GSE49485: Hypoxia transcriptome sequencing of rat brain.

• Motif significance table
• Sample table
• Mean activities
• All promoters sorted by FOV

• Activity table
• Activity delta table
• Regulatory interactions
• Motifs sorted by significance
• Expression table
• Download the whole report

Gene Symbol	Gene ID	Gene Info
Fosb Links NCBI RGD Ensembl	ENSRNOG00000046667	FosB proto-oncogene, AP-1 transcription factor subunit

Gene	Promoter	Pearson corr. coef.	P-value	Plot
Fosb	rn6_v1_chr1_-_80221710_80221710	0.28	6.5e-01	Click!

Promoter	Log-likelihood	Transcript	Gene	Gene Info
chr2_+_204886202 Show fit	0.06	ENSRNOT00000022200	Ngf Links NCBI RGD Ensembl Show fit	nerve growth factor
chr10_-_90312386 Show fit	0.05	ENSRNOT00000028445	Slc4a1 Links NCBI RGD Ensembl Show fit	solute carrier family 4 member 1
chr5_+_161889342 Show fit	0.05	ENSRNOT00000040481	LOC100362684 Links NCBI RGD Ensembl Show fit	ribosomal protein S20-like
chr5_-_16706909 Show fit	0.05	ENSRNOT00000011314	Rps20 Links NCBI RGD Ensembl Show fit	ribosomal protein S20
chr20_+_5040337 Show fit	0.04	ENSRNOT00000068435	Clic1 Links NCBI RGD Ensembl Show fit	chloride intracellular channel 1
chr5_+_135687538 Show fit	0.04	ENSRNOT00000091664	AC126292.2 Links NCBI RGD Ensembl Show fit
chr20_+_295250 Show fit	0.03	ENSRNOT00000000955	Clic2 Links NCBI RGD Ensembl Show fit	chloride intracellular channel 2
chr15_-_34444244 Show fit	0.03	ENSRNOT00000027612	Cideb Links NCBI RGD Ensembl Show fit	cell death-inducing DFFA-like effector b
chrX_-_142248369 Show fit	0.02	ENSRNOT00000091330	Fgf13 Links NCBI RGD Ensembl Show fit	fibroblast growth factor 13
chr10_+_11338306 Show fit	0.02	ENSRNOT00000033695	LOC100910875 Links NCBI RGD Ensembl Show fit	protein FAM100A-like
chr3_+_22964230 Show fit	0.02	ENSRNOT00000041813	LOC100362149 Links NCBI RGD Ensembl Show fit	ribosomal protein S20-like
chr2_-_28799266 Show fit	0.02	ENSRNOT00000089293	Tmem171 Links NCBI RGD Ensembl Show fit	transmembrane protein 171
chr4_-_119148358 Show fit	0.02	ENSRNOT00000012218	Gkn1 Links NCBI RGD Ensembl Show fit	gastrokine 1
chr4_-_131694755 Show fit	0.02	ENSRNOT00000013271	Foxp1 Links NCBI RGD Ensembl Show fit	forkhead box P1
chr18_+_81821127 Show fit	0.02	ENSRNOT00000058199	Fbxo15 Links NCBI RGD Ensembl Show fit	F-box protein 15
chr10_-_87232723 Show fit	0.02	ENSRNOT00000015150	Krt25 Links NCBI RGD Ensembl Show fit	keratin 25
chr10_-_87067456 Show fit	0.02	ENSRNOT00000014163	Ccr7 Links NCBI RGD Ensembl Show fit	C-C motif chemokine receptor 7
chr4_+_176994129 Show fit	0.01	ENSRNOT00000018734	Cmas Links NCBI RGD Ensembl Show fit	cytidine monophosphate N-acetylneuraminic acid synthetase
chr9_+_20251521 Show fit	0.01	ENSRNOT00000005535	LOC100911625 Links NCBI RGD Ensembl Show fit	gamma-enolase-like
chr1_-_256813711 Show fit	0.01	ENSRNOT00000021055	Rbp4 Links NCBI RGD Ensembl Show fit	retinol binding protein 4
chr4_-_157294047 Show fit	0.01	ENSRNOT00000005601	Eno2 Links NCBI RGD Ensembl Show fit	enolase 2
chr10_+_35537977 Show fit	0.01	ENSRNOT00000071917	Rnf130 Links NCBI RGD Ensembl Show fit	ring finger protein 130
chr10_-_88036040 Show fit	0.01	ENSRNOT00000018851	Krt13 Links NCBI RGD Ensembl Show fit	keratin 13
chr2_-_149417212 Show fit	0.01	ENSRNOT00000018573	Gpr87 Links NCBI RGD Ensembl Show fit	G protein-coupled receptor 87
chr10_-_88152064 Show fit	0.01	ENSRNOT00000019477	Krt16 Links NCBI RGD Ensembl Show fit	keratin 16
chr2_-_187863503 Show fit	0.01	ENSRNOT00000093036 ENSRNOT00000026705 ENSRNOT00000082174	Lmna Links NCBI RGD Ensembl Show fit	lamin A/C
chr10_-_71382058 Show fit	0.01	ENSRNOT00000043148	Dusp14 Links NCBI RGD Ensembl Show fit	dual specificity phosphatase 14
chr8_+_104106740 Show fit	0.01	ENSRNOT00000015015	Tfdp2 Links NCBI RGD Ensembl Show fit	transcription factor Dp-2
chr4_+_7314369 Show fit	0.01	ENSRNOT00000029724	Atg9b Links NCBI RGD Ensembl Show fit	autophagy related 9B
chr2_+_144861455 Show fit	0.01	ENSRNOT00000093284 ENSRNOT00000019748 ENSRNOT00000072110	Dclk1 Links NCBI RGD Ensembl Show fit	doublecortin-like kinase 1
chr8_+_5522739 Show fit	0.01	ENSRNOT00000011507	Mmp13 Links NCBI RGD Ensembl Show fit	matrix metallopeptidase 13
chr6_-_71199110 Show fit	0.01	ENSRNOT00000081883	Prkd1 Links NCBI RGD Ensembl Show fit	protein kinase D1
chr8_+_5676665 Show fit	0.01	ENSRNOT00000012310	Mmp3 Links NCBI RGD Ensembl Show fit	matrix metallopeptidase 3
chr7_+_23854846 Show fit	0.01	ENSRNOT00000037290	Bpifc Links NCBI RGD Ensembl Show fit	BPI fold containing family C
chr12_-_2568382 Show fit	0.01	ENSRNOT00000035142	Lrrc8e Links NCBI RGD Ensembl Show fit	leucine rich repeat containing 8 family, member E
chr2_-_45518502 Show fit	0.01	ENSRNOT00000014627	Hspb3 Links NCBI RGD Ensembl Show fit	heat shock protein family B (small) member 3
chr19_+_52077501 Show fit	0.01	ENSRNOT00000079240	Osgin1 Links NCBI RGD Ensembl Show fit	oxidative stress induced growth inhibitor 1
chr1_+_199555722 Show fit	0.01	ENSRNOT00000054983	Itgax Links NCBI RGD Ensembl Show fit	integrin subunit alpha X
chr4_+_9882904 Show fit	0.01	ENSRNOT00000016909	Dnajc2 Links NCBI RGD Ensembl Show fit	DnaJ heat shock protein family (Hsp40) member C2
chr13_+_51384389 Show fit	0.00	ENSRNOT00000087025	Kdm5b Links NCBI RGD Ensembl Show fit	lysine demethylase 5B
chr4_+_71740532 Show fit	0.00	ENSRNOT00000023537	Zyx Links NCBI RGD Ensembl Show fit	zyxin
chr20_-_2103864 Show fit	0.00	ENSRNOT00000001014	Rnf39 Links NCBI RGD Ensembl Show fit	ring finger protein 39
chr1_+_20332371 Show fit	0.00	ENSRNOT00000037259	Tmem200a Links NCBI RGD Ensembl Show fit	transmembrane protein 200A
chr11_+_87435185 Show fit	0.00	ENSRNOT00000002558	P2rx6 Links NCBI RGD Ensembl Show fit	purinergic receptor P2X 6
chr7_-_143863186 Show fit	0.00	ENSRNOT00000017096	Rarg Links NCBI RGD Ensembl Show fit	retinoic acid receptor, gamma
chr1_-_31122093 Show fit	0.00	ENSRNOT00000016712	NEWGENE_1307525 Links NCBI RGD Ensembl Show fit	SOGA family member 3
chr17_-_55346279 Show fit	0.00	ENSRNOT00000025037	Svil Links NCBI RGD Ensembl Show fit	supervillin
chr6_+_42092467 Show fit	0.00	ENSRNOT00000060499	E2f6 Links NCBI RGD Ensembl Show fit	E2F transcription factor 6
chr19_+_41631715 Show fit	0.00	ENSRNOT00000022749	Chst4 Links NCBI RGD Ensembl Show fit	carbohydrate sulfotransferase 4

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Gene overrepresentation in biological process category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.1	GO:0010037	response to carbon dioxide(GO:0010037)

Gene overrepresentation in molecular function category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.1	GO:0005163	nerve growth factor receptor binding(GO:0005163)