ISMARA results: GntR

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GSE55662: Plasticity of transcriptional regulation under antibiotic stress

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Results for GntR

Z-value: 0.99

Transcription factors associated with GntR

Gene Symbol	Gene ID	Gene Info
gntR RegulonDB EcoCyc	gntR	GntR DNA-binding transcriptional repressor

Activity-expression correlation:

Gene	Promoter	Pearson corr. coef.	P-value	Plot
gntR		-0.86	6.2e-03	Click!

Activity profile of GntR motif

Sorted Z-values of GntR motif

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Promoter	Log-likelihood	Gene	Gene Info
gntT Show fit	6.73	gntT RegulonDB EcoCyc Show fit	gluconate transporter GntT
idnK Show fit	3.56	idnK RegulonDB EcoCyc Show fit	D-gluconate kinase, thermosensitive
gntKU Show fit	2.01	gntK RegulonDB EcoCyc Show fit gntU RegulonDB EcoCyc Show fit	D-gluconate kinase, thermostable gluconate transporter GntU
gntK Show fit	1.71	gntK RegulonDB EcoCyc Show fit	D-gluconate kinase, thermostable
idnDOTR Show fit	1.52	idnD RegulonDB EcoCyc Show fit idnO RegulonDB EcoCyc Show fit idnR RegulonDB EcoCyc Show fit idnT RegulonDB EcoCyc Show fit	L-idonate 5-dehydrogenase 5-keto-D-gluconate 5-reductase IdnR transcriptional regulator L-idonate / 5-ketogluconate / gluconate transporter IdnT
edd-eda Show fit	0.84	eda RegulonDB EcoCyc Show fit edd RegulonDB EcoCyc Show fit	multifunctional 2-keto-3-deoxygluconate 6-phosphate aldolase and 2-keto-4-hydroxyglutarate aldolase and oxaloacetate decarboxylase phosphogluconate dehydratase

Showing 1 to 6 of 6 entries

Network of associatons between targets according to the STRING database.

First level regulatory network of GntR

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

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Log-likelihood per target	Total log-likelihood	Term	Description
1.6	8.1	GO:0019521	D-gluconate metabolic process(GO:0019521) D-gluconate catabolic process(GO:0046177)
0.8	1.5	GO:0042873	aldonate transport(GO:0042873)

Showing 1 to 2 of 2 entries

Gene overrepresentation in cellular component category:

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Log-likelihood per target	Total log-likelihood	Term	Description
0.0	10.3	GO:0005887	integral component of plasma membrane(GO:0005887)

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Gene overrepresentation in molecular function category:

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Log-likelihood per target	Total log-likelihood	Term	Description
2.1	8.3	GO:0015128	gluconate transmembrane transporter activity(GO:0015128) aldonate transmembrane transporter activity(GO:0042879)
2.4	7.3	GO:0046316	gluconokinase activity(GO:0046316)
0.1	0.8	GO:0016833	oxo-acid-lyase activity(GO:0016833)

Showing 1 to 3 of 3 entries

Gene overrepresentation in curated gene sets: canonical pathways category:

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Log-likelihood per target	Total log-likelihood	Term	Description
0.3	0.8	NABA MATRISOME	Ensemble of genes encoding extracellular matrix and extracellular matrix-associated proteins

Showing 1 to 1 of 1 entries

Results for GntR

Z-value: 0.99

Transcription factors associated with GntR

Activity-expression correlation:

Activity profile of GntR motif

Sorted Z-values of GntR motif

Top targets:

Network of associatons between targets according to the STRING database.

First level regulatory network of GntR

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Gene overrepresentation in cellular component category:

Gene overrepresentation in molecular function category:

Gene overrepresentation in curated gene sets: canonical pathways category: