ISMARA results: AppY

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GSE55662: Plasticity of transcriptional regulation under antibiotic stress

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Results for AppY

Z-value: 0.52

Transcription factors associated with AppY

Gene Symbol	Gene ID	Gene Info
appY RegulonDB EcoCyc	appY	AppY DNA-binding transcriptional activator

Activity-expression correlation:

Gene	Promoter	Pearson corr. coef.	P-value	Plot
appY		-0.91	1.6e-03	Click!

Activity profile of AppY motif

Sorted Z-values of AppY motif

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Promoter	Log-likelihood	Transcript	Gene	Gene Info
hyaABCDEF Show fit	2.67		hyaB RegulonDB EcoCyc Show fit hyaC RegulonDB EcoCyc Show fit hyaA RegulonDB EcoCyc Show fit hyaF RegulonDB EcoCyc Show fit hyaD RegulonDB EcoCyc Show fit hyaE RegulonDB EcoCyc Show fit	hydrogenase 1, large subunit hydrogenase 1, b-type cytochrome subunit hydrogenase 1, small subunit protein involved in nickel incorporation into hydrogenase 1 proteins protein involved in processing of HyaA and HyaB proteins protein involved in quality control of HyaA
appCBXA Show fit	1.53		appC RegulonDB EcoCyc Show fit appB RegulonDB EcoCyc Show fit appA RegulonDB EcoCyc Show fit appX RegulonDB EcoCyc Show fit	cytochrome bd-II terminal oxidase subunit I cytochrome bd-II terminal oxidase subunit II periplasmic protein with phosphoanhydride phosphatase and multiple inositol-polyphosphate phosphatase activity small outer membrane protein

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Network of associatons between targets according to the STRING database.

First level regulatory network of AppY

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

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Log-likelihood per target	Total log-likelihood	Term	Description
0.5	2.7	GO:0016485	protein processing(GO:0016485)
0.4	1.5	GO:0019646	aerobic electron transport chain(GO:0019646)

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Gene overrepresentation in cellular component category:

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Log-likelihood per target	Total log-likelihood	Term	Description
0.5	2.7	GO:0031237	intrinsic component of periplasmic side of plasma membrane(GO:0031237)
0.5	1.5	GO:0070069	cytochrome complex(GO:0070069)

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Gene overrepresentation in molecular function category:

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Log-likelihood per target	Total log-likelihood	Term	Description
0.9	2.7	GO:0005048	signal sequence binding(GO:0005048)
0.5	1.5	GO:0016679	oxidoreductase activity, acting on diphenols and related substances as donors(GO:0016679) oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor(GO:0016682) sugar-phosphatase activity(GO:0050308)

Showing 1 to 2 of 2 entries

Results for AppY

Z-value: 0.52

Transcription factors associated with AppY

Activity-expression correlation:

Activity profile of AppY motif

Sorted Z-values of AppY motif

Top targets:

Network of associatons between targets according to the STRING database.

First level regulatory network of AppY

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Gene overrepresentation in cellular component category:

Gene overrepresentation in molecular function category: