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GSE55662: Plasticity of transcriptional regulation under antibiotic stress
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Results for NsrR
Z-value: 0.49
Transcription factors associated with NsrR
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| sodB Show fit | 1.00 |
superoxide dismutase (Fe) |
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| hmp Show fit | 0.87 |
nitric oxide dioxygenase |
||
| hcp-hcr Show fit | 0.85 |
NADH oxidoreductase hybrid-cluster protein |
||
| ndh Show fit | 0.59 |
NADH:quinone oxidoreductase II |
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| grxD Show fit | 0.53 |
glutaredoxin 4 |
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| tehAB Show fit | 0.37 |
tellurite resistance protein / ethidium exporter tellurite methyltransferase |
||
| lrp Show fit | 0.33 |
Lrp transcriptional dual regulator |
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| cdd Show fit | 0.32 |
cytidine deaminase |
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| hypABCDE-fhlA Show fit | 0.30 |
FhlA transcriptional activator hydrogenase maturation protein, carbamoyl dehydratase HypD, scaffold protein for assembly of the Fe-(CN)2CO cofactor accessory protein for nickel incorporation into hydrogenase 3 HypC, protein involved in hydrogenase 3 maturation accessory protein for nickel incorporation into hydrogenase isoenzymes |
||
| ygbA Show fit | 0.30 |
predicted protein |
Network of associatons between targets according to the STRING database.
First level regulatory network of NsrR
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.6 | 1.7 | GO:0046209 | nitric oxide metabolic process(GO:0046209) nitric oxide catabolic process(GO:0046210) |
| 0.3 | 1.0 | GO:0000303 | response to superoxide(GO:0000303) superoxide metabolic process(GO:0006801) |
| 0.1 | 0.6 | GO:0019646 | aerobic electron transport chain(GO:0019646) |
| 0.1 | 0.6 | GO:0046892 | protein dehydration(GO:0018249) peptidyl-S-carbamoyl-L-cysteine dehydration(GO:0046892) |
| 0.1 | 0.3 | GO:0030091 | protein repair(GO:0030091) |
| 0.1 | 0.3 | GO:0009078 | alanine metabolic process(GO:0006522) leucine metabolic process(GO:0006551) pyruvate family amino acid metabolic process(GO:0009078) leucine biosynthetic process(GO:0009098) response to amino acid(GO:0043200) |
| 0.1 | 0.3 | GO:0046133 | pyrimidine ribonucleoside metabolic process(GO:0046131) pyrimidine ribonucleoside catabolic process(GO:0046133) pyrimidine nucleoside catabolic process(GO:0046135) |
| 0.1 | 0.2 | GO:0035383 | acyl-CoA metabolic process(GO:0006637) thioester metabolic process(GO:0035383) |
| 0.1 | 0.2 | GO:1903712 | L-cystine transport(GO:0015811) cysteine transmembrane transport(GO:1903712) |
| 0.0 | 0.2 | GO:0000027 | ribosomal large subunit assembly(GO:0000027) ribosomal large subunit biogenesis(GO:0042273) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 0.6 | GO:0031234 | extrinsic component of cytoplasmic side of plasma membrane(GO:0031234) |
| 0.0 | 0.6 | GO:1990204 | oxidoreductase complex(GO:1990204) |
| 0.0 | 0.2 | GO:0022625 | large ribosomal subunit(GO:0015934) cytosolic large ribosomal subunit(GO:0022625) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.3 | 1.0 | GO:0016721 | superoxide dismutase activity(GO:0004784) oxidoreductase activity, acting on superoxide radicals as acceptor(GO:0016721) |
| 0.2 | 0.9 | GO:0032843 | hydroperoxide reductase activity(GO:0032843) |
| 0.1 | 0.9 | GO:0016684 | peroxidase activity(GO:0004601) oxidoreductase activity, acting on peroxide as acceptor(GO:0016684) |
| 0.2 | 0.6 | GO:0008137 | NADH dehydrogenase (ubiquinone) activity(GO:0008137) NADH dehydrogenase (quinone) activity(GO:0050136) |
| 0.1 | 0.6 | GO:0070025 | carbon monoxide binding(GO:0070025) |
| 0.1 | 0.4 | GO:0015562 | efflux transmembrane transporter activity(GO:0015562) |
| 0.1 | 0.2 | GO:0033229 | core promoter binding(GO:0001047) L-cystine transmembrane transporter activity(GO:0015184) cysteine transmembrane transporter activity(GO:0033229) |
| 0.0 | 0.2 | GO:0031405 | lipoic acid binding(GO:0031405) |
| 0.0 | 0.2 | GO:0000049 | tRNA binding(GO:0000049) |
| 0.0 | 0.1 | GO:0016662 | oxidoreductase activity, acting on other nitrogenous compounds as donors, cytochrome as acceptor(GO:0016662) |