GSE55662: Plasticity of transcriptional regulation under antibiotic stress

• Motif significance table
• Sample table
• Mean activities
• All promoters sorted by FOV

• Activity table
• Activity delta table
• Regulatory interactions
• Motifs sorted by significance
• Expression table
• Download the whole report

Gene Symbol	Gene ID	Gene Info
mlrA Links RegulonDB EcoCyc	mlrA	MlrA DNA binding transcriptional activator

Gene	Promoter	Pearson corr. coef.	P-value	Plot
mlrA		-0.69	5.6e-02	Click!

Promoter	Log-likelihood	Transcript	Gene	Gene Info
rplU-rpmA Show fit	2.28		rpmA Links RegulonDB EcoCyc Show fit rplU Links RegulonDB EcoCyc Show fit	50S ribosomal subunit protein L27 50S ribosomal subunit protein L21
rplU-rpmA-yhbE-obgE Show fit	1.30		rpmA Links RegulonDB EcoCyc Show fit yhbE Links RegulonDB EcoCyc Show fit rplU Links RegulonDB EcoCyc Show fit obgE Links RegulonDB EcoCyc Show fit	50S ribosomal subunit protein L27 inner membrane protein YhbE 50S ribosomal subunit protein L21 GTPase involved in chromosome partitioning and ribosome assembly
ibaG Show fit	0.62		ibaG Links RegulonDB EcoCyc Show fit	predicted DNA-binding transcriptional regulator

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Gene overrepresentation in biological process category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.3	1.3	GO:0022611	dormancy process(GO:0022611)
0.0	0.6	GO:0001101	response to acid chemical(GO:0001101)

Gene overrepresentation in cellular component category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.3	3.6	GO:0022625	large ribosomal subunit(GO:0015934) cytosolic large ribosomal subunit(GO:0022625)

Gene overrepresentation in molecular function category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.2	3.6	GO:0003735	structural constituent of ribosome(GO:0003735)