ISMARA results: DcuR

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GSE55662: Plasticity of transcriptional regulation under antibiotic stress

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Results for DcuR

Z-value: 0.65

Transcription factors associated with DcuR

Gene Symbol	Gene ID	Gene Info
dcuR RegulonDB EcoCyc	dcuR	DcuR transcriptional activator

Activity-expression correlation:

Gene	Promoter	Pearson corr. coef.	P-value	Plot
dcuR		0.40	3.3e-01	Click!

Activity profile of DcuR motif

Sorted Z-values of DcuR motif

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Promoter	Log-likelihood	Gene	Gene Info
dcuB-fumB Show fit	2.71	fumB RegulonDB EcoCyc Show fit dcuB RegulonDB EcoCyc Show fit	fumarase B dicarboxylate transporter DcuB
frdABCD Show fit	0.58	frdA RegulonDB EcoCyc Show fit frdB RegulonDB EcoCyc Show fit frdC RegulonDB EcoCyc Show fit frdD RegulonDB EcoCyc Show fit	fumarate reductase flavoprotein fumarate reductase iron-sulfur protein fumarate reductase membrane protein fumarate reductase membrane protein
dpiBA Show fit	0.56	dpiB RegulonDB EcoCyc Show fit dpiA RegulonDB EcoCyc Show fit	DpiB sensory histidine kinase DpiA transcriptional dual regulator
dctA Show fit	0.36	dctA RegulonDB EcoCyc Show fit	C4 dicarboxylate / orotate:H⁺ symporter

Showing 1 to 4 of 4 entries

Network of associatons between targets according to the STRING database.

First level regulatory network of DcuR

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

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Log-likelihood per target	Total log-likelihood	Term	Description
0.4	3.1	GO:0015740	C4-dicarboxylate transport(GO:0015740)
0.2	0.6	GO:0071310	cellular response to organic substance(GO:0071310)
0.1	0.6	GO:0006113	fermentation(GO:0006113)

Showing 1 to 3 of 3 entries

Gene overrepresentation in cellular component category:

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Log-likelihood per target	Total log-likelihood	Term	Description
0.0	3.6	GO:0005887	integral component of plasma membrane(GO:0005887)
0.2	0.6	GO:0045274	respiratory chain complex II(GO:0045273) plasma membrane respiratory chain complex II(GO:0045274)

Showing 1 to 2 of 2 entries

Gene overrepresentation in molecular function category:

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Log-likelihood per target	Total log-likelihood	Term	Description
0.7	2.7	GO:0005469	succinate:fumarate antiporter activity(GO:0005469)
0.2	0.6	GO:0000104	succinate dehydrogenase activity(GO:0000104) oxidoreductase activity, acting on the CH-CH group of donors, quinone or related compound as acceptor(GO:0016635)
0.1	0.6	GO:0000156	phosphorelay response regulator activity(GO:0000156)
0.4	0.4	GO:0015138	dicarboxylic acid transmembrane transporter activity(GO:0005310) fumarate transmembrane transporter activity(GO:0015138) succinate transmembrane transporter activity(GO:0015141) C4-dicarboxylate transmembrane transporter activity(GO:0015556)

Showing 1 to 4 of 4 entries

Results for DcuR

Z-value: 0.65

Transcription factors associated with DcuR

Activity-expression correlation:

Activity profile of DcuR motif

Sorted Z-values of DcuR motif

Top targets:

Network of associatons between targets according to the STRING database.

First level regulatory network of DcuR

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Gene overrepresentation in cellular component category:

Gene overrepresentation in molecular function category: