ISMARA results: RutR

Project

GSE55662: Plasticity of transcriptional regulation under antibiotic stress

Navigation

Downloads

Results for RutR

Z-value: 1.49

Transcription factors associated with RutR

Gene Symbol	Gene ID	Gene Info
rutR RegulonDB EcoCyc	rutR	RutR DNA-binding transcriptional dual regulator

Activity-expression correlation:

Gene	Promoter	Pearson corr. coef.	P-value	Plot
rutR		-0.28	5.1e-01	Click!

Activity profile of RutR motif

Sorted Z-values of RutR motif

Top targets:

Search:

Show entries

Promoter	Log-likelihood	Gene	Gene Info
gadX Show fit	7.26	gadX RegulonDB EcoCyc Show fit	GadX DNA-binding transcriptional dual regulator
carAB Show fit	6.61	carB RegulonDB EcoCyc Show fit carA RegulonDB EcoCyc Show fit	carbamoyl phosphate synthetase, β chain carbamoyl phosphate synthetase, α chain
gadXW Show fit	6.04	gadW RegulonDB EcoCyc Show fit gadX RegulonDB EcoCyc Show fit	GadW DNA-binding transcriptional dual regulator GadX DNA-binding transcriptional dual regulator
fepB Show fit	3.77	fepB RegulonDB EcoCyc Show fit	ferric enterobactin ABC transporter - periplasmic binding protein
pdeR Show fit	1.83	pdeR RegulonDB EcoCyc Show fit	cyclic di-GMP phosphodiesterase
rutR Show fit	1.56	rutR RegulonDB EcoCyc Show fit	RutR DNA-binding transcriptional dual regulator
nemRA Show fit	1.33	nemA RegulonDB EcoCyc Show fit nemR RegulonDB EcoCyc Show fit	N-ethylmaleimide reductase, FMN-linked NemR DNA-binding transcriptional repressor
rutABCDEFG Show fit	1.29	rutC RegulonDB EcoCyc Show fit rutB RegulonDB EcoCyc Show fit rutA RegulonDB EcoCyc Show fit rutG RegulonDB EcoCyc Show fit rutF RegulonDB EcoCyc Show fit rutE RegulonDB EcoCyc Show fit rutD RegulonDB EcoCyc Show fit	predicted aminoacrylate peracid reductase peroxyureidoacrylate / ureidoacrylate amido hydrolase pyrimidine oxygenase uracil:H⁺ symporter RutG flavin reductase predicted malonic semialdehyde reductase predicted aminoacrylate hydrolase

Showing 1 to 8 of 8 entries

Network of associatons between targets according to the STRING database.

First level regulatory network of RutR

View svg image
View png image

Gene Ontology Analysis

Gene overrepresentation in biological process category:

Search:

Show entries

Log-likelihood per target	Total log-likelihood	Term	Description
0.2	14.9	GO:0051254	positive regulation of transcription, DNA-templated(GO:0045893) positive regulation of RNA metabolic process(GO:0051254) positive regulation of RNA biosynthetic process(GO:1902680) positive regulation of nucleic acid-templated transcription(GO:1903508)
1.3	6.6	GO:0006207	'de novo' pyrimidine nucleobase biosynthetic process(GO:0006207) pyrimidine nucleobase biosynthetic process(GO:0019856)
0.9	3.8	GO:0015685	ferric-enterobactin transport(GO:0015685)
0.1	1.8	GO:0043086	negative regulation of catalytic activity(GO:0043086)
0.4	1.3	GO:0006208	pyrimidine nucleobase catabolic process(GO:0006208) pyrimidine nucleobase transport(GO:0015855)

Showing 1 to 5 of 5 entries

Gene overrepresentation in cellular component category:

Search:

Show entries

Log-likelihood per target	Total log-likelihood	Term	Description
0.1	6.6	GO:1902494	catalytic complex(GO:1902494)
0.1	3.8	GO:0030288	outer membrane-bounded periplasmic space(GO:0030288)

Showing 1 to 2 of 2 entries

Gene overrepresentation in molecular function category:

Search:

Show entries

Log-likelihood per target	Total log-likelihood	Term	Description
1.5	13.3	GO:0001140	transcriptional activator activity, bacterial-type RNA polymerase core promoter proximal region sequence-specific binding(GO:0001140)
1.7	6.6	GO:0016884	carbon-nitrogen ligase activity, with glutamine as amido-N-donor(GO:0016884)
0.4	1.8	GO:0071111	cyclic-guanylate-specific phosphodiesterase activity(GO:0071111)
0.4	1.3	GO:0005350	monooxygenase activity(GO:0004497) pyrimidine nucleobase transmembrane transporter activity(GO:0005350)
0.0	1.0	GO:0000976	transcription regulatory region sequence-specific DNA binding(GO:0000976)

Showing 1 to 5 of 5 entries

Results for RutR

Z-value: 1.49

Transcription factors associated with RutR

Activity-expression correlation:

Activity profile of RutR motif

Sorted Z-values of RutR motif

Top targets:

Network of associatons between targets according to the STRING database.

First level regulatory network of RutR

In order to view interactive SVG image please either update your browser to latest version or install SVG plugin.

Gene Ontology Analysis

Gene overrepresentation in biological process category:

Gene overrepresentation in cellular component category:

Gene overrepresentation in molecular function category: