ISMARA results: Nr3c2

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GSE49485: Hypoxia transcriptome sequencing of rat brain.

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Results for Nr3c2

Z-value: 1.11

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Transcription factors associated with Nr3c2

Gene Symbol	Gene ID	Gene Info
Nr3c2 NCBI RGD Ensembl	ENSRNOG00000034007	nuclear receptor subfamily 3, group C, member 2

Activity-expression correlation:

Gene	Promoter	Pearson corr. coef.	P-value	Plot
Nr3c2	rn6_v1_chr19_-_34752695_34752695	0.58	3.0e-01	Click!

Activity profile of Nr3c2 motif

Sorted Z-values of Nr3c2 motif

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Promoter	Log-likelihood	Transcript	Gene
chr15_-_42271443 Show fit	0.71	ENSRNOT00000085508	AABR07018132.1 NCBI RGD Ensembl Show fit
chr19_+_27603307 Show fit	0.69	ENSRNOT00000074702	AABR07043347.1 NCBI RGD Ensembl Show fit
chr2_+_89254154 Show fit	0.68	ENSRNOT00000073391	AABR07009221.1 NCBI RGD Ensembl Show fit
chr3_-_76012929 Show fit	0.64	ENSRNOT00000085199	AC111632.2 NCBI RGD Ensembl Show fit
chr14_-_43855745 Show fit	0.64	ENSRNOT00000083155	AC112624.1 NCBI RGD Ensembl Show fit
chr3_+_116072294 Show fit	0.63	ENSRNOT00000071786	AABR07053613.1 NCBI RGD Ensembl Show fit
chr19_+_24655626 Show fit	0.63	ENSRNOT00000086690	AC102976.1 NCBI RGD Ensembl Show fit
chr3_+_95614562 Show fit	0.63	ENSRNOT00000079990	AABR07053179.1 NCBI RGD Ensembl Show fit
chr6_+_54438436 Show fit	0.63	ENSRNOT00000091972	AABR07063893.1 NCBI RGD Ensembl Show fit
chr2_-_167607919 Show fit	0.62	ENSRNOT00000089083	AABR07011733.1 NCBI RGD Ensembl Show fit

Showing 1 to 10 of 48 entries

Network of associatons between targets according to the STRING database.

First level regulatory network of Nr3c2

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

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Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.5	GO:0007026	negative regulation of microtubule depolymerization(GO:0007026)
0.1	0.4	GO:0032197	transposition, RNA-mediated(GO:0032197)
0.0	0.4	GO:0014850	response to muscle activity(GO:0014850)
0.0	0.3	GO:0021759	globus pallidus development(GO:0021759)
0.1	0.2	GO:0060166	olfactory pit development(GO:0060166)
0.0	0.2	GO:0098914	membrane repolarization during atrial cardiac muscle cell action potential(GO:0098914)
0.0	0.2	GO:0021869	forebrain ventricular zone progenitor cell division(GO:0021869)
0.0	0.1	GO:1902414	protein localization to cell junction(GO:1902414)
0.0	0.0	GO:0015811	L-cystine transport(GO:0015811)
0.0	0.0	GO:0042496	detection of diacyl bacterial lipopeptide(GO:0042496) detection of bacterial lipopeptide(GO:0070340)

Showing 1 to 10 of 10 entries

Gene overrepresentation in cellular component category:

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Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.3	GO:0097442	CA3 pyramidal cell dendrite(GO:0097442)
0.0	0.3	GO:0048188	Set1C/COMPASS complex(GO:0048188)
0.1	0.2	GO:0046691	intracellular canaliculus(GO:0046691)
0.0	0.0	GO:0035355	Toll-like receptor 2-Toll-like receptor 6 protein complex(GO:0035355)

Showing 1 to 4 of 4 entries

Gene overrepresentation in molecular function category:

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Total log-likelihood	Term	Description
0.3	GO:0001206	transcriptional repressor activity, RNA polymerase II distal enhancer sequence-specific binding(GO:0001206)
0.3	GO:0002162	dystroglycan binding(GO:0002162)
0.3	GO:0042800	histone methyltransferase activity (H3-K4 specific)(GO:0042800)
0.2	GO:0086089	voltage-gated potassium channel activity involved in atrial cardiac muscle cell action potential repolarization(GO:0086089)
0.1	GO:0008467	[heparan sulfate]-glucosamine 3-sulfotransferase 1 activity(GO:0008467)
0.0	GO:0015184	L-cystine transmembrane transporter activity(GO:0015184)
0.0	GO:0035663	Toll-like receptor 2 binding(GO:0035663) diacyl lipopeptide binding(GO:0042498)

Showing 1 to 7 of 7 entries

Results for Nr3c2

Z-value: 1.11

Motif logo

Transcription factors associated with Nr3c2

Activity-expression correlation:

Activity profile of Nr3c2 motif

Sorted Z-values of Nr3c2 motif

Top targets:

Network of associatons between targets according to the STRING database.

First level regulatory network of Nr3c2

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Gene overrepresentation in cellular component category:

Gene overrepresentation in molecular function category: