ISMARA results: HyfR

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GSE55662: Plasticity of transcriptional regulation under antibiotic stress

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Results for HyfR

Z-value: 0.59

Transcription factors associated with HyfR

Gene Symbol	Gene ID	Gene Info
hyfR RegulonDB EcoCyc	hyfR	HyfR DNA-binding transcriptional activator

Activity-expression correlation:

Gene	Promoter	Pearson corr. coef.	P-value	Plot
hyfR		0.99	5.8e-07	Click!

Activity profile of HyfR motif

Sorted Z-values of HyfR motif

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Promoter	Log-likelihood	Transcript	Gene	Gene Info
hyfABCDEFGHIJR-focB Show fit	5.41		hyfJ RegulonDB EcoCyc Show fit hyfI RegulonDB EcoCyc Show fit hyfH RegulonDB EcoCyc Show fit hyfC RegulonDB EcoCyc Show fit hyfB RegulonDB EcoCyc Show fit hyfA RegulonDB EcoCyc Show fit hyfG RegulonDB EcoCyc Show fit hyfF RegulonDB EcoCyc Show fit hyfE RegulonDB EcoCyc Show fit hyfD RegulonDB EcoCyc Show fit hyfR RegulonDB EcoCyc Show fit focB RegulonDB EcoCyc Show fit	hydrogenase 4 component J, putative protein processing element hydrogenase 4, small subunit hydrogenase 4, component H hydrogenase 4, component C hydrogenase 4, component B hydrogenase 4, component A hydrogenase 4, large subunit hydrogenase 4, component F hydrogenase 4, component E hydrogenase 4, component D HyfR DNA-binding transcriptional activator FocB formate FNT transporter

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Network of associatons between targets according to the STRING database.

First level regulatory network of HyfR

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

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Log-likelihood per target	Total log-likelihood	Term	Description
0.3	5.4	GO:2000142	regulation of DNA-templated transcription, initiation(GO:2000142)

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Gene overrepresentation in cellular component category:

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Log-likelihood per target	Total log-likelihood	Term	Description
0.0	5.4	GO:0005887	integral component of plasma membrane(GO:0005887)

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Gene overrepresentation in molecular function category:

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Log-likelihood per target	Total log-likelihood	Term	Description
1.8	5.4	GO:0050136	NADH dehydrogenase (ubiquinone) activity(GO:0008137) NADH dehydrogenase (quinone) activity(GO:0050136)

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Results for HyfR

Z-value: 0.59

Transcription factors associated with HyfR

Activity-expression correlation:

Activity profile of HyfR motif

Sorted Z-values of HyfR motif

Top targets:

Network of associatons between targets according to the STRING database.

First level regulatory network of HyfR

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Gene overrepresentation in cellular component category:

Gene overrepresentation in molecular function category: