ISMARA results: AlsR

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GSE55662: Plasticity of transcriptional regulation under antibiotic stress

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Results for AlsR

Z-value: 0.69

Transcription factors associated with AlsR

Gene Symbol	Gene ID	Gene Info
rpiR RegulonDB EcoCyc	rpiR	AlsR DNA-binding transcriptional repressor

Activity-expression correlation:

Gene	Promoter	Pearson corr. coef.	P-value	Plot
rpiR		0.66	7.2e-02	Click!

Activity profile of AlsR motif

Sorted Z-values of AlsR motif

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Promoter	Log-likelihood	Transcript	Gene	Gene Info
rpiR-alsBACE Show fit	3.85		rpiR RegulonDB EcoCyc Show fit alsE RegulonDB EcoCyc Show fit alsB RegulonDB EcoCyc Show fit alsC RegulonDB EcoCyc Show fit alsA RegulonDB EcoCyc Show fit	AlsR DNA-binding transcriptional repressor allulose-6-phosphate 3-epimerase D-allose ABC transporter - periplasmic binding protein D-allose ABC transporter - membrane subunit D-allose ABC transporter - ATP binding subunit
rpiB Show fit	1.51		rpiB RegulonDB EcoCyc Show fit	allose-6-phosphate isomerase / ribose-5-phosphate isomerase B

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Network of associatons between targets according to the STRING database.

First level regulatory network of AlsR

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

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Log-likelihood per target	Total log-likelihood	Term	Description
0.6	3.9	GO:0009052	pentose-phosphate shunt, non-oxidative branch(GO:0009052)
0.1	1.5	GO:0019320	hexose catabolic process(GO:0019320)

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Gene overrepresentation in cellular component category:

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Log-likelihood per target	Total log-likelihood	Term	Description
0.1	3.9	GO:0043190	ATP-binding cassette (ABC) transporter complex(GO:0043190) ATPase dependent transmembrane transport complex(GO:0098533) ATPase complex(GO:1904949)

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Gene overrepresentation in molecular function category:

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Log-likelihood per target	Total log-likelihood	Term	Description
1.0	3.9	GO:0004750	ribulose-phosphate 3-epimerase activity(GO:0004750)
0.1	1.5	GO:0016861	intramolecular oxidoreductase activity, interconverting aldoses and ketoses(GO:0016861)

Showing 1 to 2 of 2 entries

Results for AlsR

Z-value: 0.69

Transcription factors associated with AlsR

Activity-expression correlation:

Activity profile of AlsR motif

Sorted Z-values of AlsR motif

Top targets:

Network of associatons between targets according to the STRING database.

First level regulatory network of AlsR

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Gene overrepresentation in cellular component category:

Gene overrepresentation in molecular function category: