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GSE49485: Hypoxia transcriptome sequencing of rat brain.

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Results for Hoxa11_Hoxc12

Z-value: 0.38

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Transcription factors associated with Hoxa11_Hoxc12

Gene Symbol Gene ID Gene Info
ENSRNOG00000059870 homeobox A11
ENSRNOG00000053884 homeobox A11
ENSRNOG00000016116 homeo box C12

Activity profile of Hoxa11_Hoxc12 motif

Sorted Z-values of Hoxa11_Hoxc12 motif

Promoter Log-likelihood Transcript Gene Gene Info
chr14_+_4362717 0.28 ENSRNOT00000002887
BarH-like homeobox 2
chr4_-_82173207 0.22 ENSRNOT00000074167
homeo box A5
chr7_-_13751271 0.20 ENSRNOT00000009931
solute carrier family 1 member 6
chr10_+_84152152 0.19 ENSRNOT00000010724
homeo box B5
chr5_+_152533349 0.13 ENSRNOT00000067524
tripartite motif containing 63
chr5_-_156734541 0.10 ENSRNOT00000021036
cytidine deaminase-like
chr3_-_64554953 0.10 ENSRNOT00000067452
serine/arginine repetitive matrix protein 1-like
chr15_-_37831031 0.09 ENSRNOT00000091562
eukaryotic translation elongation factor 1 alpha lysine methyltransferase 1
chr1_+_154606490 0.08 ENSRNOT00000024095
coiled-coil domain containing 89
chr4_+_66276835 0.08 ENSRNOT00000007544
formation of mitochondrial complex V assembly factor 1
chr10_-_109622745 0.08 ENSRNOT00000074354
ENSRNOT00000088317
phosphodiesterase 6G
chr3_+_11593655 0.07 ENSRNOT00000074122
phosphatidylinositol-4-phosphate 5-kinase-like 1
chr1_-_93949187 0.07 ENSRNOT00000018956
zinc finger protein 536
chr7_-_11963268 0.07 ENSRNOT00000080342
ENSRNOT00000025266
casein kinase 1, gamma 2
chr4_-_34194764 0.07 ENSRNOT00000045270
collagen type XXVIII alpha 1 chain
chr13_+_47440803 0.07 ENSRNOT00000030476
YOD1 deubiquitinase
chr4_+_10748745 0.07 ENSRNOT00000046142
round spermatid basic protein 1-like
chr17_+_44763598 0.06 ENSRNOT00000079880
histone cluster 1, H3b
chr6_-_15191660 0.06 ENSRNOT00000092654
neurexin 1
chr14_-_20920286 0.06 ENSRNOT00000004391
solute carrier family 4 member 4
chr5_-_147584038 0.06 ENSRNOT00000010983
zinc finger and BTB domain containing 8a
chr1_-_156327352 0.06 ENSRNOT00000074282
coiled-coil domain-containing protein 89-like
chr4_+_97657671 0.06 ENSRNOT00000075400
G protein subunit gamma 12
chr8_+_82380757 0.06 ENSRNOT00000013512
LEO1 homolog, Paf1/RNA polymerase II complex component
chr4_+_140247313 0.06 ENSRNOT00000040255
ENSRNOT00000064025
ENSRNOT00000041130
ENSRNOT00000043646
inositol 1,4,5-trisphosphate receptor, type 1
chr4_-_82258765 0.05 ENSRNOT00000008523
homeo box A5
chr17_+_77195247 0.05 ENSRNOT00000081940
optineurin
chr8_+_58347736 0.05 ENSRNOT00000080227
ENSRNOT00000066222
solute carrier family 35, member F2
chr1_-_53014466 0.05 ENSRNOT00000049831
SFT2 domain containing 1
chr9_+_50526811 0.05 ENSRNOT00000036990
similar to RIKEN cDNA 1500015O10
chr8_+_67615635 0.05 ENSRNOT00000008971
integrin subunit alpha 11
chr11_-_74866451 0.04 ENSRNOT00000002330
interleukin 13 receptor subunit alpha 1
chr2_+_159138758 0.04 ENSRNOT00000087942

chr11_-_4397361 0.04 ENSRNOT00000046370
cell adhesion molecule 2
chr17_+_9289189 0.04 ENSRNOT00000015632
H2A histone family, member Y
chr1_+_99561523 0.04 ENSRNOT00000038229
carcinoembryonic antigen-related cell adhesion molecule 18
chr18_+_38847632 0.04 ENSRNOT00000014916
ELMO domain-containing protein 2-like
chrX_+_111735820 0.04 ENSRNOT00000086948
FERM and PDZ domain containing 3
chr14_+_84211600 0.04 ENSRNOT00000005996
pescadillo ribosomal biogenesis factor 1
chr7_+_121480723 0.04 ENSRNOT00000065304
activating transcription factor 4
chr7_-_119200623 0.04 ENSRNOT00000029753
eukaryotic translation initiation factor 3, subunit D
chr8_-_55087832 0.04 ENSRNOT00000032152
dihydrolipoamide S-acetyltransferase
chr14_-_3288017 0.03 ENSRNOT00000080452
hypothetical protein LOC689986
chr14_+_46001849 0.03 ENSRNOT00000076611
RELT-like 1
chr1_+_128606770 0.03 ENSRNOT00000073355
tetratricopeptide repeat domain 23
chr10_-_13446135 0.03 ENSRNOT00000084991
potassium channel tetramerization domain containing 5
chr7_+_117434419 0.03 ENSRNOT00000040981
HGH1 homolog
chr18_+_70263359 0.03 ENSRNOT00000019573
cilia and flagella associated protein 53
chr6_-_51018050 0.03 ENSRNOT00000082691
G protein-coupled receptor 22
chr8_+_99568958 0.03 ENSRNOT00000073400
phospholipid scramblase family, member 5
chr18_+_36713869 0.03 ENSRNOT00000025465
POU class 4 homeobox 3
chr1_-_211265161 0.03 ENSRNOT00000080041
ENSRNOT00000023477
BCL2 interacting protein 3
chr2_-_32518643 0.03 ENSRNOT00000061032
microtubule associated serine/threonine kinase family member 4
chrX_+_131617798 0.03 ENSRNOT00000074384
proline rich 32
chr15_+_33544312 0.02 ENSRNOT00000020409
Bcl2-like 2
chr6_+_96834525 0.02 ENSRNOT00000077935
hypoxia inducible factor 1 alpha subunit
chr1_-_225952516 0.02 ENSRNOT00000043387
inner centromere protein
chr3_-_154490851 0.02 ENSRNOT00000017213
TELO2 interacting protein 1
chr2_-_18565842 0.02 ENSRNOT00000067456
ENSRNOT00000063821
ENSRNOT00000045532
versican
chrX_-_2116483 0.02 ENSRNOT00000055077
retinitis pigmentosa 2 (X-linked recessive)
chr3_-_152179193 0.02 ENSRNOT00000026700
RNA binding motif protein 12
chr10_-_84920886 0.02 ENSRNOT00000068083
Sp2 transcription factor
chr4_-_176679815 0.02 ENSRNOT00000090122
glycogen synthase 2
chr6_+_107531528 0.02 ENSRNOT00000077555
acyl-CoA thioesterase 3
chr14_-_44375804 0.02 ENSRNOT00000042825
ribosomal protein P2-like
chr5_-_60559533 0.02 ENSRNOT00000092899
zinc finger and BTB domain containing 5
chr3_-_121226125 0.02 ENSRNOT00000055875
anaphase promoting complex subunit 1
chr1_-_53038229 0.02 ENSRNOT00000017282
mitochondrial pyruvate carrier 1
chr5_+_165415136 0.02 ENSRNOT00000016317
ENSRNOT00000079407
mannan-binding lectin serine peptidase 2
chr5_-_109651730 0.02 ENSRNOT00000093032
ELAV like RNA binding protein 2
chr2_-_202816562 0.02 ENSRNOT00000020401
family with sequence similarity 46, member C
chr3_+_159392193 0.02 ENSRNOT00000078101
ENSRNOT00000066260
intraflagellar transport 52
chr7_-_15852930 0.02 ENSRNOT00000009270
similar to zinc finger protein 101
chr5_-_156781291 0.02 ENSRNOT00000075128
cytidine deaminase
chr9_-_17880706 0.02 ENSRNOT00000031549
alanyl-tRNA synthetase 2, mitochondrial
chr7_-_91538673 0.02 ENSRNOT00000006209
RAD21 cohesin complex component
chr16_+_62251243 0.02 ENSRNOT00000020347
UBX domain protein 8
chr16_-_20511818 0.02 ENSRNOT00000026567
LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated
chr2_+_230901126 0.01 ENSRNOT00000016026
ENSRNOT00000015564
ENSRNOT00000068198
calcium/calmodulin-dependent protein kinase II delta
chr15_-_39705208 0.01 ENSRNOT00000015412
PHD finger protein 11
chr4_-_50312608 0.01 ENSRNOT00000010019
Fez family zinc finger 1
chr8_+_99625545 0.01 ENSRNOT00000010689
ENSRNOT00000056727
phospholipid scramblase 1
chrX_-_2116656 0.01 ENSRNOT00000081913
retinitis pigmentosa 2 (X-linked recessive)
chr14_-_6201002 0.01 ENSRNOT00000049165
rCG37858-like
chr8_-_36388224 0.01 ENSRNOT00000038312
TIR domain containing adaptor protein
chr7_+_119554354 0.01 ENSRNOT00000000203
colony stimulating factor 2 receptor beta common subunit
chr1_+_47162394 0.01 ENSRNOT00000068457
transmembrane protein 181
chr16_-_64745207 0.01 ENSRNOT00000032467
TELO2 interacting protein 2
chr1_-_22625204 0.01 ENSRNOT00000021694
vanin 1
chr11_-_70211701 0.01 ENSRNOT00000076114
mucin 13, cell surface associated
chr2_-_30634243 0.01 ENSRNOT00000077537
MARVEL domain containing 2
chr9_+_11031841 0.01 ENSRNOT00000074695
SH3 domain-containing GRB2-like 1
chr5_-_14356692 0.01 ENSRNOT00000085654
ATPase H+ transporting V1 subunit H
chr2_+_180936688 0.01 ENSRNOT00000016039
acid sensing ion channel subunit family member 5
chr3_-_79282493 0.01 ENSRNOT00000049832
protein tyrosine phosphatase, receptor type, J
chr10_+_57131386 0.01 ENSRNOT00000026507
proteasome subunit beta 6
chr7_+_118502676 0.01 ENSRNOT00000005925
COMM domain containing 5
chr7_+_54756043 0.01 ENSRNOT00000063917
KRR1, small subunit processome component homolog
chr11_+_66316606 0.01 ENSRNOT00000041715
syntaxin binding protein 5-like
chr6_-_102372611 0.01 ENSRNOT00000085927
retinol dehydrogenase 11 (all-trans/9-cis/11-cis)
chr7_+_66717434 0.01 ENSRNOT00000077878
MON2 homolog, regulator of endosome-to-Golgi trafficking
chr18_-_37776453 0.01 ENSRNOT00000087876
dihydropyrimidinase-like 3
chr16_+_80904125 0.01 ENSRNOT00000080832
transmembrane and coiled-coil domains 3
chr20_-_30749940 0.01 ENSRNOT00000065127
sphingosine-1-phosphate lyase 1
chr2_+_196655469 0.01 ENSRNOT00000028730
cathepsin K
chr8_+_1459526 0.01 ENSRNOT00000034503
kelch repeat and BTB domain containing 3
chr1_+_68239314 0.01 ENSRNOT00000070823
vomeronasal 1 receptor 109
chr5_+_127489418 0.00 ENSRNOT00000065275
similar to RIKEN cDNA 0610037L13
chr1_+_94718402 0.00 ENSRNOT00000046035
ubiquinol-cytochrome c reductase binding protein
chr10_-_83128297 0.00 ENSRNOT00000082160
lysine acetyltransferase 7
chr1_-_271275989 0.00 ENSRNOT00000075570
inositol 1,4,5-trisphosphate receptor-interacting protein-like
chr16_+_68633720 0.00 ENSRNOT00000081838
sperm motility kinase-like
chr6_-_102372385 0.00 ENSRNOT00000078436
retinol dehydrogenase 11 (all-trans/9-cis/11-cis)
chr10_-_90356242 0.00 ENSRNOT00000028496
solute carrier family 25, member 39
chr13_-_53870428 0.00 ENSRNOT00000000812
nuclear receptor subfamily 5, group A, member 2
chr5_+_122019301 0.00 ENSRNOT00000068158
phosphodiesterase 4B
chr16_-_36080191 0.00 ENSRNOT00000017635
high mobility group box 2-like 1
chr13_-_47440682 0.00 ENSRNOT00000037679
ENSRNOT00000005729
ENSRNOT00000050354
ENSRNOT00000050859
6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 2
chr6_-_92007917 0.00 ENSRNOT00000006425
ENSRNOT00000089891
SOS Ras/Rho guanine nucleotide exchange factor 2
chr11_+_73693814 0.00 ENSRNOT00000081081
ENSRNOT00000002354
ENSRNOT00000090940
large 60S subunit nuclear export GTPase 1
chr10_+_63884338 0.00 ENSRNOT00000007100
tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon
chr9_-_112027155 0.00 ENSRNOT00000021258
ENSRNOT00000080962
praja ring finger ubiquitin ligase 2
chr20_-_6556350 0.00 ENSRNOT00000035819
LEM domain containing 2
chr13_-_51297621 0.00 ENSRNOT00000030926
NADH:ubiquinone oxidoreductase subunit V3
chr5_-_160282810 0.00 ENSRNOT00000076160
ENSRNOT00000016352
DNA-damage inducible protein 2
chr6_-_51019407 0.00 ENSRNOT00000011659
G protein-coupled receptor 22
chr2_-_189333322 0.00 ENSRNOT00000073599
ENSRNOT00000071253
ENSRNOT00000076325
HCLS1 associated protein X-1
chr17_+_47302272 0.00 ENSRNOT00000090021
NME/NM23 family member 8
chrX_-_153491837 0.00 ENSRNOT00000089027
eukaryotic translation elongation factor 1 alpha 1-like
chr16_+_24980723 0.00 ENSRNOT00000082142
translation machinery associated 16 homolog
chr5_-_115387377 0.00 ENSRNOT00000036030
ENSRNOT00000077492
similar to hypothetical protein MGC34837
chr1_+_247228061 0.00 ENSRNOT00000020809
RNA terminal phosphate cyclase-like 1
chr1_-_174379566 0.00 ENSRNOT00000067388
TMEM9 domain family, member B
chr2_+_166856784 0.00 ENSRNOT00000035765
otolin 1

Network of associatons between targets according to the STRING database.

First level regulatory network of Hoxa11_Hoxc12

PNG image of the network

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.3 GO:0060764 cell-cell signaling involved in mammary gland development(GO:0060764)
0.0 0.1 GO:0014878 response to electrical stimulus involved in regulation of muscle adaptation(GO:0014878)
0.0 0.1 GO:0009972 cytidine catabolic process(GO:0006216) cytidine deamination(GO:0009972) cytidine metabolic process(GO:0046087)
0.0 0.1 GO:1990167 protein K27-linked deubiquitination(GO:1990167) protein K33-linked deubiquitination(GO:1990168)
0.0 0.0 GO:0033128 negative regulation of histone phosphorylation(GO:0033128) negative regulation of protein localization to chromosome, telomeric region(GO:1904815)
0.0 0.1 GO:0097112 gamma-aminobutyric acid receptor clustering(GO:0097112)
0.0 0.0 GO:1990737 negative regulation of translational initiation in response to stress(GO:0032057) response to manganese-induced endoplasmic reticulum stress(GO:1990737)
0.0 0.0 GO:0002191 cap-dependent translational initiation(GO:0002191)
0.0 0.2 GO:0089711 L-glutamate transmembrane transport(GO:0089711)
0.0 0.0 GO:0071250 cellular response to nitrite(GO:0071250) response to nitrite(GO:0080033)
0.0 0.0 GO:0035772 interleukin-13-mediated signaling pathway(GO:0035772)

Gene overrepresentation in cellular component category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 0.1 GO:0031088 platelet dense granule membrane(GO:0031088)
0.0 0.0 GO:1990590 Lewy body core(GO:1990037) ATF4-CREB1 transcription factor complex(GO:1990589) ATF1-ATF4 transcription factor complex(GO:1990590)

Gene overrepresentation in molecular function category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 0.1 GO:0004126 cytidine deaminase activity(GO:0004126)
0.0 0.1 GO:1990269 RNA polymerase II C-terminal domain phosphoserine binding(GO:1990269)
0.0 0.1 GO:0005220 inositol 1,4,5-trisphosphate-sensitive calcium-release channel activity(GO:0005220)
0.0 0.2 GO:0005313 L-glutamate transmembrane transporter activity(GO:0005313)
0.0 0.1 GO:0031432 titin binding(GO:0031432)
0.0 0.1 GO:0001155 TFIIIA-class transcription factor binding(GO:0001155)