ISMARA results: GalR

Project

GSE55662: Plasticity of transcriptional regulation under antibiotic stress

Navigation

Downloads

Results for GalR

Z-value: 0.33

Transcription factors associated with GalR

Gene Symbol	Gene ID	Gene Info
galR RegulonDB EcoCyc	galR	GalR DNA-binding transcriptional dual regulator

Activity-expression correlation:

Gene	Promoter	Pearson corr. coef.	P-value	Plot
galR		0.73	4.2e-02	Click!

Activity profile of GalR motif

Sorted Z-values of GalR motif

Top targets:

Search:

Show entries

Promoter	Log-likelihood	Gene	Gene Info
mglBAC Show fit	0.90	mglA RegulonDB EcoCyc Show fit mglB RegulonDB EcoCyc Show fit mglC RegulonDB EcoCyc Show fit	D-galactose / D-galactoside ABC transporter - ATP binding subunit D-galactose / D-galactoside ABC transporter - periplasmic binding protein D-galactose / D-galactoside ABC transporter - membrane subunit
galE Show fit	0.76	galE RegulonDB EcoCyc Show fit	UDP-glucose 4-epimerase
galET Show fit	0.75	galT RegulonDB EcoCyc Show fit galE RegulonDB EcoCyc Show fit	galactose-1-phosphate uridylyltransferase UDP-glucose 4-epimerase
galETK Show fit	0.64	galT RegulonDB EcoCyc Show fit galE RegulonDB EcoCyc Show fit galK RegulonDB EcoCyc Show fit	galactose-1-phosphate uridylyltransferase UDP-glucose 4-epimerase galactokinase
galR Show fit	0.41	galR RegulonDB EcoCyc Show fit	GalR DNA-binding transcriptional dual regulator
galETKM Show fit	0.36	galT RegulonDB EcoCyc Show fit galE RegulonDB EcoCyc Show fit galM RegulonDB EcoCyc Show fit galK RegulonDB EcoCyc Show fit	galactose-1-phosphate uridylyltransferase UDP-glucose 4-epimerase galactose-1-epimerase galactokinase

Showing 1 to 6 of 6 entries

Network of associatons between targets according to the STRING database.

First level regulatory network of GalR

View svg image
View png image

Gene Ontology Analysis

Gene overrepresentation in biological process category:

Search:

Show entries

Log-likelihood per target	Total log-likelihood	Term	Description
0.6	2.5	GO:0033499	galactose catabolic process via UDP-galactose(GO:0033499)
0.3	0.9	GO:0015765	methylgalactoside transport(GO:0015765)

Showing 1 to 2 of 2 entries

Gene overrepresentation in cellular component category:

Search:

Show entries

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.9	GO:1904949	ATP-binding cassette (ABC) transporter complex(GO:0043190) ATPase dependent transmembrane transport complex(GO:0098533) ATPase complex(GO:1904949)

Showing 1 to 1 of 1 entries

Gene overrepresentation in molecular function category:

Search:

Show entries

Log-likelihood per target	Total log-likelihood	Term	Description
0.6	2.5	GO:0003978	UDP-glucose 4-epimerase activity(GO:0003978)
0.3	0.9	GO:0015592	methylgalactoside transmembrane transporter activity(GO:0015592)

Showing 1 to 2 of 2 entries

Gene overrepresentation in curated gene sets: REACTOME pathways category:

Search:

Show entries

Log-likelihood per target	Total log-likelihood	Term	Description
0.2	2.5	REACTOME METABOLISM OF CARBOHYDRATES	Genes involved in Metabolism of carbohydrates

Showing 1 to 1 of 1 entries

Results for GalR

Z-value: 0.33

Transcription factors associated with GalR

Activity-expression correlation:

Activity profile of GalR motif

Sorted Z-values of GalR motif

Top targets:

Network of associatons between targets according to the STRING database.

First level regulatory network of GalR

In order to view interactive SVG image please either update your browser to latest version or install SVG plugin.

Gene Ontology Analysis

Gene overrepresentation in biological process category:

Gene overrepresentation in cellular component category:

Gene overrepresentation in molecular function category:

Gene overrepresentation in curated gene sets: REACTOME pathways category: