GSE55662: Plasticity of transcriptional regulation under antibiotic stress

• Motif significance table
• Sample table
• Mean activities
• All promoters sorted by FOV

• Activity table
• Activity delta table
• Regulatory interactions
• Motifs sorted by significance
• Expression table
• Download the whole report

Gene Symbol	Gene ID	Gene Info
basR Links RegulonDB EcoCyc	basR	BasR transcriptional regulator

Promoter	Log-likelihood	Transcript	Gene	Gene Info
cspI Show fit	6.37		cspI Links RegulonDB EcoCyc Show fit	Qin prophage; cold shock protein
qseBC Show fit	4.54		qseC Links RegulonDB EcoCyc Show fit qseB Links RegulonDB EcoCyc Show fit	QseC sensory histidine kinase QseB transcriptional activator
tomB-hha Show fit	4.03		tomB Links RegulonDB EcoCyc Show fit hha Links RegulonDB EcoCyc Show fit	protein that modulates Hha toxicity haemolysin expression modulating protein
csgDEFG Show fit	3.46		csgG Links RegulonDB EcoCyc Show fit csgF Links RegulonDB EcoCyc Show fit csgE Links RegulonDB EcoCyc Show fit csgD Links RegulonDB EcoCyc Show fit	curli secretion channel curli assembly component curli transport specificity factor CsgD DNA-binding transcriptional dual regulator

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Gene overrepresentation in biological process category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.5	3.5	GO:1900190	regulation of multi-organism process(GO:0043900) regulation of single-species biofilm formation(GO:1900190)
0.5	6.4	GO:0009409	response to cold(GO:0009409)
0.2	4.0	GO:0044010	single-species biofilm formation(GO:0044010)
0.2	4.5	GO:0000160	phosphorelay signal transduction system(GO:0000160)

Gene overrepresentation in cellular component category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.4	3.5	GO:0031246	intrinsic component of periplasmic side of cell outer membrane(GO:0031246)
0.0	4.5	GO:0016021	integral component of membrane(GO:0016021)
0.0	10.4	GO:0005829	cytosol(GO:0005829)

Gene overrepresentation in molecular function category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.2	4.5	GO:0000155	phosphorelay sensor kinase activity(GO:0000155) protein histidine kinase activity(GO:0004673)
0.2	3.0	GO:0001159	bacterial-type RNA polymerase core promoter proximal region sequence-specific DNA binding(GO:0000986) core promoter proximal region sequence-specific DNA binding(GO:0000987) core promoter proximal region DNA binding(GO:0001159)
0.0	4.0	GO:0003677	DNA binding(GO:0003677)