GSE49485: Hypoxia transcriptome sequencing of rat brain.

• Motif significance table
• Sample table
• Mean activities
• All promoters sorted by FOV

• Activity table
• Activity delta table
• Regulatory interactions
• Motifs sorted by significance
• Expression table
• Download the whole report

Gene Symbol	Gene ID	Gene Info
Hoxc9 Links NCBI RGD Ensembl	ENSRNOG00000016199	homeobox C9

Promoter	Log-likelihood	Transcript	Gene	Gene Info
chr8_-_63291966 Show fit	0.07	ENSRNOT00000077762	AABR07070278.1 Links NCBI RGD Ensembl Show fit
chr6_-_123577695 Show fit	0.06	ENSRNOT00000006604	Foxn3 Links NCBI RGD Ensembl Show fit	forkhead box N3
chr2_+_66940057 Show fit	0.06	ENSRNOT00000043050	Cdh9 Links NCBI RGD Ensembl Show fit	cadherin 9
chr17_+_41798783 Show fit	0.05	ENSRNOT00000023519	Nrsn1 Links NCBI RGD Ensembl Show fit	neurensin 1
chr17_-_78735324 Show fit	0.04	ENSRNOT00000036299	Cdnf Links NCBI RGD Ensembl Show fit	cerebral dopamine neurotrophic factor
chr19_+_43163129 Show fit	0.04	ENSRNOT00000073721	Clec18a Links NCBI RGD Ensembl Show fit	C-type lectin domain family 18, member A
chr9_+_67699379 Show fit	0.04	ENSRNOT00000091237 ENSRNOT00000088183	Ctla4 Links NCBI RGD Ensembl Show fit	cytotoxic T-lymphocyte-associated protein 4
chr19_-_11341863 Show fit	0.04	ENSRNOT00000025694	Mt4 Links NCBI RGD Ensembl Show fit	metallothionein 4
chr1_-_155955173 Show fit	0.04	ENSRNOT00000079345	AABR07004776.1 Links NCBI RGD Ensembl Show fit
chr13_-_32427177 Show fit	0.04	ENSRNOT00000044628	Cdh19 Links NCBI RGD Ensembl Show fit	cadherin 19
chr7_+_123296183 Show fit	0.04	ENSRNOT00000048614	LOC100362109 Links NCBI RGD Ensembl Show fit	hypothetical protein LOC100362109
chr3_-_23020441 Show fit	0.04	ENSRNOT00000017651	Nr5a1 Links NCBI RGD Ensembl Show fit	nuclear receptor subfamily 5, group A, member 1
chr11_-_60679555 Show fit	0.03	ENSRNOT00000059735	Ccdc80 Links NCBI RGD Ensembl Show fit	coiled-coil domain containing 80
chr19_+_50848736 Show fit	0.03	ENSRNOT00000077053	Cdh13 Links NCBI RGD Ensembl Show fit	cadherin 13
chr10_-_88107232 Show fit	0.03	ENSRNOT00000019330 ENSRNOT00000076770	Krt9 Links NCBI RGD Ensembl Show fit	keratin 9
chr2_+_233602732 Show fit	0.03	ENSRNOT00000044232	Pitx2 Links NCBI RGD Ensembl Show fit	paired-like homeodomain 2
chr9_+_10044756 Show fit	0.03	ENSRNOT00000071188	Pspn Links NCBI RGD Ensembl Show fit	persephin
chrX_-_142248369 Show fit	0.03	ENSRNOT00000091330	Fgf13 Links NCBI RGD Ensembl Show fit	fibroblast growth factor 13
chr5_+_154489590 Show fit	0.03	ENSRNOT00000035788	Id3 Links NCBI RGD Ensembl Show fit	inhibitor of DNA binding 3, HLH protein
chr10_-_85974644 Show fit	0.03	ENSRNOT00000006098 ENSRNOT00000082974	Cacnb1 Links NCBI RGD Ensembl Show fit	calcium voltage-gated channel auxiliary subunit beta 1
chr14_+_42401706 Show fit	0.03	ENSRNOT00000090148	Bend4 Links NCBI RGD Ensembl Show fit	BEN domain containing 4
chr1_+_164706276 Show fit	0.03	ENSRNOT00000024311	Olr36 Links NCBI RGD Ensembl Show fit	olfactory receptor 36
chr8_+_130350510 Show fit	0.03	ENSRNOT00000073376	Ss18l2 Links NCBI RGD Ensembl Show fit	SS18 like 2
chr4_-_85329362 Show fit	0.03	ENSRNOT00000014925	Crhr2 Links NCBI RGD Ensembl Show fit	corticotropin releasing hormone receptor 2
chr8_-_11887799 Show fit	0.03	ENSRNOT00000072420	Jrkl Links NCBI RGD Ensembl Show fit	JRK-like
chr6_-_33691301 Show fit	0.03	ENSRNOT00000008008	Rhob Links NCBI RGD Ensembl Show fit	ras homolog family member B
chr10_+_103874383 Show fit	0.03	ENSRNOT00000038935	Otop2 Links NCBI RGD Ensembl Show fit	otopetrin 2
chr5_-_7465510 Show fit	0.03	ENSRNOT00000066254	RGD1564053 Links NCBI RGD Ensembl Show fit	similar to hypothetical protein
chr4_-_132740938 Show fit	0.03	ENSRNOT00000007185	Rybp Links NCBI RGD Ensembl Show fit	RING1 and YY1 binding protein
chr10_+_84119884 Show fit	0.02	ENSRNOT00000009951	Hoxb9 Links NCBI RGD Ensembl Show fit	homeo box B9
chrX_+_50599060 Show fit	0.02	ENSRNOT00000058420	AABR07038477.1 Links NCBI RGD Ensembl Show fit
chr1_+_264893162 Show fit	0.02	ENSRNOT00000021714	Tlx1 Links NCBI RGD Ensembl Show fit	T-cell leukemia, homeobox 1
chr13_-_98023829 Show fit	0.02	ENSRNOT00000075426	Kif28p Links NCBI RGD Ensembl Show fit	kinesin family member 28, pseudogene
chr10_-_8498422 Show fit	0.02	ENSRNOT00000082332	Rbfox1 Links NCBI RGD Ensembl Show fit	RNA binding protein, fox-1 homolog 1
chr16_-_32299542 Show fit	0.02	ENSRNOT00000072321	AABR07025299.1 Links NCBI RGD Ensembl Show fit
chr7_+_78649875 Show fit	0.02	ENSRNOT00000006243	Dcstamp Links NCBI RGD Ensembl Show fit	dendrocyte expressed seven transmembrane protein
chrX_+_111396995 Show fit	0.02	ENSRNOT00000087634	Pih1d3 Links NCBI RGD Ensembl Show fit	PIH1 domain containing 3
chr13_-_50514151 Show fit	0.02	ENSRNOT00000003951	Ren Links NCBI RGD Ensembl Show fit	renin
chr1_-_140860882 Show fit	0.02	ENSRNOT00000067889 ENSRNOT00000024253 ENSRNOT00000079100	Mfge8 Links NCBI RGD Ensembl Show fit	milk fat globule-EGF factor 8 protein
chr20_+_22060224 Show fit	0.02	ENSRNOT00000057992	Zfp365 Links NCBI RGD Ensembl Show fit	zinc finger protein 365
chr14_-_8510138 Show fit	0.02	ENSRNOT00000080758	Arhgap24 Links NCBI RGD Ensembl Show fit	Rho GTPase activating protein 24
chr8_+_119228612 Show fit	0.02	ENSRNOT00000078439 ENSRNOT00000043737	Lrrc2 Links NCBI RGD Ensembl Show fit	leucine rich repeat containing 2
chr13_-_36290531 Show fit	0.02	ENSRNOT00000071388	Steap3 Links NCBI RGD Ensembl Show fit	STEAP3 metalloreductase
chr20_-_27083410 Show fit	0.02	ENSRNOT00000000432	Atoh7 Links NCBI RGD Ensembl Show fit	atonal bHLH transcription factor 7
chr2_-_96032722 Show fit	0.02	ENSRNOT00000015746	LOC100360846 Links NCBI RGD Ensembl Show fit	proteasome subunit beta type 6-like
chr20_-_25826658 Show fit	0.01	ENSRNOT00000057950 ENSRNOT00000084660	Ctnna3 Links NCBI RGD Ensembl Show fit	catenin alpha 3
chr1_+_79754587 Show fit	0.01	ENSRNOT00000083211	Micb Links NCBI RGD Ensembl Show fit	MHC class I polypeptide-related sequence B
chr18_-_24823837 Show fit	0.01	ENSRNOT00000021405 ENSRNOT00000090390	Myo7b Links NCBI RGD Ensembl Show fit	myosin VIIb
chr9_+_53013413 Show fit	0.01	ENSRNOT00000005313	Ankar Links NCBI RGD Ensembl Show fit	ankyrin and armadillo repeat containing
chr4_-_151516894 Show fit	0.01	ENSRNOT00000011044	Wnt5b Links NCBI RGD Ensembl Show fit	wingless-type MMTV integration site family, member 5B
chr16_-_31301880 Show fit	0.01	ENSRNOT00000084847 ENSRNOT00000083943	AABR07025272.1 Links NCBI RGD Ensembl Show fit
chr20_+_26999795 Show fit	0.01	ENSRNOT00000057872	Mypn Links NCBI RGD Ensembl Show fit	myopalladin
chr2_+_31378743 Show fit	0.01	ENSRNOT00000050384	AABR07007853.1 Links NCBI RGD Ensembl Show fit
chr16_-_69280109 Show fit	0.01	ENSRNOT00000058595	AABR07026240.1 Links NCBI RGD Ensembl Show fit
chrX_+_29520263 Show fit	0.01	ENSRNOT00000037047	Saxo1 Links NCBI RGD Ensembl Show fit	stabilizer of axonemal microtubules 1
chr10_-_78993045 Show fit	0.01	ENSRNOT00000043005	LOC100363469 Links NCBI RGD Ensembl Show fit	ribosomal protein S24-like
chr2_-_259382765 Show fit	0.01	ENSRNOT00000091407	St6galnac3 Links NCBI RGD Ensembl Show fit	ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 3
chr6_-_25507073 Show fit	0.01	ENSRNOT00000061176	Plb1 Links NCBI RGD Ensembl Show fit	phospholipase B1
chrX_+_136460215 Show fit	0.01	ENSRNOT00000093538	Arhgap36 Links NCBI RGD Ensembl Show fit	Rho GTPase activating protein 36
chr10_-_81942188 Show fit	0.01	ENSRNOT00000003784	Wfikkn2 Links NCBI RGD Ensembl Show fit	WAP, follistatin/kazal, immunoglobulin, kunitz and netrin domain containing 2
chr1_+_41323194 Show fit	0.01	ENSRNOT00000026350	Esr1 Links NCBI RGD Ensembl Show fit	estrogen receptor 1
chr2_-_120316600 Show fit	0.01	ENSRNOT00000084521	Ccdc39 Links NCBI RGD Ensembl Show fit	coiled-coil domain containing 39
chrX_+_119390013 Show fit	0.01	ENSRNOT00000074269	Agtr2 Links NCBI RGD Ensembl Show fit	angiotensin II receptor, type 2
chr7_-_29171783 Show fit	0.01	ENSRNOT00000079235	Mybpc1 Links NCBI RGD Ensembl Show fit	myosin binding protein C, slow type
chr10_+_56524468 Show fit	0.01	ENSRNOT00000022041	Gps2 Links NCBI RGD Ensembl Show fit	G protein pathway suppressor 2
chr16_+_22361998 Show fit	0.00	ENSRNOT00000016193	Slc18a1 Links NCBI RGD Ensembl Show fit	solute carrier family 18 member A1
chr9_+_42315682 Show fit	0.00	ENSRNOT00000071995	AABR07067388.1 Links NCBI RGD Ensembl Show fit
chr16_+_8207223 Show fit	0.00	ENSRNOT00000026751	Oxnad1 Links NCBI RGD Ensembl Show fit	oxidoreductase NAD-binding domain containing 1
chr18_+_59096643 Show fit	0.00	ENSRNOT00000025325	Wdr7 Links NCBI RGD Ensembl Show fit	WD repeat domain 7
chr1_+_201055644 Show fit	0.00	ENSRNOT00000054937 ENSRNOT00000047161	Tacc2 Links NCBI RGD Ensembl Show fit	transforming, acidic coiled-coil containing protein 2
chr16_-_29936307 Show fit	0.00	ENSRNOT00000088707	Ddx60 Links NCBI RGD Ensembl Show fit	DEAD (Asp-Glu-Ala-Asp) box polypeptide 60
chr16_-_74864816 Show fit	0.00	ENSRNOT00000017164	Alg11 Links NCBI RGD Ensembl Show fit	ALG11, alpha-1,2-mannosyltransferase

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Gene overrepresentation in biological process category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.0	GO:0021539	pulmonary myocardium development(GO:0003350) subthalamus development(GO:0021539) left lung morphogenesis(GO:0060460) pulmonary vein morphogenesis(GO:0060577)