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GSE55662: Plasticity of transcriptional regulation under antibiotic stress

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ISMARA results GSE55662: Plasticity of transcriptional regulation under antibiotic stress

ISMARA - Integrated System for Motif Actitivity Response Analysis is a free online tool that recognizes most important transcription factors that are changing their activity in a set of samples.

All motifs sorted by activity significance

Motif name Z-value Associated genes Profile Logo
Fis 4.25 small profile
RcsB-BglJ 3.58 small profile
Sigma70 3.45
small profile
LexA 3.26 small profile
Fur 3.17 small profile
Sigma28 3.10
small profile
EvgA 2.82 small profile
FNR 2.69 small profile
Cra 2.67 small profile
Sigma32 2.67
small profile
ArgR 2.47 small profile
CysB 2.42 small profile
TyrR 2.25 small profile
PhoB 2.17 small profile
Nac 2.11 small profile
Lrp 2.06 small profile
CdaR 2.02 small profile
LeuO 2.02 small profile
PgrR 1.77 small profile
FlhDC 1.75
small profile
GlpR 1.71 small profile
H-NS 1.56
small profile
OmpR 1.53 small profile
RutR 1.49 small profile
NarP 1.46 small profile
HU 1.42
small profile
TrpR 1.38 small profile
GadE 1.38
small profile
NanR 1.34 small profile
RhaS 1.29 small profile
FadR 1.27 small profile
CaiF 1.25 small profile
MalT 1.24 small profile
GadX 1.22 small profile
EnvY 1.21 small profile
YdeO 1.21 small profile
IdnR 1.18 small profile
FliZ 1.16 small profile
CynR 1.15 small profile
ModE 1.14 small profile
RcsAB 1.14
small profile
DnaA 1.13 small profile
SoxS 1.13 small profile
GlcC 1.12 small profile
DicA 1.12 small profile
RcnR 1.04 small profile
RcdA 1.04 small profile
Sigma24 1.03
small profile
RcsB 1.03
small profile
FabR 1.02 small profile
PhoP 1.02 small profile
PuuR 0.99 small profile
GntR 0.99 small profile
OxyR 0.99 small profile
AdiY 0.99 small profile
CsgD 0.98 small profile
AllR 0.98 small profile
AgaR 0.97 small profile
DsdC 0.96 small profile
BasR 0.96 small profile
CreB 0.96 small profile
Zur 0.95 small profile
NtrC 0.95 small profile
FhlA 0.95 small profile
TreR 0.95 small profile
UhpA 0.94 small profile
GatR 0.94
small profile
BetI 0.92 small profile
CRP 0.92 small profile
HcaR 0.91 small profile
Sigma38 0.91
small profile
MngR 0.90 small profile
NagC 0.90 small profile
McbR 0.88 small profile
KdgR 0.87 small profile
MurR 0.86 small profile
GlrR 0.86 small profile
MetJ 0.86 small profile
XapR 0.85 small profile
AcrR 0.85 small profile
LsrR 0.85 small profile
UxuR 0.83 small profile
GadE-RcsB 0.81 small profile
Sigma54 0.81
small profile
MatA 0.81 small profile
PurR 0.81 small profile
PdhR 0.80 small profile
Dan 0.80 small profile
CytR 0.80 small profile
CspA 0.77 small profile
YeiL 0.77 small profile
SlyA 0.77 small profile
NrdR 0.77 small profile
TdcA 0.76 small profile
Mlc 0.75 small profile
BirA 0.75
small profile
Cbl 0.75 small profile
MntR 0.74 small profile
SgrR 0.73 small profile
MarA 0.73 small profile
LysR 0.73 small profile
AraC 0.72 small profile
NadR 0.72 small profile
HipB 0.71 small profile
PspF 0.71 small profile
YjjQ 0.70 small profile
ArgP 0.70 small profile
PaaX 0.69 small profile
AlsR 0.69 small profile
EbgR 0.69 small profile
AllS 0.68 small profile
MtlR 0.68 small profile
LrhA 0.67 small profile
DpiA 0.66 small profile
FeaR 0.65 small profile
DcuR 0.65 small profile
BaeR 0.64 small profile
IscR 0.64 small profile
YehT 0.63 small profile
Ada 0.63 small profile
ExuR 0.63 small profile
TorR 0.63 small profile
ArcA 0.63 small profile
UvrY 0.63 small profile
UlaR 0.62 small profile
YqhC 0.62 small profile
BolA 0.62 small profile
IlvY 0.62 small profile
YiaJ 0.61 small profile
Rob 0.60 small profile
BluR 0.60 small profile
MqsA 0.60 small profile
ZraR 0.59 small profile
HyfR 0.59 small profile
PrpR 0.57 small profile
YpdB 0.57 small profile
ArsR 0.57 small profile
YqjI 0.57 small profile
HdfR 0.57 small profile
MelR 0.56 small profile
NimR 0.55 small profile
NhaR 0.55 small profile
GadW 0.54 small profile
RstA 0.54 small profile
GcvA 0.53 small profile
AppY 0.52 small profile
DeoR 0.51 small profile
YedW 0.51 small profile
CusR 0.51 small profile
MprA 0.50 small profile
DinJ-YafQ 0.50 small profile
IHF 0.50
small profile
AidB 0.50
small profile
StpA 0.49
small profile
MarR 0.49 small profile
MalI 0.49 small profile
NsrR 0.49 small profile
GutM 0.48 small profile
CadC 0.47 small profile
LacI 0.47 small profile
MlrA 0.47 small profile
RclR 0.47 small profile
HypT 0.47 small profile
AlaS 0.46
small profile
CsiR 0.45 small profile
NikR 0.44 small profile
SoxR 0.43 small profile
Sigma19 0.43
small profile
NarL 0.43 small profile
RtcR 0.42 small profile
CpxR 0.41 small profile
MazE-MazF 0.41 small profile
MazE 0.41
small profile
NemR 0.40 small profile
SdiA 0.39 small profile
ComR 0.38 small profile
CueR 0.37 small profile
AscG 0.37 small profile
IclR 0.37 small profile
AsnC 0.37 small profile
AtoC 0.36 small profile
CecR 0.36 small profile
ChbR 0.36 small profile
MetR 0.35 small profile
HipAB 0.33
small profile
GalS 0.33 small profile
GalR 0.33 small profile
YefM 0.31 small profile
MhpR 0.31 small profile
NorR 0.30 small profile
XylR 0.29 small profile
QseB 0.28 small profile
RhaR 0.28 small profile
RbsR 0.27 small profile
FucR 0.26 small profile
AccB 0.26
small profile
PepA 0.25
small profile
KdpE 0.24 small profile
ZntR 0.21 small profile
SutR 0.21 small profile
PutA 0.21
small profile
UidR 0.21 small profile
LldR 0.20 small profile
EnvR 0.16 small profile
MraZ 0.15 small profile
DhaR 0.13 small profile
RelB 0.07 small profile

All samples sorted alphabetically

Sample name Condition Replicate/Batch
01_WT_noCPR_1
02_WT_noCPR_2
03_WT_CPR_1
04_WT_CPR_2
05_FUR_noCPR_1
06_FUR_noCPR_2
07_FUR_CPR_1
08_FUR_CPR_2