GSE55662: Plasticity of transcriptional regulation under antibiotic stress

• Motif significance table
• Sample table
• Mean activities
• All promoters sorted by FOV

• Activity table
• Activity delta table
• Regulatory interactions
• Motifs sorted by significance
• Expression table
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Gene Symbol	Gene ID	Gene Info
caiF Links RegulonDB EcoCyc	caiF	CaiF transcriptional activator

Gene	Promoter	Pearson corr. coef.	P-value	Plot
caiF		0.71	5.1e-02	Click!

Promoter	Log-likelihood	Transcript	Gene	Gene Info
fixABCX Show fit	11.82		fixC Links RegulonDB EcoCyc Show fit fixB Links RegulonDB EcoCyc Show fit fixA Links RegulonDB EcoCyc Show fit fixX Links RegulonDB EcoCyc Show fit	flavoprotein (electron transport), possibly involved in anaerobic carnitine metabolism predicted electron transfer flavoprotein, NAD/FAD-binding domain and ETFP adenine nucleotide-binding domain-like predicted elecron transfer flavoprotein subunit, ETFP adenine nucleotide-binding domain putative ferredoxin possibly involved in anaerobic carnitine metabolism
caiTABCDE Show fit	10.01		caiT Links RegulonDB EcoCyc Show fit caiE Links RegulonDB EcoCyc Show fit caiD Links RegulonDB EcoCyc Show fit caiC Links RegulonDB EcoCyc Show fit caiB Links RegulonDB EcoCyc Show fit caiA Links RegulonDB EcoCyc Show fit	L-carnitine : γ-butyrobetaine antiporter predicted acyl transferase crotonobetainyl-CoA hydratase carnitine-CoA ligase γ-butyrobetainyl-CoA:carnitine CoA transferase crotonobetainyl-CoA reductase

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Gene overrepresentation in biological process category:

Log-likelihood per target	Total log-likelihood	Term	Description
7.3	21.8	GO:0009437	carnitine metabolic process(GO:0009437)

Gene overrepresentation in cellular component category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	10.0	GO:0016021	integral component of membrane(GO:0016021)
0.0	11.8	GO:0005829	cytosol(GO:0005829)

Gene overrepresentation in molecular function category:

Log-likelihood per target	Total log-likelihood	Term	Description
3.3	10.0	GO:0015651	amino-acid betaine transmembrane transporter activity(GO:0015199) quaternary ammonium group transmembrane transporter activity(GO:0015651)
1.3	11.8	GO:0016645	oxidoreductase activity, acting on the CH-NH group of donors(GO:0016645)