ISMARA results: NhaR

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GSE55662: Plasticity of transcriptional regulation under antibiotic stress

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Results for NhaR

Z-value: 0.55

Transcription factors associated with NhaR

Gene Symbol	Gene ID	Gene Info
nhaR RegulonDB EcoCyc	nhaR	NhaR transcriptional activator

Activity-expression correlation:

Gene	Promoter	Pearson corr. coef.	P-value	Plot
nhaR		-0.48	2.2e-01	Click!

Activity profile of NhaR motif

Sorted Z-values of NhaR motif

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Promoter	Log-likelihood	Gene	Gene Info
pgaABCD Show fit	3.19	pgaA RegulonDB EcoCyc Show fit pgaB RegulonDB EcoCyc Show fit pgaC RegulonDB EcoCyc Show fit pgaD RegulonDB EcoCyc Show fit	partially N-deacetylated poly-β-1,6-N-acetyl-D-glucosamine outer membrane porin poly-β-1,6-N-acetyl-D-glucosamine N-deacetylase poly-β-1,6-N-acetyl-D-glucosamine synthase - PgaC subunit poly-β-1,6-N-acetyl-D-glucosamine synthase - PgaD subunit
osmC Show fit	0.28	osmC RegulonDB EcoCyc Show fit	osmotically inducible peroxiredoxin
nhaAR Show fit	0.24	nhaA RegulonDB EcoCyc Show fit nhaR RegulonDB EcoCyc Show fit	Na⁺:H⁺ antiporter NhaA NhaR transcriptional activator

Showing 1 to 3 of 3 entries

Network of associatons between targets according to the STRING database.

First level regulatory network of NhaR

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

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Log-likelihood per target	Total log-likelihood	Term	Description
1.1	3.2	GO:0043708	cell adhesion involved in biofilm formation(GO:0043708)
0.0	0.3	GO:0006972	hyperosmotic response(GO:0006972)
0.1	0.2	GO:0009651	response to salt stress(GO:0009651)

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Gene overrepresentation in cellular component category:

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Log-likelihood per target	Total log-likelihood	Term	Description
0.4	3.2	GO:0031246	intrinsic component of periplasmic side of cell outer membrane(GO:0031246)

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Gene overrepresentation in molecular function category:

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Log-likelihood per target	Total log-likelihood	Term	Description
0.8	3.2	GO:0008375	acetylglucosaminyltransferase activity(GO:0008375)
0.1	0.3	GO:0051920	peroxiredoxin activity(GO:0051920)
0.1	0.2	GO:0015299	phospholipid binding(GO:0005543) solute:proton antiporter activity(GO:0015299) cation:cation antiporter activity(GO:0015491)

Showing 1 to 3 of 3 entries

Results for NhaR

Z-value: 0.55

Transcription factors associated with NhaR

Activity-expression correlation:

Activity profile of NhaR motif

Sorted Z-values of NhaR motif

Top targets:

Network of associatons between targets according to the STRING database.

First level regulatory network of NhaR

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Gene overrepresentation in cellular component category:

Gene overrepresentation in molecular function category: