GSE49485: Hypoxia transcriptome sequencing of rat brain.
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
Snai1 | rn6_v1_chr3_+_164274710_164274710 | 0.86 | 6.4e-02 | Click! |
Zeb1 | rn6_v1_chr17_-_54714914_54714914 | 0.74 | 1.5e-01 | Click! |
Snai2 | rn6_v1_chr11_-_90406797_90406797 | 0.62 | 2.7e-01 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr3_-_9037942 Show fit | 1.41 |
ENSRNOT00000036770
|
immediate early response 5-like |
|
chr8_+_91070073 Show fit | 0.56 |
ENSRNOT00000012904
|
SH3 domain binding glutamate-rich protein like 2 |
|
chr3_-_123119460 Show fit | 0.55 |
ENSRNOT00000028833
|
arginine vasopressin |
|
chr4_+_146106386 Show fit | 0.50 |
ENSRNOT00000008342
|
solute carrier family 6 member 11 |
|
chr18_-_57245666 Show fit | 0.40 |
ENSRNOT00000080365
|
actin binding LIM protein family, member 3 |
|
chr12_+_18074033 Show fit | 0.38 |
ENSRNOT00000001727
|
integrator complex subunit 1-like |
|
chrX_-_111942749 Show fit | 0.38 |
ENSRNOT00000087583
|
|
|
chr20_-_4879779 Show fit | 0.35 |
ENSRNOT00000081924
|
heat shock protein family A (Hsp70) member 1B |
|
chr12_-_2174131 Show fit | 0.33 |
ENSRNOT00000001313
|
Purkinje cell protein 2 |
|
chr20_-_2701815 Show fit | 0.33 |
ENSRNOT00000061950
|
heat shock protein family A (Hsp70) member 1A |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.3 | 1.0 | GO:0031439 | positive regulation of mRNA cleavage(GO:0031439) positive regulation of endoribonuclease activity(GO:1902380) positive regulation of mRNA endonucleolytic cleavage involved in unfolded protein response(GO:1904722) |
0.1 | 0.6 | GO:0098886 | modification of dendritic spine(GO:0098886) |
0.0 | 0.6 | GO:0015812 | gamma-aminobutyric acid transport(GO:0015812) |
0.1 | 0.5 | GO:0002125 | maternal aggressive behavior(GO:0002125) |
0.1 | 0.5 | GO:0034472 | snRNA 3'-end processing(GO:0034472) |
0.0 | 0.5 | GO:0051693 | actin filament capping(GO:0051693) |
0.1 | 0.4 | GO:0034497 | protein localization to pre-autophagosomal structure(GO:0034497) |
0.0 | 0.4 | GO:0043374 | CD8-positive, alpha-beta T cell differentiation(GO:0043374) |
0.0 | 0.4 | GO:0048170 | positive regulation of long-term neuronal synaptic plasticity(GO:0048170) |
0.0 | 0.4 | GO:0035025 | positive regulation of Rho protein signal transduction(GO:0035025) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 0.7 | GO:0016235 | aggresome(GO:0016235) |
0.1 | 0.6 | GO:0008091 | spectrin(GO:0008091) |
0.0 | 0.5 | GO:0032039 | integrator complex(GO:0032039) |
0.0 | 0.5 | GO:0097440 | apical dendrite(GO:0097440) |
0.1 | 0.4 | GO:0097444 | spine apparatus(GO:0097444) |
0.0 | 0.4 | GO:0098563 | integral component of synaptic vesicle membrane(GO:0030285) intrinsic component of synaptic vesicle membrane(GO:0098563) |
0.1 | 0.3 | GO:0005594 | collagen type IX trimer(GO:0005594) |
0.0 | 0.3 | GO:0002199 | zona pellucida receptor complex(GO:0002199) |
0.0 | 0.3 | GO:0032279 | asymmetric synapse(GO:0032279) |
0.1 | 0.2 | GO:0098855 | HCN channel complex(GO:0098855) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.3 | 1.0 | GO:0031249 | denatured protein binding(GO:0031249) |
0.2 | 0.5 | GO:0031893 | vasopressin receptor binding(GO:0031893) |
0.1 | 0.5 | GO:0005332 | gamma-aminobutyric acid:sodium symporter activity(GO:0005332) |
0.0 | 0.5 | GO:0030506 | ankyrin binding(GO:0030506) |
0.1 | 0.4 | GO:0030160 | GKAP/Homer scaffold activity(GO:0030160) |
0.0 | 0.4 | GO:0032794 | GTPase activating protein binding(GO:0032794) |
0.0 | 0.4 | GO:0030507 | spectrin binding(GO:0030507) |
0.0 | 0.3 | GO:0008140 | cAMP response element binding protein binding(GO:0008140) |
0.0 | 0.3 | GO:0051959 | dynein light intermediate chain binding(GO:0051959) |
0.0 | 0.3 | GO:0031994 | insulin-like growth factor I binding(GO:0031994) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 0.6 | PID FRA PATHWAY | Validated transcriptional targets of AP1 family members Fra1 and Fra2 |
0.0 | 0.6 | PID SYNDECAN 1 PATHWAY | Syndecan-1-mediated signaling events |
0.0 | 0.4 | PID PI3K PLC TRK PATHWAY | Trk receptor signaling mediated by PI3K and PLC-gamma |
0.0 | 0.3 | PID ECADHERIN NASCENT AJ PATHWAY | E-cadherin signaling in the nascent adherens junction |
0.0 | 0.2 | PID IL5 PATHWAY | IL5-mediated signaling events |
0.0 | 0.2 | PID S1P S1P4 PATHWAY | S1P4 pathway |
0.0 | 0.2 | PID ECADHERIN KERATINOCYTE PATHWAY | E-cadherin signaling in keratinocytes |
0.0 | 0.2 | SA PROGRAMMED CELL DEATH | Programmed cell death, or apoptosis, eliminates damaged or unneeded cells. |
0.0 | 0.2 | SA G1 AND S PHASES | Cdk2, 4, and 6 bind cyclin D in G1, while cdk2/cyclin E promotes the G1/S transition. |
0.0 | 0.1 | PID AVB3 INTEGRIN PATHWAY | Integrins in angiogenesis |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 0.7 | REACTOME TRAFFICKING OF AMPA RECEPTORS | Genes involved in Trafficking of AMPA receptors |
0.0 | 0.7 | REACTOME NCAM1 INTERACTIONS | Genes involved in NCAM1 interactions |
0.1 | 0.6 | REACTOME TRANSPORT OF ORGANIC ANIONS | Genes involved in Transport of organic anions |
0.0 | 0.6 | REACTOME INTERACTION BETWEEN L1 AND ANKYRINS | Genes involved in Interaction between L1 and Ankyrins |
0.0 | 0.5 | REACTOME NA CL DEPENDENT NEUROTRANSMITTER TRANSPORTERS | Genes involved in Na+/Cl- dependent neurotransmitter transporters |
0.0 | 0.5 | REACTOME DCC MEDIATED ATTRACTIVE SIGNALING | Genes involved in DCC mediated attractive signaling |
0.0 | 0.4 | REACTOME NUCLEOTIDE LIKE PURINERGIC RECEPTORS | Genes involved in Nucleotide-like (purinergic) receptors |
0.0 | 0.4 | REACTOME G PROTEIN ACTIVATION | Genes involved in G-protein activation |
0.0 | 0.4 | REACTOME PI METABOLISM | Genes involved in PI Metabolism |
0.0 | 0.3 | REACTOME HS GAG DEGRADATION | Genes involved in HS-GAG degradation |