
protein kinase C, beta
chr10_+_90731865 0.06 ENSRNOT00000064429
ADAM metallopeptidase domain 11
chr4_-_147893992 0.06 ENSRNOT00000032158
plexin D1
chr2_-_219262901 0.06 ENSRNOT00000037068
G-protein coupled receptor 88
chr10_+_85301875 0.06 ENSRNOT00000080935
suppressor of cytokine signaling 7
chr10_-_55965216 0.06 ENSRNOT00000057058
chromodomain helicase DNA binding protein 3
chr10_-_89338739 0.06 ENSRNOT00000073923
prostaglandin E synthase 3 like
chr15_-_33725188 0.06 ENSRNOT00000083941
zinc finger homeobox 2
chrX_-_26376467 0.06 ENSRNOT00000051655
ENSRNOT00000036502
Rho GTPase activating protein 6
chr18_+_44468784 0.05 ENSRNOT00000031812
Dmx-like 1
chr14_+_104250617 0.05 ENSRNOT00000079874
sprouty-related, EVH1 domain containing 2
chr2_+_11658568 0.05 ENSRNOT00000076408
ENSRNOT00000076416
ENSRNOT00000076992
ENSRNOT00000075931
ENSRNOT00000076136
ENSRNOT00000076481
ENSRNOT00000076084
ENSRNOT00000076230
ENSRNOT00000076710
ENSRNOT00000076239
myocyte enhancer factor 2C
chr17_-_89163113 0.05 ENSRNOT00000050445
ribosomal protein S19-like
chr4_-_19413484 0.05 ENSRNOT00000009489
semaphorin 3D
chr7_-_50638798 0.05 ENSRNOT00000048880
synaptotagmin 1
chr11_-_68349238 0.05 ENSRNOT00000030074
semaphorin 5B
chr11_-_83926524 0.05 ENSRNOT00000041777
ENSRNOT00000040029
eukaryotic translation initiation factor 4 gamma, 1
chr5_+_151362019 0.05 ENSRNOT00000077083
ENSRNOT00000067801
WAS protein family, member 2
chr3_-_94418711 0.05 ENSRNOT00000089554
homeodomain interacting protein kinase 3
chr18_+_14756684 0.05 ENSRNOT00000076085
ENSRNOT00000076129
microtubule-associated protein, RP/EB family, member 2
chr2_+_251863069 0.05 ENSRNOT00000036282
synapse defective Rho GTPase homolog 2
chr20_-_8202924 0.05 ENSRNOT00000071399
transmembrane protein 217
chr13_-_76049363 0.04 ENSRNOT00000075865
ENSRNOT00000007455
BMP/retinoic acid inducible neural specific 2
chr4_-_88649216 0.04 ENSRNOT00000058626
HECT and RLD domain containing E3 ubiquitin protein ligase family member 6
chr5_-_16140896 0.04 ENSRNOT00000029503
XK related 4
chr1_+_167374182 0.04 ENSRNOT00000092882
stromal interaction molecule 1
chr3_-_66885085 0.04 ENSRNOT00000084299
ENSRNOT00000090547
phosphodiesterase 1A
chr10_-_62699723 0.04 ENSRNOT00000086706
coronin 6
chr11_-_45510961 0.04 ENSRNOT00000002238
translocase of outer mitochondrial membrane 70
chr1_-_80331626 0.04 ENSRNOT00000022577

chr1_+_199287710 0.04 ENSRNOT00000082121
syntaxin 4
chr1_+_104635989 0.04 ENSRNOT00000078477
neuron navigator 2
chr2_+_189423559 0.04 ENSRNOT00000029076
tropomyosin 3
chr2_+_187988925 0.04 ENSRNOT00000093033
ENSRNOT00000093016
Rho/Rac guanine nucleotide exchange factor 2
chr11_+_45888221 0.04 ENSRNOT00000071932
ENSRNOT00000066008
ENSRNOT00000060802
leukemia NUP98 fusion partner 1
chr17_+_75352389 0.04 ENSRNOT00000023436
CUGBP, Elav-like family member 2
chr8_+_68526093 0.04 ENSRNOT00000011385
alpha- and gamma-adaptin binding protein
chr1_-_220265772 0.04 ENSRNOT00000027119
neuronal PAS domain protein 4
chr11_-_11214141 0.04 ENSRNOT00000065748
roundabout guidance receptor 2
chr1_-_54748763 0.04 ENSRNOT00000074549
protein MAL2-like
chr13_+_44475970 0.04 ENSRNOT00000024602
ENSRNOT00000091645
cyclin T2
chr20_-_47306318 0.04 ENSRNOT00000075151
nuclear receptor subfamily 2, group E, member 1
chr2_-_186245163 0.04 ENSRNOT00000089339
doublecortin-like kinase 2
chr14_-_81023682 0.04 ENSRNOT00000081570
regulator of G-protein signaling 12
chr5_+_144634143 0.04 ENSRNOT00000075558
similar to hypothetical protein FLJ38984
chr15_+_4240203 0.04 ENSRNOT00000010178
MSS51 mitochondrial translational activator
chr10_+_83231238 0.04 ENSRNOT00000077625
speckle type BTB/POZ protein
chr7_+_141702038 0.04 ENSRNOT00000086577
disco-interacting protein 2 homolog B
chr1_+_266952561 0.03 ENSRNOT00000076452
neuralized E3 ubiquitin protein ligase 1
chr16_+_19686630 0.03 ENSRNOT00000081321
myosin IXb
chr12_-_44279002 0.03 ENSRNOT00000064900
F-box protein 21
chr2_+_179952227 0.03 ENSRNOT00000015081
platelet derived growth factor C
chr15_+_120372 0.03 ENSRNOT00000007828
discs large MAGUK scaffold protein 5
chr1_+_260093641 0.03 ENSRNOT00000019521
cyclin J
chr5_+_3955227 0.03 ENSRNOT00000009908
musculin
chr10_-_15928169 0.03 ENSRNOT00000028069
neuron specific gene family member 2
chr8_-_87419564 0.03 ENSRNOT00000015365
filamin A interacting protein 1
chr9_-_82382272 0.03 ENSRNOT00000025627
ATP-binding cassette, subfamily B (MDR/TAP), member 6
chr18_-_14016713 0.03 ENSRNOT00000041125
nucleolar protein 4
chr2_+_77868412 0.03 ENSRNOT00000065897
ENSRNOT00000014022
myosin X
chr3_+_5624506 0.03 ENSRNOT00000036995
ADAMTS-like 2
chr10_+_92628356 0.03 ENSRNOT00000072480
myosin, light chain 4
chr2_-_94730978 0.03 ENSRNOT00000087598
zinc finger and BTB domain containing 10
chr4_-_129619142 0.03 ENSRNOT00000047453
leiomodin 3
chr13_-_111581018 0.03 ENSRNOT00000083072
ENSRNOT00000077981
SERTA domain containing 4
chrX_+_71335491 0.03 ENSRNOT00000076003
non-POU domain containing, octamer-binding
chr1_-_88690534 0.03 ENSRNOT00000072570
ovo-like zinc finger 3
chr3_-_81304181 0.03 ENSRNOT00000079746
mitogen-activated protein kinase 8 interacting protein 1
chrX_-_136150209 0.03 ENSRNOT00000048498
ecto-NOX disulfide-thiol exchanger 2
chr4_+_6282278 0.03 ENSRNOT00000010349
lysine methyltransferase 2C
chr10_+_44271587 0.03 ENSRNOT00000047700
tripartite motif-containing 58
chr8_-_96132634 0.03 ENSRNOT00000041655
synaptotagmin binding, cytoplasmic RNA interacting protein
chrX_+_107695491 0.03 ENSRNOT00000071973
family with sequence similarity 199, X-linked
chr6_-_50846965 0.03 ENSRNOT00000087300
solute carrier family 26 member 4
chr2_-_181026024 0.03 ENSRNOT00000064930
guanylate cyclase 1 soluble subunit beta 3
chr10_-_29450644 0.03 ENSRNOT00000087937
adrenoceptor alpha 1B
chr10_-_95934345 0.03 ENSRNOT00000004349
calcium voltage-gated channel auxiliary subunit gamma 1
chr7_-_36000906 0.03 ENSRNOT00000011178
plexin C1
chr3_+_172155496 0.02 ENSRNOT00000066279
syntaxin 16
chr8_-_62616828 0.02 ENSRNOT00000068340
AT-rich interaction domain 3B
chr10_+_34185898 0.02 ENSRNOT00000003339
tripartite motif-containing 7
chr9_-_71445739 0.02 ENSRNOT00000019698
frizzled class receptor 5
chr9_-_32019205 0.02 ENSRNOT00000016194
adhesion G protein-coupled receptor B3
chr1_+_128924966 0.02 ENSRNOT00000019267
insulin-like growth factor 1 receptor
chr18_+_60392376 0.02 ENSRNOT00000023890
neural precursor cell expressed, developmentally down-regulated 4-like, E3 ubiquitin protein ligase
chr12_-_36398206 0.02 ENSRNOT00000090944
ENSRNOT00000058492
transmembrane protein 132B
chr6_-_99783047 0.02 ENSRNOT00000009028
spectrin, beta, erythrocytic
chr3_-_122947075 0.02 ENSRNOT00000082369
PC-esterase domain containing 1A
chr1_-_128695995 0.02 ENSRNOT00000077020
synemin
chr2_+_196594303 0.02 ENSRNOT00000064442
ENSRNOT00000044738
aryl hydrocarbon receptor nuclear translocator
chr6_-_72462657 0.02 ENSRNOT00000088720
ENSRNOT00000077578
striatin 3
chr15_-_8931983 0.02 ENSRNOT00000085322
thyroid hormone receptor beta
chr6_+_127207732 0.02 ENSRNOT00000071976
similar to RIKEN cDNA A830059I20
chr9_+_111028575 0.02 ENSRNOT00000043451
peptidylglycine alpha-amidating monooxygenase
chrX_+_50599060 0.02 ENSRNOT00000058420

chr1_+_215609036 0.02 ENSRNOT00000076187
troponin I2, fast skeletal type
chr3_-_123723524 0.02 ENSRNOT00000080351
centromere protein B
chr14_-_82287706 0.02 ENSRNOT00000080695
fibroblast growth factor receptor 3
chr19_+_54060622 0.02 ENSRNOT00000023607
Gse1 coiled-coil protein
chr4_-_62438958 0.02 ENSRNOT00000014010
WD repeat domain 91
chr1_+_15642153 0.02 ENSRNOT00000079845
microtubule-associated protein 7
chr7_-_98098268 0.02 ENSRNOT00000010361
F-box protein 32
chr8_+_65733400 0.02 ENSRNOT00000089126
uveal autoantigen with coiled-coil domains and ankyrin repeats
chr19_+_17290178 0.02 ENSRNOT00000060865
AKT interacting protein
chr5_+_58937615 0.02 ENSRNOT00000080909
testis-specific kinase 1
chr7_+_63922879 0.02 ENSRNOT00000043581
similar to Hypothetical protein LOC270802
chr7_+_71065197 0.02 ENSRNOT00000051075
retinol dehydrogenase 16 (all-trans)
chr4_-_178168690 0.02 ENSRNOT00000020729
SRY box 5
chr6_-_128727374 0.02 ENSRNOT00000082152
spectrin repeat containing, nuclear envelope family member 3
chr4_+_65637407 0.01 ENSRNOT00000047954
tripartite motif-containing 24
chr1_-_213650247 0.01 ENSRNOT00000019679
cytochrome c oxidase, subunit VIIIb
chr1_+_265298868 0.01 ENSRNOT00000023278
deleted in primary ciliary dyskinesia
chr4_+_6559545 0.01 ENSRNOT00000067183
protein kinase AMP-activated non-catalytic subunit gamma 2
chr13_-_110642754 0.01 ENSRNOT00000029039
hydroxysteroid 17-beta dehydrogenase 6-like
chr1_-_31055453 0.01 ENSRNOT00000031083
SOGA family member 3
chr10_+_91254058 0.01 ENSRNOT00000087218
ENSRNOT00000065373
formin-like 1
chr9_+_88357556 0.01 ENSRNOT00000020669
collagen type IV alpha 3 chain
chr15_+_33555640 0.01 ENSRNOT00000021096
poly(A) binding protein, nuclear 1
chr17_+_31441630 0.01 ENSRNOT00000083705
ENSRNOT00000023582
tubulin, beta 2B class IIb
chr19_+_52032886 0.01 ENSRNOT00000019923
malonyl-CoA decarboxylase
chr1_-_215846911 0.01 ENSRNOT00000089171
insulin-like growth factor 2
chr5_-_101006375 0.01 ENSRNOT00000014008
cerberus 1, DAN family BMP antagonist
chr3_+_13838304 0.01 ENSRNOT00000025067
heat shock protein family A member 5
chr5_-_113578928 0.01 ENSRNOT00000010621
phospholipase A2, activating protein
chr19_+_57484634 0.01 ENSRNOT00000025695
ARV1 homolog, fatty acid homeostasis modulator
chr1_+_215609645 0.01 ENSRNOT00000076140
ENSRNOT00000027487
troponin I2, fast skeletal type
chr13_-_73704480 0.01 ENSRNOT00000005296
torsin 1A interacting protein 1
chr8_-_122987191 0.01 ENSRNOT00000033976
glycerol-3-phosphate dehydrogenase 1-like
chr16_-_40025401 0.01 ENSRNOT00000066639
ankyrin repeat and SOCS box-containing 5
chr10_-_8654892 0.01 ENSRNOT00000066534
RNA binding protein, fox-1 homolog 1
chr6_-_105518725 0.01 ENSRNOT00000009693
ENSRNOT00000083488
mitogen-activated protein kinase kinase kinase 9
chr15_+_2526368 0.01 ENSRNOT00000048713
ENSRNOT00000074803
dual specificity phosphatase 13
dual specificity phosphatase 13
chrX_-_112328642 0.01 ENSRNOT00000083150
proteasome 26S subunit, non-ATPase 10
chr19_-_55434252 0.01 ENSRNOT00000045052
poly(A)binding protein nuclear 1-like
chr11_-_82860977 0.01 ENSRNOT00000002382
RNA polymerase II subunit H
chr2_-_43999107 0.01 ENSRNOT00000065473
mitogen-activated protein kinase kinase kinase 1-like
chr13_+_51958834 0.01 ENSRNOT00000007833
protein tyrosine phosphatase, non-receptor type 7
chr8_-_116469915 0.01 ENSRNOT00000024193
semaphorin 3F
chr7_+_94130852 0.01 ENSRNOT00000011485
mal, T-cell differentiation protein 2
chr10_-_109827143 0.01 ENSRNOT00000054948
myeloid-associated differentiation marker-like 2
chr8_-_33017854 0.01 ENSRNOT00000011386
BARX homeobox 2
chr2_+_197720259 0.01 ENSRNOT00000070919
golgi phosphoprotein 3-like
chr5_+_48313599 0.01 ENSRNOT00000081825
gamma-aminobutyric acid type A receptor rho 2 subunit
chr10_-_56511583 0.01 ENSRNOT00000021402
similar to RIKEN cDNA 2810408A11
chr2_-_184289126 0.01 ENSRNOT00000081678
F-box and WD repeat domain containing 7
chr1_-_44474674 0.01 ENSRNOT00000078768
transcription factor B1, mitochondrial
chr5_+_61657507 0.01 ENSRNOT00000013228
tropomodulin 1
chr1_+_101214593 0.01 ENSRNOT00000028086
TEA domain transcription factor 2
chr1_+_220353356 0.01 ENSRNOT00000080189
CD248 molecule
chr13_+_52889737 0.01 ENSRNOT00000074366
calcium voltage-gated channel subunit alpha1 S
chr13_+_60435946 0.01 ENSRNOT00000004342
Beta-1,3-galactosyltransferase 2
chr1_-_72464492 0.01 ENSRNOT00000068550
N-acetyltransferase 14
chr16_+_32457521 0.01 ENSRNOT00000083579
chloride voltage-gated channel 3
chr4_+_113970079 0.01 ENSRNOT00000079547
rhotekin
chrX_-_111191932 0.01 ENSRNOT00000088050
ENSRNOT00000083613
MORC family CW-type zinc finger 4
chr2_+_3400977 0.01 ENSRNOT00000093593
multiple C2 and transmembrane domain containing 1
chr5_+_28850950 0.01 ENSRNOT00000009759
transmembrane protein 64
chr5_-_59025631 0.01 ENSRNOT00000049000
ENSRNOT00000022801
tropomyosin 2, beta
chr17_+_9639330 0.01 ENSRNOT00000018232
docking protein 3
chr13_+_52662996 0.01 ENSRNOT00000047682
troponin T2, cardiac type
chr8_+_130416355 0.01 ENSRNOT00000026234
kelch-like family member 40
chr9_-_82419288 0.00 ENSRNOT00000004797
tubulin, alpha 4A
chr7_+_79138925 0.00 ENSRNOT00000047511

chr15_-_108120279 0.00 ENSRNOT00000090572
dedicator of cytokinesis 9
chr9_-_82336806 0.00 ENSRNOT00000024667
solute carrier family 23, member 3
chr7_+_102586313 0.00 ENSRNOT00000006188
myelocytomatosis oncogene
chr5_-_79317110 0.00 ENSRNOT00000082513
ENSRNOT00000002309
whirlin
chr2_+_189922996 0.00 ENSRNOT00000016499
S100 calcium binding protein A16
chr5_+_18901039 0.00 ENSRNOT00000012066
family with sequence similarity 110, member B
chrX_+_86126157 0.00 ENSRNOT00000006992
kelch-like family member 4
chr13_+_99173484 0.00 ENSRNOT00000080574
ENSRNOT00000088654
Left-right determination factor 2
chr5_+_147476221 0.00 ENSRNOT00000010730
syncoilin, intermediate filament protein
chr2_+_58462949 0.00 ENSRNOT00000080618
NAD kinase 2, mitochondrial
chr2_-_118745766 0.00 ENSRNOT00000013858
zinc finger, matrin type 3
chr7_-_144837583 0.00 ENSRNOT00000055289
chromobox 5
chr7_+_141054494 0.00 ENSRNOT00000088176
transmembrane BAX inhibitor motif containing 6

Network of associatons between targets according to the STRING database.

First level regulatory network of Myod1

PNG image of the network

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 0.1 GO:0031179 peptide modification(GO:0031179)
0.0 0.1 GO:0036309 protein localization to M-band(GO:0036309) protein localization to T-tubule(GO:0036371)
0.0 0.1 GO:0035408 histone H3-T6 phosphorylation(GO:0035408)
0.0 0.1 GO:1904717 regulation of AMPA glutamate receptor clustering(GO:1904717)
0.0 0.1 GO:0061743 motor learning(GO:0061743)
0.0 0.0 GO:1902568 regulation of eosinophil degranulation(GO:0043309) positive regulation of eosinophil degranulation(GO:0043311) positive regulation of eosinophil activation(GO:1902568)
0.0 0.1 GO:2000111 positive regulation of macrophage apoptotic process(GO:2000111) epithelial cell proliferation involved in renal tubule morphogenesis(GO:2001013)
0.0 0.0 GO:0019086 late viral transcription(GO:0019086)
0.0 0.0 GO:0014707 branchiomeric skeletal muscle development(GO:0014707)
0.0 0.1 GO:0060666 dichotomous subdivision of terminal units involved in salivary gland branching(GO:0060666)
0.0 0.0 GO:0021564 vagus nerve development(GO:0021564)

Gene overrepresentation in cellular component category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 0.2 GO:1990635 proximal dendrite(GO:1990635)

Gene overrepresentation in molecular function category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 0.1 GO:0016842 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced ascorbate as one donor, and incorporation of one atom of oxygen(GO:0016715) amidine-lyase activity(GO:0016842)
0.0 0.1 GO:0035403 histone kinase activity (H3-T6 specific)(GO:0035403)
0.0 0.1 GO:0051377 mannose-ethanolamine phosphotransferase activity(GO:0051377)
0.0 0.1 GO:0030160 GKAP/Homer scaffold activity(GO:0030160)
0.0 0.0 GO:0016230 sphingomyelin phosphodiesterase activator activity(GO:0016230)
0.0 0.1 GO:0004111 creatine kinase activity(GO:0004111)
0.0 0.0 GO:0048101 calcium- and calmodulin-regulated 3',5'-cyclic-GMP phosphodiesterase activity(GO:0048101)
0.0 0.1 GO:0030348 syntaxin-3 binding(GO:0030348)