GSE49485: Hypoxia transcriptome sequencing of rat brain.

• Motif significance table
• Sample table
• Mean activities
• All promoters sorted by FOV

• Activity table
• Activity delta table
• Regulatory interactions
• Motifs sorted by significance
• Expression table
• Download the whole report

Gene Symbol	Gene ID	Gene Info
Pou3f4 Links NCBI RGD Ensembl	ENSRNOG00000002784	POU class 3 homeobox 4

Gene	Promoter	Pearson corr. coef.	P-value	Plot
Pou3f4	rn6_v1_chrX_+_82143789_82143789	0.85	6.7e-02	Click!

Promoter	Log-likelihood	Transcript	Gene	Gene Info
chr7_-_124929025 Show fit	0.16	ENSRNOT00000015447	Efcab6 Links NCBI RGD Ensembl Show fit	EF-hand calcium binding domain 6
chr6_+_106052212 Show fit	0.15	ENSRNOT00000010626	Sipa1l1 Links NCBI RGD Ensembl Show fit	signal-induced proliferation-associated 1 like 1
chr2_-_104461863 Show fit	0.14	ENSRNOT00000016953	Crh Links NCBI RGD Ensembl Show fit	corticotropin releasing hormone
chr5_-_153840178 Show fit	0.13	ENSRNOT00000025075	Nipal3 Links NCBI RGD Ensembl Show fit	NIPA-like domain containing 3
chr6_+_29518416 Show fit	0.12	ENSRNOT00000078660	AABR07063346.1 Links NCBI RGD Ensembl Show fit
chr1_+_151439409 Show fit	0.11	ENSRNOT00000022060 ENSRNOT00000050639	Grm5 Links NCBI RGD Ensembl Show fit	glutamate metabotropic receptor 5
chr7_-_93502571 Show fit	0.11	ENSRNOT00000077033 ENSRNOT00000076080	Samd12 Links NCBI RGD Ensembl Show fit	sterile alpha motif domain containing 12
chr7_+_120923274 Show fit	0.11	ENSRNOT00000049247	Gtpbp1 Links NCBI RGD Ensembl Show fit	GTP binding protein 1
chr16_-_81880502 Show fit	0.11	ENSRNOT00000079096	Mcf2l Links NCBI RGD Ensembl Show fit	MCF.2 cell line derived transforming sequence-like
chr2_+_22909569 Show fit	0.11	ENSRNOT00000073871	Homer1 Links NCBI RGD Ensembl Show fit	homer scaffolding protein 1
chr7_-_120518653 Show fit	0.11	ENSRNOT00000016362	Baiap2l2 Links NCBI RGD Ensembl Show fit	BAI1-associated protein 2-like 2
chr14_-_55081551 Show fit	0.11	ENSRNOT00000049245	Pcdh7 Links NCBI RGD Ensembl Show fit	protocadherin 7
chr3_+_162357356 Show fit	0.10	ENSRNOT00000030119	Eya2 Links NCBI RGD Ensembl Show fit	EYA transcriptional coactivator and phosphatase 2
chr5_-_161875362 Show fit	0.10	ENSRNOT00000078237	Prdm2 Links NCBI RGD Ensembl Show fit	PR/SET domain 2
chr3_+_8928534 Show fit	0.10	ENSRNOT00000088509 ENSRNOT00000065300	Miga2 Links NCBI RGD Ensembl Show fit	mitoguardin 2
chr1_+_217151166 Show fit	0.10	ENSRNOT00000071484	Shank2 Links NCBI RGD Ensembl Show fit	SH3 and multiple ankyrin repeat domains 2
chr10_-_67285617 Show fit	0.10	ENSRNOT00000019044	Utp6 Links NCBI RGD Ensembl Show fit	UTP6 small subunit processome component
chr1_+_167051209 Show fit	0.10	ENSRNOT00000055249	Numa1 Links NCBI RGD Ensembl Show fit	nuclear mitotic apparatus protein 1
chr3_-_107760550 Show fit	0.09	ENSRNOT00000077091 ENSRNOT00000051638	Meis2 Links NCBI RGD Ensembl Show fit	Meis homeobox 2
chr9_+_119517101 Show fit	0.09	ENSRNOT00000020476	Lpin2 Links NCBI RGD Ensembl Show fit	lipin 2
chr11_-_90406797 Show fit	0.09	ENSRNOT00000073049	Snai2 Links NCBI RGD Ensembl Show fit	snail family transcriptional repressor 2
chr3_+_72540538 Show fit	0.09	ENSRNOT00000012379	Aplnr Links NCBI RGD Ensembl Show fit	apelin receptor
chr1_-_49844547 Show fit	0.09	ENSRNOT00000086127 ENSRNOT00000077423 ENSRNOT00000089439 ENSRNOT00000090521	AABR07001519.1 Links NCBI RGD Ensembl Show fit
chr11_+_82194657 Show fit	0.09	ENSRNOT00000002445	Etv5 Links NCBI RGD Ensembl Show fit	ets variant 5
chr7_+_121408829 Show fit	0.09	ENSRNOT00000023434	Mgat3 Links NCBI RGD Ensembl Show fit	mannosyl (beta-1,4-)-glycoprotein beta-1,4-N-acetylglucosaminyltransferase
chr6_+_44230985 Show fit	0.09	ENSRNOT00000005858	Kidins220 Links NCBI RGD Ensembl Show fit	kinase D-interacting substrate 220
chr1_+_156552328 Show fit	0.09	ENSRNOT00000055401	Dlg2 Links NCBI RGD Ensembl Show fit	discs large MAGUK scaffold protein 2
chr9_+_2190915 Show fit	0.08	ENSRNOT00000077417	Satb1 Links NCBI RGD Ensembl Show fit	SATB homeobox 1
chr16_-_9658484 Show fit	0.08	ENSRNOT00000065216	Mapk8 Links NCBI RGD Ensembl Show fit	mitogen-activated protein kinase 8
chr1_-_88558696 Show fit	0.08	ENSRNOT00000038642	AABR07002896.1 Links NCBI RGD Ensembl Show fit
chr7_+_133400485 Show fit	0.08	ENSRNOT00000006219	Cntn1 Links NCBI RGD Ensembl Show fit	contactin 1
chr5_+_116420690 Show fit	0.08	ENSRNOT00000087089	Nfia Links NCBI RGD Ensembl Show fit	nuclear factor I/A
chr10_+_54155876 Show fit	0.08	ENSRNOT00000072855	Gas7 Links NCBI RGD Ensembl Show fit	growth arrest specific 7
chr20_-_31598118 Show fit	0.07	ENSRNOT00000046537	Col13a1 Links NCBI RGD Ensembl Show fit	collagen type XIII alpha 1 chain
chr10_+_71536533 Show fit	0.07	ENSRNOT00000088138	Acaca Links NCBI RGD Ensembl Show fit	acetyl-CoA carboxylase alpha
chr3_-_94418711 Show fit	0.07	ENSRNOT00000089554	Hipk3 Links NCBI RGD Ensembl Show fit	homeodomain interacting protein kinase 3
chrX_+_88298266 Show fit	0.07	ENSRNOT00000041508	AABR07039936.1 Links NCBI RGD Ensembl Show fit
chr5_+_27326762 Show fit	0.07	ENSRNOT00000066191	Runx1t1 Links NCBI RGD Ensembl Show fit	RUNX1 translocation partner 1
chr18_-_70924708 Show fit	0.07	ENSRNOT00000025257	Lipg Links NCBI RGD Ensembl Show fit	lipase G, endothelial type
chr5_+_145257714 Show fit	0.06	ENSRNOT00000019214	Dlgap3 Links NCBI RGD Ensembl Show fit	DLG associated protein 3
chr1_+_65781547 Show fit	0.06	ENSRNOT00000026204	Zfp329 Links NCBI RGD Ensembl Show fit	zinc finger protein 329
chr17_-_43675934 Show fit	0.06	ENSRNOT00000081345	Hist1h1t Links NCBI RGD Ensembl Show fit	histone cluster 1 H1 family member t
chr2_-_147693082 Show fit	0.06	ENSRNOT00000022507	Wwtr1 Links NCBI RGD Ensembl Show fit	WW domain containing transcription regulator 1
chr15_-_55424024 Show fit	0.06	ENSRNOT00000077733	Nudt15 Links NCBI RGD Ensembl Show fit	nudix hydrolase 15
chr6_+_123034304 Show fit	0.06	ENSRNOT00000078938	Cpg1 Links NCBI RGD Ensembl Show fit	candidate plasticity gene 1
chr1_-_6970040 Show fit	0.05	ENSRNOT00000016273	Utrn Links NCBI RGD Ensembl Show fit	utrophin
chr18_+_30527705 Show fit	0.05	ENSRNOT00000027168	Pcdhb14 Links NCBI RGD Ensembl Show fit	protocadherin beta 14
chr8_-_63291966 Show fit	0.05	ENSRNOT00000077762	AABR07070278.1 Links NCBI RGD Ensembl Show fit
chr8_+_82043403 Show fit	0.05	ENSRNOT00000091789	Myo5a Links NCBI RGD Ensembl Show fit	myosin VA
chr18_+_30398113 Show fit	0.05	ENSRNOT00000027206	Pcdhb5 Links NCBI RGD Ensembl Show fit	protocadherin beta 5
chr1_+_236031988 Show fit	0.05	ENSRNOT00000016164	Pcsk5 Links NCBI RGD Ensembl Show fit	proprotein convertase subtilisin/kexin type 5
chr11_+_20474483 Show fit	0.05	ENSRNOT00000082417 ENSRNOT00000002895	Ncam2 Links NCBI RGD Ensembl Show fit	neural cell adhesion molecule 2
chr3_-_150960030 Show fit	0.05	ENSRNOT00000024714	Ncoa6 Links NCBI RGD Ensembl Show fit	nuclear receptor coactivator 6
chr7_+_28956512 Show fit	0.05	ENSRNOT00000006946	Gnptab Links NCBI RGD Ensembl Show fit	N-acetylglucosamine-1-phosphate transferase, alpha and beta subunits
chr5_-_12199283 Show fit	0.05	ENSRNOT00000007769	Pcmtd1 Links NCBI RGD Ensembl Show fit	protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1
chr5_-_57947183 Show fit	0.05	ENSRNOT00000060642	Fam219a Links NCBI RGD Ensembl Show fit	family with sequence similarity 219, member A
chr12_-_22417980 Show fit	0.05	ENSRNOT00000072208	Ephb4 Links NCBI RGD Ensembl Show fit	EPH receptor B4
chrX_+_78042859 Show fit	0.04	ENSRNOT00000003286	Lpar4 Links NCBI RGD Ensembl Show fit	lysophosphatidic acid receptor 4
chr13_-_83425641 Show fit	0.04	ENSRNOT00000063870	Tbx19 Links NCBI RGD Ensembl Show fit	T-box 19
chr12_-_9607168 Show fit	0.04	ENSRNOT00000001260	Gsx1 Links NCBI RGD Ensembl Show fit	GS homeobox 1
chr15_+_12827707 Show fit	0.04	ENSRNOT00000012452	Fezf2 Links NCBI RGD Ensembl Show fit	Fez family zinc finger 2
chr11_+_42259761 Show fit	0.04	ENSRNOT00000047310	Epha6 Links NCBI RGD Ensembl Show fit	Eph receptor A6
chrX_+_11648989 Show fit	0.04	ENSRNOT00000041003	Bcor Links NCBI RGD Ensembl Show fit	BCL6 co-repressor
chr16_+_32457521 Show fit	0.04	ENSRNOT00000083579	Clcn3 Links NCBI RGD Ensembl Show fit	chloride voltage-gated channel 3
chr2_+_12516702 Show fit	0.04	ENSRNOT00000050072	Tmem161b Links NCBI RGD Ensembl Show fit	transmembrane protein 161B
chr6_-_135251073 Show fit	0.04	ENSRNOT00000088986	Mok Links NCBI RGD Ensembl Show fit	MOK protein kinase
chr1_+_127604197 Show fit	0.04	ENSRNOT00000018463	Lins1 Links NCBI RGD Ensembl Show fit	lines homolog 1
chr2_+_41467064 Show fit	0.04	ENSRNOT00000073231	AABR07008066.2 Links NCBI RGD Ensembl Show fit
chr1_-_166988062 Show fit	0.04	ENSRNOT00000039564	Lrtomt Links NCBI RGD Ensembl Show fit	leucine rich transmembrane and O-methyltransferase domain containing
chr2_+_182723854 Show fit	0.04	ENSRNOT00000012658	Sfrp2 Links NCBI RGD Ensembl Show fit	secreted frizzled-related protein 2
chr17_+_26478315 Show fit	0.03	ENSRNOT00000021669	Slc35b3 Links NCBI RGD Ensembl Show fit	solute carrier family 35 member B3
chr4_-_135069970 Show fit	0.03	ENSRNOT00000008221	Cntn3 Links NCBI RGD Ensembl Show fit	contactin 3
chr11_+_31640407 Show fit	0.03	ENSRNOT00000029985 ENSRNOT00000091472	Ifnar1 Links NCBI RGD Ensembl Show fit	interferon alpha and beta receptor subunit 1
chr5_-_16799776 Show fit	0.03	ENSRNOT00000011721	Plag1 Links NCBI RGD Ensembl Show fit	PLAG1 zinc finger
chr4_+_157125998 Show fit	0.03	ENSRNOT00000078349	C1r Links NCBI RGD Ensembl Show fit	complement C1r
chr5_+_63870432 Show fit	0.03	ENSRNOT00000007641	Stx17 Links NCBI RGD Ensembl Show fit	syntaxin 17
chr12_-_29743705 Show fit	0.03	ENSRNOT00000001185	Caln1 Links NCBI RGD Ensembl Show fit	calneuron 1
chr1_-_251387002 Show fit	0.03	ENSRNOT00000092063	Atad1 Links NCBI RGD Ensembl Show fit	ATPase family, AAA domain containing 1
chr7_-_140506925 Show fit	0.03	ENSRNOT00000083354	Kmt2d Links NCBI RGD Ensembl Show fit	lysine methyltransferase 2D
chr2_+_72006099 Show fit	0.03	ENSRNOT00000034044	Cdh12 Links NCBI RGD Ensembl Show fit	cadherin 12
chr9_-_81772851 Show fit	0.02	ENSRNOT00000032719	Usp37 Links NCBI RGD Ensembl Show fit	ubiquitin specific peptidase 37
chr5_-_58198782 Show fit	0.02	ENSRNOT00000023951	Ccl21 Links NCBI RGD Ensembl Show fit	C-C motif chemokine ligand 21
chr7_-_13108630 Show fit	0.02	ENSRNOT00000087038 ENSRNOT00000080491	Giot1 Links NCBI RGD Ensembl Show fit	gonadotropin inducible ovarian transcription factor 1
chr2_-_2779109 Show fit	0.02	ENSRNOT00000017098	Rfesd Links NCBI RGD Ensembl Show fit	Rieske (Fe-S) domain containing
chr10_-_88842233 Show fit	0.02	ENSRNOT00000026760	Stat3 Links NCBI RGD Ensembl Show fit	signal transducer and activator of transcription 3
chr6_+_102215603 Show fit	0.02	ENSRNOT00000014257	Plekhh1 Links NCBI RGD Ensembl Show fit	pleckstrin homology, MyTH4 and FERM domain containing H1
chr12_+_21981755 Show fit	0.02	ENSRNOT00000001871	LOC100910540 Links NCBI RGD Ensembl Show fit	7SK snRNA methylphosphate capping enzyme-like
chr9_+_19451630 Show fit	0.02	ENSRNOT00000065048	Enpp4 Links NCBI RGD Ensembl Show fit	ectonucleotide pyrophosphatase/phosphodiesterase 4
chr1_+_174702373 Show fit	0.02	ENSRNOT00000013733	Zfp143 Links NCBI RGD Ensembl Show fit	zinc finger protein 143
chr1_+_61733805 Show fit	0.02	ENSRNOT00000086029	LOC682206 Links NCBI RGD Ensembl Show fit	similar to Zinc finger protein 208
chr19_+_25120128 Show fit	0.02	ENSRNOT00000081243	Samd1 Links NCBI RGD Ensembl Show fit	sterile alpha motif domain containing 1
chr10_-_87300728 Show fit	0.02	ENSRNOT00000036023 ENSRNOT00000081709	Krt10 Links NCBI RGD Ensembl Show fit	keratin 10
chr3_-_26056818 Show fit	0.02	ENSRNOT00000044209	Lrp1b Links NCBI RGD Ensembl Show fit	LDL receptor related protein 1B
chr18_-_36322320 Show fit	0.02	ENSRNOT00000060260	Grxcr2 Links NCBI RGD Ensembl Show fit	glutaredoxin and cysteine rich domain containing 2
chr20_+_25990304 Show fit	0.02	ENSRNOT00000033980	Lrrtm3 Links NCBI RGD Ensembl Show fit	leucine rich repeat transmembrane neuronal 3
chr6_-_50941248 Show fit	0.02	ENSRNOT00000084533	Dus4l Links NCBI RGD Ensembl Show fit	dihydrouridine synthase 4-like
chr6_-_18351536 Show fit	0.01	ENSRNOT00000061588	Crnkl1 Links NCBI RGD Ensembl Show fit	crooked neck pre-mRNA splicing factor 1
chr17_+_1305016 Show fit	0.01	ENSRNOT00000025965	Ercc6l2 Links NCBI RGD Ensembl Show fit	ERCC excision repair 6 like 2
chr5_+_48313599 Show fit	0.01	ENSRNOT00000081825	Gabrr2 Links NCBI RGD Ensembl Show fit	gamma-aminobutyric acid type A receptor rho 2 subunit
chr15_-_71779033 Show fit	0.01	ENSRNOT00000017765	Pcdh20 Links NCBI RGD Ensembl Show fit	protocadherin 20
chr10_-_87335823 Show fit	0.01	ENSRNOT00000079297	Krt12 Links NCBI RGD Ensembl Show fit	keratin 12
chr10_-_13446135 Show fit	0.01	ENSRNOT00000084991	Kctd5 Links NCBI RGD Ensembl Show fit	potassium channel tetramerization domain containing 5
chr14_+_114152472 Show fit	0.01	ENSRNOT00000042965	Rtn4 Links NCBI RGD Ensembl Show fit	reticulon 4
chr19_-_11669578 Show fit	0.01	ENSRNOT00000026373	Gnao1 Links NCBI RGD Ensembl Show fit	G protein subunit alpha o1
chr6_+_7900972 Show fit	0.01	ENSRNOT00000006953 ENSRNOT00000068030	Dync2li1 Links NCBI RGD Ensembl Show fit	dynein cytoplasmic 2 light intermediate chain 1
chr5_+_126698582 Show fit	0.01	ENSRNOT00000012427	Cdcp2 Links NCBI RGD Ensembl Show fit	CUB domain containing protein 2
chr16_+_9486832 Show fit	0.00	ENSRNOT00000082208	Arhgap22 Links NCBI RGD Ensembl Show fit	Rho GTPase activating protein 22
chr5_-_156689415 Show fit	0.00	ENSRNOT00000083474	Pink1 Links NCBI RGD Ensembl Show fit	PTEN induced putative kinase 1
chr11_-_62128044 Show fit	0.00	ENSRNOT00000093141	Zbtb20 Links NCBI RGD Ensembl Show fit	zinc finger and BTB domain containing 20
chr16_-_48921242 Show fit	0.00	ENSRNOT00000041596	Cenpu Links NCBI RGD Ensembl Show fit	centromere protein U
chr13_-_82295123 Show fit	0.00	ENSRNOT00000090120	LOC498265 Links NCBI RGD Ensembl Show fit	similar to hypothetical protein FLJ10706
chr1_+_219329574 Show fit	0.00	ENSRNOT00000071109	Cabp2 Links NCBI RGD Ensembl Show fit	calcium binding protein 2
chr17_-_14679409 Show fit	0.00	ENSRNOT00000020704	Aspn Links NCBI RGD Ensembl Show fit	asporin
chr9_-_45558993 Show fit	0.00	ENSRNOT00000087866 ENSRNOT00000017714	Chst10 Links NCBI RGD Ensembl Show fit	carbohydrate sulfotransferase 10

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Gene overrepresentation in biological process category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.1	GO:0099553	trans-synaptic signaling by lipid, modulating synaptic transmission(GO:0099552) trans-synaptic signaling by endocannabinoid, modulating synaptic transmission(GO:0099553)
0.0	0.1	GO:0008628	hormone-mediated apoptotic signaling pathway(GO:0008628) negative regulation of glucagon secretion(GO:0070093)
0.0	0.1	GO:0070563	negative regulation of vitamin D receptor signaling pathway(GO:0070563)
0.0	0.1	GO:1902595	regulation of DNA replication origin binding(GO:1902595)
0.0	0.1	GO:0010982	regulation of high-density lipoprotein particle clearance(GO:0010982) positive regulation of lipoprotein particle clearance(GO:0010986)
0.0	0.1	GO:0044268	multicellular organismal protein metabolic process(GO:0044268) malonyl-CoA biosynthetic process(GO:2001295)
0.0	0.1	GO:0042078	germ-line stem cell division(GO:0042078) male germ-line stem cell asymmetric division(GO:0048133) germline stem cell asymmetric division(GO:0098728)
0.0	0.0	GO:0065001	specification of axis polarity(GO:0065001)
0.0	0.1	GO:0051643	endoplasmic reticulum localization(GO:0051643)
0.0	0.0	GO:2000040	sclerotome development(GO:0061056) regulation of midbrain dopaminergic neuron differentiation(GO:1904956) regulation of planar cell polarity pathway involved in axis elongation(GO:2000040) negative regulation of planar cell polarity pathway involved in axis elongation(GO:2000041)
0.0	0.1	GO:0042262	dGTP catabolic process(GO:0006203) DNA protection(GO:0042262)
0.0	0.1	GO:0016576	histone dephosphorylation(GO:0016576)
0.0	0.0	GO:2000523	regulation of aorta morphogenesis(GO:1903847) positive regulation of aorta morphogenesis(GO:1903849) regulation of T cell costimulation(GO:2000523) positive regulation of T cell costimulation(GO:2000525)
0.0	0.0	GO:0021797	forebrain anterior/posterior pattern specification(GO:0021797)

Gene overrepresentation in cellular component category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.1	GO:0045203	intrinsic component of cell outer membrane(GO:0031230) integral component of cell outer membrane(GO:0045203)
0.0	0.1	GO:0061673	mitotic spindle astral microtubule(GO:0061673)
0.0	0.1	GO:0042642	actomyosin, myosin complex part(GO:0042642)
0.0	0.1	GO:0034388	Pwp2p-containing subcomplex of 90S preribosome(GO:0034388)
0.0	0.1	GO:0071439	clathrin complex(GO:0071439)

Gene overrepresentation in molecular function category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.1	GO:0051431	corticotropin-releasing hormone receptor 2 binding(GO:0051431)
0.0	0.1	GO:0099583	neurotransmitter receptor activity involved in regulation of postsynaptic cytosolic calcium ion concentration(GO:0099583)
0.0	0.1	GO:0031802	type 5 metabotropic glutamate receptor binding(GO:0031802)
0.0	0.1	GO:0035539	8-oxo-7,8-dihydroguanosine triphosphate pyrophosphatase activity(GO:0008413) 8-oxo-7,8-dihydrodeoxyguanosine triphosphate pyrophosphatase activity(GO:0035539)
0.0	0.1	GO:0003989	acetyl-CoA carboxylase activity(GO:0003989)
0.0	0.0	GO:0003976	UDP-N-acetylglucosamine-lysosomal-enzyme N-acetylglucosaminephosphotransferase activity(GO:0003976)
0.0	0.0	GO:0072320	volume-sensitive chloride channel activity(GO:0072320)
0.0	0.0	GO:0004719	protein-L-isoaspartate (D-aspartate) O-methyltransferase activity(GO:0004719)
0.0	0.1	GO:0035033	histone deacetylase regulator activity(GO:0035033)
0.0	0.1	GO:0008970	phosphatidylcholine 1-acylhydrolase activity(GO:0008970)
0.0	0.0	GO:0019961	interferon binding(GO:0019961)
0.0	0.0	GO:0070915	lysophosphatidic acid binding(GO:0035727) lysophosphatidic acid receptor activity(GO:0070915)