GSE55662: Plasticity of transcriptional regulation under antibiotic stress
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
evgA
|
evgA | EvgA transcriptional activator |
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| evgA | 0.81 | 1.4e-02 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| safA-ydeO | 18.49 |
ydeO
safA
|
YdeO DNA-binding transcriptional dual regulator two-component system connector protein |
|
| yegRZ | 18.31 |
yegR
yegZ
|
predicted protein predicted protein fragment |
|
| emrKY | 16.42 |
emrY
emrK
|
EmrKY multidrug efflux pump - membrane subunit EmrKY-TolC multidrug efflux pump - membrane fusion protein |
|
| yfdX-frc-oxc-yfdVE | 12.31 |
frc
yfdE
yfdV
yfdX
oxc
|
formyl-CoA transferase acetyl-CoA:oxalate CoA-transferase putative transport protein, auxin efflux carrier family predicted protein oxalyl-CoA decarboxylase |
|
| frc | 11.67 |
frc
|
formyl-CoA transferase |
|
| acrD | 8.99 |
acrD
|
AcrAD-TolC multidrug efflux pump - permease subunit |
|
| ydeP | 8.90 |
ydeP
|
acid resistance protein |
|
| evgAS | 1.35 |
evgA
evgS
|
EvgA transcriptional activator EvgS sensory histidine kinase |
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 4.8 | 24.0 | GO:0071468 | cellular response to acidic pH(GO:0071468) |
| 2.2 | 9.0 | GO:0006855 | drug transmembrane transport(GO:0006855) |
| 2.0 | 10.2 | GO:0010447 | response to acidic pH(GO:0010447) |
| 0.3 | 8.8 | GO:0046677 | response to antibiotic(GO:0046677) |
| 0.3 | 18.5 | GO:1902680 | positive regulation of transcription, DNA-templated(GO:0045893) positive regulation of RNA metabolic process(GO:0051254) positive regulation of RNA biosynthetic process(GO:1902680) positive regulation of nucleic acid-templated transcription(GO:1903508) |
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 48.6 | GO:0005886 | plasma membrane(GO:0005886) |
| 0.1 | 1.3 | GO:0016021 | integral component of membrane(GO:0016021) |
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 8.0 | 24.0 | GO:0008410 | CoA-transferase activity(GO:0008410) |
| 3.0 | 9.0 | GO:0015307 | drug:proton antiporter activity(GO:0015307) |
| 0.4 | 1.3 | GO:0009927 | histidine phosphotransfer kinase activity(GO:0009927) |
| 0.2 | 18.5 | GO:0003700 | transcription factor activity, sequence-specific DNA binding(GO:0003700) |
| 0.0 | 8.8 | GO:0005215 | transporter activity(GO:0005215) |