GSE49485: Hypoxia transcriptome sequencing of rat brain.

• Motif significance table
• Sample table
• Mean activities
• All promoters sorted by FOV

• Activity table
• Activity delta table
• Regulatory interactions
• Motifs sorted by significance
• Expression table
• Download the whole report

Gene Symbol	Gene ID	Gene Info
Bsx Links NCBI RGD Ensembl	ENSRNOG00000024438	brain specific homeobox

Gene	Promoter	Pearson corr. coef.	P-value	Plot
Bsx	rn6_v1_chr8_+_45061670_45061670	-0.03	9.6e-01	Click!

Promoter	Log-likelihood	Transcript	Gene	Gene Info
chr10_+_109278712 Show fit	0.15	ENSRNOT00000065565	LOC690871 Links NCBI RGD Ensembl Show fit	hypothetical protein LOC690871
chr18_-_24735349 Show fit	0.13	ENSRNOT00000036537	Gpr17 Links NCBI RGD Ensembl Show fit	G protein-coupled receptor 17
chr10_+_61685645 Show fit	0.11	ENSRNOT00000003933	Mnt Links NCBI RGD Ensembl Show fit	MAX network transcriptional repressor
chr12_+_47179664 Show fit	0.11	ENSRNOT00000001551	Cabp1 Links NCBI RGD Ensembl Show fit	calcium binding protein 1
chr1_-_277902279 Show fit	0.10	ENSRNOT00000078416	Ablim1 Links NCBI RGD Ensembl Show fit	actin-binding LIM protein 1
chr1_+_217345545 Show fit	0.08	ENSRNOT00000071741	Shank2 Links NCBI RGD Ensembl Show fit	SH3 and multiple ankyrin repeat domains 2
chr1_+_80279706 Show fit	0.08	ENSRNOT00000047105	Ppp1r13l Links NCBI RGD Ensembl Show fit	protein phosphatase 1, regulatory subunit 13 like
chr14_-_84751886 Show fit	0.07	ENSRNOT00000078838	Mtmr3 Links NCBI RGD Ensembl Show fit	myotubularin related protein 3
chr1_+_201913148 Show fit	0.07	ENSRNOT00000036128	Fam24a Links NCBI RGD Ensembl Show fit	family with sequence similarity 24, member A
chr20_+_6211420 Show fit	0.07	ENSRNOT00000000624	Kctd20 Links NCBI RGD Ensembl Show fit	potassium channel tetramerization domain containing 20
chr1_+_141767940 Show fit	0.07	ENSRNOT00000064034	Zfp710 Links NCBI RGD Ensembl Show fit	zinc finger protein 710
chr8_-_82533689 Show fit	0.06	ENSRNOT00000014124	Tmod2 Links NCBI RGD Ensembl Show fit	tropomodulin 2
chrX_+_6273733 Show fit	0.05	ENSRNOT00000074275	Ndp Links NCBI RGD Ensembl Show fit	NDP, norrin cystine knot growth factor
chr15_-_30147793 Show fit	0.05	ENSRNOT00000060399	AABR07017693.1 Links NCBI RGD Ensembl Show fit
chr10_-_46172166 Show fit	0.05	ENSRNOT00000091052 ENSRNOT00000004412	Flcn Links NCBI RGD Ensembl Show fit	folliculin
chr2_+_185846232 Show fit	0.05	ENSRNOT00000023418	Lrba Links NCBI RGD Ensembl Show fit	LPS responsive beige-like anchor protein
chr1_+_140998240 Show fit	0.05	ENSRNOT00000023506 ENSRNOT00000090897	Abhd2 Links NCBI RGD Ensembl Show fit	abhydrolase domain containing 2
chr1_-_275906686 Show fit	0.04	ENSRNOT00000092170	Gpam Links NCBI RGD Ensembl Show fit	glycerol-3-phosphate acyltransferase, mitochondrial
chrX_-_84768463 Show fit	0.04	ENSRNOT00000088570	Chm Links NCBI RGD Ensembl Show fit	CHM, Rab escort protein 1
chr1_-_64147251 Show fit	0.04	ENSRNOT00000088502	Cnot3 Links NCBI RGD Ensembl Show fit	CCR4-NOT transcription complex, subunit 3
chr12_-_19167015 Show fit	0.04	ENSRNOT00000001797	Gjc3 Links NCBI RGD Ensembl Show fit	gap junction protein, gamma 3
chr3_+_148654668 Show fit	0.04	ENSRNOT00000081370	Tm9sf4 Links NCBI RGD Ensembl Show fit	transmembrane 9 superfamily member 4
chr5_+_50381244 Show fit	0.04	ENSRNOT00000012385	Cga Links NCBI RGD Ensembl Show fit	glycoprotein hormones, alpha polypeptide
chr12_+_22641104 Show fit	0.03	ENSRNOT00000001916	Serpine1 Links NCBI RGD Ensembl Show fit	serpin family E member 1
chr13_-_89545182 Show fit	0.03	ENSRNOT00000078402	Pcp4l1 Links NCBI RGD Ensembl Show fit	Purkinje cell protein 4-like 1
chr10_-_110274768 Show fit	0.03	ENSRNOT00000054931	Sectm1a Links NCBI RGD Ensembl Show fit	secreted and transmembrane 1A
chr17_-_87826421 Show fit	0.03	ENSRNOT00000068156	Arhgap21 Links NCBI RGD Ensembl Show fit	Rho GTPase activating protein 21
chr8_+_33239139 Show fit	0.03	ENSRNOT00000011589	Arhgap32 Links NCBI RGD Ensembl Show fit	Rho GTPase activating protein 32
chr1_-_67065797 Show fit	0.03	ENSRNOT00000048152	Vom1r46 Links NCBI RGD Ensembl Show fit	vomeronasal 1 receptor 46
chr3_-_101547478 Show fit	0.03	ENSRNOT00000006203	Fibin Links NCBI RGD Ensembl Show fit	fin bud initiation factor homolog (zebrafish)
chr7_+_73273985 Show fit	0.03	ENSRNOT00000077730	Pop1 Links NCBI RGD Ensembl Show fit	POP1 homolog, ribonuclease P/MRP subunit
chr9_-_44419998 Show fit	0.03	ENSRNOT00000091397 ENSRNOT00000083747	Tsga10 Links NCBI RGD Ensembl Show fit	testis specific 10
chr1_+_166141954 Show fit	0.02	ENSRNOT00000042524	Fchsd2 Links NCBI RGD Ensembl Show fit	FCH and double SH3 domains 2
chr6_+_58468155 Show fit	0.02	ENSRNOT00000091263	Etv1 Links NCBI RGD Ensembl Show fit	ets variant 1
chr8_+_82038967 Show fit	0.02	ENSRNOT00000079535	Myo5a Links NCBI RGD Ensembl Show fit	myosin VA
chr1_+_255579474 Show fit	0.02	ENSRNOT00000024465	Btaf1 Links NCBI RGD Ensembl Show fit	B-TFIID TATA-box binding protein associated factor 1
chr11_-_90234286 Show fit	0.02	ENSRNOT00000071986	Efcab1 Links NCBI RGD Ensembl Show fit	EF hand calcium binding domain 1
chr1_+_265157379 Show fit	0.02	ENSRNOT00000022426	Btrc Links NCBI RGD Ensembl Show fit	beta-transducin repeat containing E3 ubiquitin protein ligase
chr1_+_273854248 Show fit	0.02	ENSRNOT00000044827 ENSRNOT00000017600 ENSRNOT00000086496	Add3 Links NCBI RGD Ensembl Show fit	adducin 3
chr10_-_93675991 Show fit	0.02	ENSRNOT00000090662	March10 Links NCBI RGD Ensembl Show fit	membrane associated ring-CH-type finger 10
chr11_-_51202703 Show fit	0.02	ENSRNOT00000002719 ENSRNOT00000077220	Cblb Links NCBI RGD Ensembl Show fit	Cbl proto-oncogene B
chr4_+_32541706 Show fit	0.02	ENSRNOT00000050827	Sdhaf3 Links NCBI RGD Ensembl Show fit	succinate dehydrogenase complex assembly factor 3
chr9_-_98551410 Show fit	0.02	ENSRNOT00000066346 ENSRNOT00000086678	Hes6 Links NCBI RGD Ensembl Show fit	hes family bHLH transcription factor 6
chr1_-_154170409 Show fit	0.02	ENSRNOT00000089014	Hikeshi Links NCBI RGD Ensembl Show fit	Hikeshi, heat shock protein nuclear import factor
chr9_-_85243001 Show fit	0.02	ENSRNOT00000020219	Scg2 Links NCBI RGD Ensembl Show fit	secretogranin II
chr11_+_81757983 Show fit	0.02	ENSRNOT00000088503	Tbccd1 Links NCBI RGD Ensembl Show fit	TBCC domain containing 1
chr11_-_81757813 Show fit	0.02	ENSRNOT00000002462	Dnajb11 Links NCBI RGD Ensembl Show fit	DnaJ heat shock protein family (Hsp40) member B11
chr4_-_67301102 Show fit	0.02	ENSRNOT00000034549	Dennd2a Links NCBI RGD Ensembl Show fit	DENN domain containing 2A
chr7_-_70577147 Show fit	0.02	ENSRNOT00000008854	Mbd6 Links NCBI RGD Ensembl Show fit	methyl-CpG binding domain protein 6
chr2_-_227582895 Show fit	0.02	ENSRNOT00000020574	Mettl14 Links NCBI RGD Ensembl Show fit	methyltransferase like 14
chr10_+_19366793 Show fit	0.01	ENSRNOT00000050610	Fam196b Links NCBI RGD Ensembl Show fit	family with sequence similarity 196, member B
chr2_-_60657712 Show fit	0.01	ENSRNOT00000040348	Rai14 Links NCBI RGD Ensembl Show fit	retinoic acid induced 14
chr9_+_73418607 Show fit	0.01	ENSRNOT00000092547	Map2 Links NCBI RGD Ensembl Show fit	microtubule-associated protein 2
chr5_-_133959447 Show fit	0.01	ENSRNOT00000011985	Cyp4x1 Links NCBI RGD Ensembl Show fit	cytochrome P450, family 4, subfamily x, polypeptide 1
chr4_-_168656673 Show fit	0.01	ENSRNOT00000009341	Gpr19 Links NCBI RGD Ensembl Show fit	G protein-coupled receptor 19
chr2_-_149088787 Show fit	0.01	ENSRNOT00000064833	Clrn1 Links NCBI RGD Ensembl Show fit	clarin 1
chr10_+_43601689 Show fit	0.01	ENSRNOT00000029238	Mrpl22 Links NCBI RGD Ensembl Show fit	mitochondrial ribosomal protein L22
chr8_-_119523716 Show fit	0.01	ENSRNOT00000064581	Mlh1 Links NCBI RGD Ensembl Show fit	mutL homolog 1
chr9_-_43022998 Show fit	0.01	ENSRNOT00000063781 ENSRNOT00000089843	Lman2l Links NCBI RGD Ensembl Show fit	lectin, mannose-binding 2-like
chr15_+_56666012 Show fit	0.01	ENSRNOT00000013408	Htr2a Links NCBI RGD Ensembl Show fit	5-hydroxytryptamine receptor 2A
chr4_+_181874861 Show fit	0.01	ENSRNOT00000002527	Ccdc91 Links NCBI RGD Ensembl Show fit	coiled-coil domain containing 91
chr7_+_133856101 Show fit	0.01	ENSRNOT00000038686	Pdzrn4 Links NCBI RGD Ensembl Show fit	PDZ domain containing RING finger 4
chr10_-_87286387 Show fit	0.01	ENSRNOT00000044206	Krt28 Links NCBI RGD Ensembl Show fit	keratin 28
chr18_-_48720472 Show fit	0.01	ENSRNOT00000023236	Cep120 Links NCBI RGD Ensembl Show fit	centrosomal protein 120
chr15_-_19282873 Show fit	0.01	ENSRNOT00000075184	NEWGENE_1359268 Links NCBI RGD Ensembl Show fit	Smad nuclear interacting protein 1
chr14_+_3882398 Show fit	0.01	ENSRNOT00000033794	Hfm1 Links NCBI RGD Ensembl Show fit	HFM1, ATP-dependent DNA helicase homolog
chr19_+_6046665 Show fit	0.01	ENSRNOT00000084126	Cdh8 Links NCBI RGD Ensembl Show fit	cadherin 8
chrX_+_9956370 Show fit	0.01	ENSRNOT00000082316	LOC100910506 Links NCBI RGD Ensembl Show fit	peripheral plasma membrane protein CASK-like
chr7_-_140502441 Show fit	0.01	ENSRNOT00000089544	Kmt2d Links NCBI RGD Ensembl Show fit	lysine methyltransferase 2D
chr20_-_30947484 Show fit	0.01	ENSRNOT00000065614	Pald1 Links NCBI RGD Ensembl Show fit	phosphatase domain containing, paladin 1
chrX_-_70835089 Show fit	0.01	ENSRNOT00000076351	Tex11 Links NCBI RGD Ensembl Show fit	testis expressed 11
chr1_-_15374850 Show fit	0.01	ENSRNOT00000016728	Pex7 Links NCBI RGD Ensembl Show fit	peroxisomal biogenesis factor 7
chr5_+_64476317 Show fit	0.00	ENSRNOT00000017217	LOC108348074 Links NCBI RGD Ensembl Show fit	collagen alpha-1(XV) chain-like
chr4_+_68608137 Show fit	0.00	ENSRNOT00000036398	Wee2 Links NCBI RGD Ensembl Show fit	WEE1 homolog 2
chr18_-_69780922 Show fit	0.00	ENSRNOT00000079093	Me2 Links NCBI RGD Ensembl Show fit	malic enzyme 2
chr1_+_219833299 Show fit	0.00	ENSRNOT00000087432	Pc Links NCBI RGD Ensembl Show fit	pyruvate carboxylase
chr6_+_22167919 Show fit	0.00	ENSRNOT00000007655	Nlrc4 Links NCBI RGD Ensembl Show fit	NLR family, CARD domain containing 4
chr18_+_51523758 Show fit	0.00	ENSRNOT00000078518	Gramd3 Links NCBI RGD Ensembl Show fit	GRAM domain containing 3
chr3_+_81287242 Show fit	0.00	ENSRNOT00000086530	Pex16 Links NCBI RGD Ensembl Show fit	peroxisomal biogenesis factor 16
chr5_+_43603043 Show fit	0.00	ENSRNOT00000009899	Epha7 Links NCBI RGD Ensembl Show fit	Eph receptor A7
chr3_+_72395218 Show fit	0.00	ENSRNOT00000057616	Prg3 Links NCBI RGD Ensembl Show fit	proteoglycan 3, pro eosinophil major basic protein 2

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Gene overrepresentation in biological process category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.0	GO:1901856	negative regulation of cellular respiration(GO:1901856) regulation of post-translational protein modification(GO:1901873)
0.0	0.0	GO:0051684	maintenance of Golgi location(GO:0051684)
0.0	0.0	GO:1904638	response to resveratrol(GO:1904638) regulation of smooth muscle cell-matrix adhesion(GO:2000097)

Gene overrepresentation in cellular component category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.0	GO:0005968	Rab-protein geranylgeranyltransferase complex(GO:0005968)

Gene overrepresentation in molecular function category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.1	GO:0052629	phosphatidylinositol-3,5-bisphosphate 3-phosphatase activity(GO:0052629)