GSE49485: Hypoxia transcriptome sequencing of rat brain.

• Motif significance table
• Sample table
• Mean activities
• All promoters sorted by FOV

• Activity table
• Activity delta table
• Regulatory interactions
• Motifs sorted by significance
• Expression table
• Download the whole report

Gene Symbol	Gene ID	Gene Info
T Links NCBI RGD Ensembl	ENSRNOG00000012229	T brachyury transcription factor

Gene	Promoter	Pearson corr. coef.	P-value	Plot
T	rn6_v1_chr1_-_52894832_52894832	0.20	7.4e-01	Click!

Promoter	Log-likelihood	Transcript	Gene	Gene Info
chr4_-_152883210 Show fit	0.22	ENSRNOT00000056200	Ccdc77 Links NCBI RGD Ensembl Show fit	coiled-coil domain containing 77
chr4_-_148845267 Show fit	0.16	ENSRNOT00000037397	Tmem72 Links NCBI RGD Ensembl Show fit	transmembrane protein 72
chr1_-_219422268 Show fit	0.12	ENSRNOT00000025092	Carns1 Links NCBI RGD Ensembl Show fit	carnosine synthase 1
chr8_-_46694613 Show fit	0.11	ENSRNOT00000084514	AC133265.1 Links NCBI RGD Ensembl Show fit
chr7_-_130120579 Show fit	0.10	ENSRNOT00000044376	Mapk12 Links NCBI RGD Ensembl Show fit	mitogen-activated protein kinase 12
chr2_-_23289266 Show fit	0.09	ENSRNOT00000061708	Bhmt2 Links NCBI RGD Ensembl Show fit	betaine-homocysteine S-methyltransferase 2
chr13_-_25262469 Show fit	0.09	ENSRNOT00000019921	Rnf152 Links NCBI RGD Ensembl Show fit	ring finger protein 152
chr8_+_72405748 Show fit	0.08	ENSRNOT00000023952	Car12 Links NCBI RGD Ensembl Show fit	carbonic anhydrase 12
chr9_-_20528879 Show fit	0.07	ENSRNOT00000085293	AABR07066871.3 Links NCBI RGD Ensembl Show fit
chr4_-_59014416 Show fit	0.07	ENSRNOT00000049811	RGD1561636 Links NCBI RGD Ensembl Show fit	similar to 60S ribosomal protein L38
chr10_+_55712043 Show fit	0.06	ENSRNOT00000010141	Aloxe3 Links NCBI RGD Ensembl Show fit	arachidonate lipoxygenase 3
chr15_+_34552410 Show fit	0.06	ENSRNOT00000027802	Khnyn Links NCBI RGD Ensembl Show fit	KH and NYN domain containing
chr1_-_214423881 Show fit	0.06	ENSRNOT00000025290	Pidd1 Links NCBI RGD Ensembl Show fit	p53-induced death domain protein 1
chr5_-_62186372 Show fit	0.06	ENSRNOT00000089789	Coro2a Links NCBI RGD Ensembl Show fit	coronin 2A
chr18_+_38847632 Show fit	0.06	ENSRNOT00000014916	LOC102554034 Links NCBI RGD Ensembl Show fit	ELMO domain-containing protein 2-like
chr7_-_47586137 Show fit	0.05	ENSRNOT00000006086	Tmtc2 Links NCBI RGD Ensembl Show fit	transmembrane and tetratricopeptide repeat containing 2
chr9_-_89193821 Show fit	0.05	ENSRNOT00000090881	Sphkap Links NCBI RGD Ensembl Show fit	SPHK1 interactor, AKAP domain containing
chr15_+_10120206 Show fit	0.05	ENSRNOT00000033048	Rarb Links NCBI RGD Ensembl Show fit	retinoic acid receptor, beta
chr20_-_27578244 Show fit	0.05	ENSRNOT00000000708	Fam26d Links NCBI RGD Ensembl Show fit	family with sequence similarity 26, member D
chr18_-_3662654 Show fit	0.05	ENSRNOT00000092854 ENSRNOT00000016167	Npc1 Links NCBI RGD Ensembl Show fit	NPC intracellular cholesterol transporter 1
chr14_-_16996962 Show fit	0.05	ENSRNOT00000091936	AC103535.1 Links NCBI RGD Ensembl Show fit
chr5_-_173233188 Show fit	0.04	ENSRNOT00000055343	Tmem88b Links NCBI RGD Ensembl Show fit	transmembrane protein 88B
chr2_-_9504134 Show fit	0.04	ENSRNOT00000076996	Adgrv1 Links NCBI RGD Ensembl Show fit	adhesion G protein-coupled receptor V1
chr8_-_58195884 Show fit	0.04	ENSRNOT00000010573	Acat1 Links NCBI RGD Ensembl Show fit	acetyl-CoA acetyltransferase 1
chr10_-_61772250 Show fit	0.04	ENSRNOT00000092338 ENSRNOT00000085394 ENSRNOT00000046110	Srr Links NCBI RGD Ensembl Show fit	serine racemase
chr1_-_282492912 Show fit	0.04	ENSRNOT00000047883	AABR07007130.1 Links NCBI RGD Ensembl Show fit
chr10_-_73865364 Show fit	0.03	ENSRNOT00000005226	Rps6kb1 Links NCBI RGD Ensembl Show fit	ribosomal protein S6 kinase B1
chr2_-_206274079 Show fit	0.03	ENSRNOT00000056079	Hipk1 Links NCBI RGD Ensembl Show fit	homeodomain interacting protein kinase 1
chr14_+_83510278 Show fit	0.03	ENSRNOT00000081161	Patz1 Links NCBI RGD Ensembl Show fit	POZ (BTB) and AT hook containing zinc finger 1
chr3_+_161413298 Show fit	0.03	ENSRNOT00000023965 ENSRNOT00000088776	Mmp9 Links NCBI RGD Ensembl Show fit	matrix metallopeptidase 9
chr10_+_35637133 Show fit	0.03	ENSRNOT00000043085	Tbc1d9b Links NCBI RGD Ensembl Show fit	TBC1 domain family member 9B
chr10_+_61772449 Show fit	0.03	ENSRNOT00000004058	Smg6 Links NCBI RGD Ensembl Show fit	SMG6 nonsense mediated mRNA decay factor
chr6_+_72092194 Show fit	0.03	ENSRNOT00000005670	G2e3 Links NCBI RGD Ensembl Show fit	G2/M-phase specific E3 ubiquitin protein ligase
chr4_+_145282797 Show fit	0.03	ENSRNOT00000085766	Ogg1 Links NCBI RGD Ensembl Show fit	8-oxoguanine DNA glycosylase
chr14_-_87701884 Show fit	0.03	ENSRNOT00000079338	Mospd1 Links NCBI RGD Ensembl Show fit	motile sperm domain containing 1
chr5_+_117586103 Show fit	0.03	ENSRNOT00000084640	Usp1 Links NCBI RGD Ensembl Show fit	ubiquitin specific peptidase 1
chr11_+_73198522 Show fit	0.03	ENSRNOT00000002356	Xxylt1 Links NCBI RGD Ensembl Show fit	xyloside xylosyltransferase 1
chr13_+_56513286 Show fit	0.03	ENSRNOT00000015596	Zbtb41 Links NCBI RGD Ensembl Show fit	zinc finger and BTB domain containing 41
chrX_+_33599671 Show fit	0.03	ENSRNOT00000006843	Txlng Links NCBI RGD Ensembl Show fit	taxilin gamma
chr6_-_127508452 Show fit	0.03	ENSRNOT00000073709	LOC100909524 Links NCBI RGD Ensembl Show fit	protein Z-dependent protease inhibitor-like
chr2_-_188596222 Show fit	0.03	ENSRNOT00000027920	Efna1 Links NCBI RGD Ensembl Show fit	ephrin A1
chrX_-_75566481 Show fit	0.03	ENSRNOT00000003714	Zdhhc15 Links NCBI RGD Ensembl Show fit	zinc finger, DHHC-type containing 15
chr12_+_17253791 Show fit	0.03	ENSRNOT00000083814	Zfand2a Links NCBI RGD Ensembl Show fit	zinc finger AN1-type containing 2A
chr3_-_164728338 Show fit	0.03	ENSRNOT00000035463	Fam65c Links NCBI RGD Ensembl Show fit	family with sequence similarity 65, member C
chr10_+_15183803 Show fit	0.03	ENSRNOT00000039777	Fbxl16 Links NCBI RGD Ensembl Show fit	F-box and leucine-rich repeat protein 16
chr1_+_116604550 Show fit	0.03	ENSRNOT00000083587	Ube3a Links NCBI RGD Ensembl Show fit	ubiquitin protein ligase E3A
chr1_-_89559960 Show fit	0.02	ENSRNOT00000092133	Scn1b Links NCBI RGD Ensembl Show fit	sodium voltage-gated channel beta subunit 1
chrX_-_105793306 Show fit	0.02	ENSRNOT00000015806	Nxf2 Links NCBI RGD Ensembl Show fit	nuclear RNA export factor 2
chr18_+_28361283 Show fit	0.02	ENSRNOT00000026949	Matr3 Links NCBI RGD Ensembl Show fit	matrin 3
chr9_-_19372673 Show fit	0.02	ENSRNOT00000073667 ENSRNOT00000079517	Clic5 Links NCBI RGD Ensembl Show fit	chloride intracellular channel 5
chr1_+_238222521 Show fit	0.02	ENSRNOT00000024000	Aldh1a1 Links NCBI RGD Ensembl Show fit	aldehyde dehydrogenase 1 family, member A1
chr10_+_38788992 Show fit	0.02	ENSRNOT00000009727	Gdf9 Links NCBI RGD Ensembl Show fit	growth differentiation factor 9
chr2_+_68821004 Show fit	0.02	ENSRNOT00000083713	Egf Links NCBI RGD Ensembl Show fit	epidermal growth factor
chr6_+_129835919 Show fit	0.02	ENSRNOT00000036035	Vrk1 Links NCBI RGD Ensembl Show fit	vaccinia related kinase 1
chr5_+_148320438 Show fit	0.02	ENSRNOT00000018742	Pef1 Links NCBI RGD Ensembl Show fit	penta-EF hand domain containing 1
chr20_-_8574082 Show fit	0.02	ENSRNOT00000048845	Mdga1 Links NCBI RGD Ensembl Show fit	MAM domain containing glycosylphosphatidylinositol anchor 1
chr10_+_93811505 Show fit	0.02	ENSRNOT00000081937	Tanc2 Links NCBI RGD Ensembl Show fit	tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2
chr11_+_88699222 Show fit	0.02	ENSRNOT00000084177	Fgd4 Links NCBI RGD Ensembl Show fit	FYVE, RhoGEF and PH domain containing 4
chr3_-_133894569 Show fit	0.02	ENSRNOT00000084221	AABR07053968.1 Links NCBI RGD Ensembl Show fit
chr1_+_128199322 Show fit	0.02	ENSRNOT00000075131	Lysmd4 Links NCBI RGD Ensembl Show fit	LysM domain containing 4
chr10_-_56289882 Show fit	0.02	ENSRNOT00000090762 ENSRNOT00000056903	Tnfsf13 Links NCBI RGD Ensembl Show fit	tumor necrosis factor superfamily member 13
chr1_+_197839430 Show fit	0.02	ENSRNOT00000025043	Rabep2 Links NCBI RGD Ensembl Show fit	rabaptin, RAB GTPase binding effector protein 2
chr11_-_55240241 Show fit	0.02	ENSRNOT00000064614	Dppa4 Links NCBI RGD Ensembl Show fit	developmental pluripotency associated 4
chr1_-_141533908 Show fit	0.02	ENSRNOT00000020117	Mesp1 Links NCBI RGD Ensembl Show fit	mesoderm posterior bHLH transcription factor 1
chr4_+_122365093 Show fit	0.02	ENSRNOT00000024011	Klf15 Links NCBI RGD Ensembl Show fit	Kruppel-like factor 15
chr4_-_170195107 Show fit	0.02	ENSRNOT00000073808	LOC100912450 Links NCBI RGD Ensembl Show fit	uncharacterized LOC100912450
chr4_-_170813012 Show fit	0.02	ENSRNOT00000073975	LOC108348150 Links NCBI RGD Ensembl Show fit	single-pass membrane and coiled-coil domain-containing protein 3
chrX_-_111179152 Show fit	0.02	ENSRNOT00000089115	Morc4 Links NCBI RGD Ensembl Show fit	MORC family CW-type zinc finger 4
chr1_-_213635546 Show fit	0.02	ENSRNOT00000018861	Sirt3 Links NCBI RGD Ensembl Show fit	sirtuin 3
chr2_-_1511591 Show fit	0.02	ENSRNOT00000087906 ENSRNOT00000014709	Cast Links NCBI RGD Ensembl Show fit	calpastatin
chr10_+_63778755 Show fit	0.01	ENSRNOT00000090481	Inpp5k Links NCBI RGD Ensembl Show fit	inositol polyphosphate-5-phosphatase K
chr20_+_47494270 Show fit	0.01	ENSRNOT00000036365	Sec63 Links NCBI RGD Ensembl Show fit	SEC63 homolog, protein translocation regulator
chr20_+_6356423 Show fit	0.01	ENSRNOT00000000628	Cdkn1a Links NCBI RGD Ensembl Show fit	cyclin-dependent kinase inhibitor 1A
chr19_-_37907714 Show fit	0.01	ENSRNOT00000026361	Ctrl Links NCBI RGD Ensembl Show fit	chymotrypsin-like
chr18_-_69723869 Show fit	0.01	ENSRNOT00000000125	Elac1 Links NCBI RGD Ensembl Show fit	elaC ribonuclease Z 1
chr13_+_49092306 Show fit	0.01	ENSRNOT00000000039	Nuak2 Links NCBI RGD Ensembl Show fit	NUAK family kinase 2
chr1_+_213451721 Show fit	0.01	ENSRNOT00000045652	Olr315 Links NCBI RGD Ensembl Show fit	olfactory receptor 315
chr10_-_51778939 Show fit	0.01	ENSRNOT00000078675 ENSRNOT00000057562	Myocd Links NCBI RGD Ensembl Show fit	myocardin
chr3_+_149493655 Show fit	0.01	ENSRNOT00000018226	Bpifa2 Links NCBI RGD Ensembl Show fit	BPI fold containing family A, member 2
chr10_+_11206226 Show fit	0.01	ENSRNOT00000006979	Tfap4 Links NCBI RGD Ensembl Show fit	transcription factor AP-4
chr10_-_47630799 Show fit	0.01	ENSRNOT00000057907	Slc47a2 Links NCBI RGD Ensembl Show fit	solute carrier family 47 member 2
chr3_+_175493698 Show fit	0.01	ENSRNOT00000087356	Osbpl2 Links NCBI RGD Ensembl Show fit	oxysterol binding protein-like 2
chr15_+_107486555 Show fit	0.01	ENSRNOT00000074277	AABR07019512.1 Links NCBI RGD Ensembl Show fit
chr1_-_167698263 Show fit	0.01	ENSRNOT00000093046	Trim21 Links NCBI RGD Ensembl Show fit	tripartite motif-containing 21
chr13_+_89774764 Show fit	0.01	ENSRNOT00000005619	Arhgap30 Links NCBI RGD Ensembl Show fit	Rho GTPase activating protein 30
chr17_+_10066187 Show fit	0.01	ENSRNOT00000091200	Uimc1 Links NCBI RGD Ensembl Show fit	ubiquitin interaction motif containing 1
chr6_-_103605256 Show fit	0.01	ENSRNOT00000006005	Dcaf5 Links NCBI RGD Ensembl Show fit	DDB1 and CUL4 associated factor 5
chr19_+_39126589 Show fit	0.01	ENSRNOT00000027561	Sntb2 Links NCBI RGD Ensembl Show fit	syntrophin, beta 2
chr1_-_215858034 Show fit	0.01	ENSRNOT00000027656	Ins2 Links NCBI RGD Ensembl Show fit	insulin 2
chr4_-_78074906 Show fit	0.01	ENSRNOT00000080654	Zfp467 Links NCBI RGD Ensembl Show fit	zinc finger protein 467
chr4_+_142780987 Show fit	0.01	ENSRNOT00000056570	Grm7 Links NCBI RGD Ensembl Show fit	glutamate metabotropic receptor 7
chr5_-_62001196 Show fit	0.01	ENSRNOT00000012602	Trmo Links NCBI RGD Ensembl Show fit	tRNA methyltransferase O
chr12_+_46869836 Show fit	0.01	ENSRNOT00000084421	Sirt4 Links NCBI RGD Ensembl Show fit	sirtuin 4
chr1_+_213636093 Show fit	0.01	ENSRNOT00000019642	Psmd13 Links NCBI RGD Ensembl Show fit	proteasome 26S subunit, non-ATPase 13
chr8_-_124399494 Show fit	0.01	ENSRNOT00000037883	Tgfbr2 Links NCBI RGD Ensembl Show fit	transforming growth factor, beta receptor 2
chr16_-_18645941 Show fit	0.01	ENSRNOT00000079241	Dydc2 Links NCBI RGD Ensembl Show fit	DPY30 domain containing 2
chr4_+_89079014 Show fit	0.01	ENSRNOT00000087451	Herc3 Links NCBI RGD Ensembl Show fit	HECT and RLD domain containing E3 ubiquitin protein ligase 3
chr14_-_14390699 Show fit	0.01	ENSRNOT00000046639	Anxa3 Links NCBI RGD Ensembl Show fit	annexin A3
chr4_-_32087600 Show fit	0.01	ENSRNOT00000013841	Sem1 Links NCBI RGD Ensembl Show fit	SEM1, 26S proteasome complex subunit
chr4_-_78075398 Show fit	0.01	ENSRNOT00000010377	Zfp467 Links NCBI RGD Ensembl Show fit	zinc finger protein 467
chr10_-_109966782 Show fit	0.01	ENSRNOT00000078052 ENSRNOT00000075041	Rfng Links NCBI RGD Ensembl Show fit	RFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase
chr1_+_189870622 Show fit	0.01	ENSRNOT00000075003	Tmem159 Links NCBI RGD Ensembl Show fit	transmembrane protein 159
chr11_+_74057361 Show fit	0.01	ENSRNOT00000048746	Cpn2 Links NCBI RGD Ensembl Show fit	carboxypeptidase N subunit 2
chrX_+_54266687 Show fit	0.01	ENSRNOT00000058309	LOC100363193 Links NCBI RGD Ensembl Show fit	LRRGT00076-like
chr1_+_220243473 Show fit	0.01	ENSRNOT00000084650 ENSRNOT00000027091	mrpl11 Links NCBI RGD Ensembl Show fit	mitochondrial ribosomal protein L11
chr7_-_99677268 Show fit	0.01	ENSRNOT00000013315	RGD1564420 Links NCBI RGD Ensembl Show fit	similar to Hypothetical protein MGC31278
chr16_+_20962227 Show fit	0.01	ENSRNOT00000027615	Slc25a42 Links NCBI RGD Ensembl Show fit	solute carrier family 25, member 42
chr16_+_46731403 Show fit	0.01	ENSRNOT00000017624	Tenm3 Links NCBI RGD Ensembl Show fit	teneurin transmembrane protein 3
chr1_-_73121085 Show fit	0.01	ENSRNOT00000073464	LOC684545 Links NCBI RGD Ensembl Show fit	similar to NACHT, leucine rich repeat and PYD containing 2
chr9_-_81565416 Show fit	0.00	ENSRNOT00000083582	Aamp Links NCBI RGD Ensembl Show fit	angio-associated, migratory cell protein
chr10_+_32824 Show fit	0.00	ENSRNOT00000077828	LOC103689943 Links NCBI RGD Ensembl Show fit	meiosis arrest female protein 1-like
chr1_+_193335645 Show fit	0.00	ENSRNOT00000019640	Lcmt1 Links NCBI RGD Ensembl Show fit	leucine carboxyl methyltransferase 1
chr12_+_40466495 Show fit	0.00	ENSRNOT00000001816	Aldh2 Links NCBI RGD Ensembl Show fit	aldehyde dehydrogenase 2 family (mitochondrial)
chr16_-_81834945 Show fit	0.00	ENSRNOT00000037806	F7 Links NCBI RGD Ensembl Show fit	coagulation factor VII
chr3_+_151126591 Show fit	0.00	ENSRNOT00000025859	Myh7b Links NCBI RGD Ensembl Show fit	myosin heavy chain 7B
chr3_-_176706896 Show fit	0.00	ENSRNOT00000017337	Ptk6 Links NCBI RGD Ensembl Show fit	protein tyrosine kinase 6
chr1_-_133559975 Show fit	0.00	ENSRNOT00000046645	Mctp2 Links NCBI RGD Ensembl Show fit	multiple C2 and transmembrane domain containing 2
chr4_+_118243132 Show fit	0.00	ENSRNOT00000023654	RGD1306746 Links NCBI RGD Ensembl Show fit	similar to Hypothetical protein MGC25529
chr7_+_78732904 Show fit	0.00	ENSRNOT00000088433	LOC103690326 Links NCBI RGD Ensembl Show fit	dendritic cell-specific transmembrane protein
chr4_-_9060554 Show fit	0.00	ENSRNOT00000046248	AABR07059215.1 Links NCBI RGD Ensembl Show fit
chr9_-_63637677 Show fit	0.00	ENSRNOT00000049259	Satb2 Links NCBI RGD Ensembl Show fit	SATB homeobox 2
chrX_+_159703578 Show fit	0.00	ENSRNOT00000001162	Cd40lg Links NCBI RGD Ensembl Show fit	CD40 ligand
chr6_-_21112734 Show fit	0.00	ENSRNOT00000079819	Rasgrp3 Links NCBI RGD Ensembl Show fit	RAS guanyl releasing protein 3
chr2_+_43271092 Show fit	0.00	ENSRNOT00000017571	Mier3 Links NCBI RGD Ensembl Show fit	mesoderm induction early response 1, family member 3
chr1_-_22404002 Show fit	0.00	ENSRNOT00000044098	Taar8a Links NCBI RGD Ensembl Show fit	trace amine-associated receptor 8a
chr5_-_171415354 Show fit	0.00	ENSRNOT00000055398	Tp73 Links NCBI RGD Ensembl Show fit	tumor protein p73
chr1_-_240601744 Show fit	0.00	ENSRNOT00000024093	Aldh1a7 Links NCBI RGD Ensembl Show fit	aldehyde dehydrogenase family 1, subfamily A7
chr8_-_75995371 Show fit	0.00	ENSRNOT00000014014	Foxb1 Links NCBI RGD Ensembl Show fit	forkhead box B1
chr19_+_37600148 Show fit	0.00	ENSRNOT00000023853	Ctcf Links NCBI RGD Ensembl Show fit	CCCTC-binding factor
chr3_+_122928964 Show fit	0.00	ENSRNOT00000074724	LOC100365450 Links NCBI RGD Ensembl Show fit	rCG26795-like
chr16_-_82999827 Show fit	0.00	ENSRNOT00000041223	Tex29 Links NCBI RGD Ensembl Show fit	testis expressed 29

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Gene overrepresentation in biological process category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.0	GO:0046952	acetyl-CoA catabolic process(GO:0046356) ketone body catabolic process(GO:0046952) metanephric proximal tubule development(GO:0072237)
0.0	0.0	GO:0046416	D-amino acid metabolic process(GO:0046416)
0.0	0.1	GO:0051122	hepoxilin metabolic process(GO:0051121) hepoxilin biosynthetic process(GO:0051122)
0.0	0.1	GO:0071267	amino acid salvage(GO:0043102) L-methionine salvage(GO:0071267)
0.0	0.0	GO:0071283	response to high light intensity(GO:0009644) cellular response to iron(III) ion(GO:0071283)

Gene overrepresentation in molecular function category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.0	GO:0016453	C-acetyltransferase activity(GO:0016453)
0.0	0.0	GO:0003941	L-serine ammonia-lyase activity(GO:0003941)
0.0	0.1	GO:0008172	S-methyltransferase activity(GO:0008172)