ISMARA results: RbsR

Project

GSE55662: Plasticity of transcriptional regulation under antibiotic stress

Navigation

Downloads

Results for RbsR

Z-value: 0.27

Transcription factors associated with RbsR

Gene Symbol	Gene ID	Gene Info
rbsR RegulonDB EcoCyc	rbsR	RbsR DNA-binding transcriptional dual regulator

Activity-expression correlation:

Gene	Promoter	Pearson corr. coef.	P-value	Plot
rbsR		0.75	3.1e-02	Click!

Activity profile of RbsR motif

Sorted Z-values of RbsR motif

Top targets:

Search:

Show entries

Promoter	Log-likelihood	Transcript	Gene	Gene Info
add Show fit	1.00		add RegulonDB EcoCyc Show fit	adenosine deaminase
rbsDACBKR Show fit	0.80		rbsK RegulonDB EcoCyc Show fit rbsA RegulonDB EcoCyc Show fit rbsC RegulonDB EcoCyc Show fit rbsB RegulonDB EcoCyc Show fit rbsD RegulonDB EcoCyc Show fit rbsR RegulonDB EcoCyc Show fit	ribokinase ribose ABC transporter - putative ATP binding subunit ribose ABC transporter - membrane subunit ribose ABC transporter - putative periplasmic binding protein ribose pyranase RbsR DNA-binding transcriptional dual regulator

Showing 1 to 2 of 2 entries

Network of associatons between targets according to the STRING database.

First level regulatory network of RbsR

View svg image
View png image

Gene Ontology Analysis

Gene overrepresentation in biological process category:

Search:

Show entries

Log-likelihood per target	Total log-likelihood	Term	Description
0.3	1.0	GO:0032261	purine nucleobase biosynthetic process(GO:0009113) purine nucleotide salvage(GO:0032261) hypoxanthine metabolic process(GO:0046100)
0.2	0.8	GO:0050918	positive chemotaxis(GO:0050918)

Showing 1 to 2 of 2 entries

Gene overrepresentation in cellular component category:

Search:

Show entries

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.8	GO:0098533	ATP-binding cassette (ABC) transporter complex(GO:0043190) ATPase dependent transmembrane transport complex(GO:0098533) ATPase complex(GO:1904949)

Showing 1 to 1 of 1 entries

Gene overrepresentation in molecular function category:

Search:

Show entries

Log-likelihood per target	Total log-likelihood	Term	Description
0.1	1.0	GO:0019239	deaminase activity(GO:0019239)
0.2	0.8	GO:0043211	carbohydrate-transporting ATPase activity(GO:0043211)

Showing 1 to 2 of 2 entries

Results for RbsR

Z-value: 0.27

Transcription factors associated with RbsR

Activity-expression correlation:

Activity profile of RbsR motif

Sorted Z-values of RbsR motif

Top targets:

Network of associatons between targets according to the STRING database.

First level regulatory network of RbsR

In order to view interactive SVG image please either update your browser to latest version or install SVG plugin.

Gene Ontology Analysis

Gene overrepresentation in biological process category:

Gene overrepresentation in cellular component category:

Gene overrepresentation in molecular function category: