ISMARA results: ArgP

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GSE55662: Plasticity of transcriptional regulation under antibiotic stress

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Results for ArgP

Z-value: 0.70

Transcription factors associated with ArgP

Gene Symbol	Gene ID	Gene Info
argP RegulonDB EcoCyc	argP	ArgP transcriptional activator

Activity-expression correlation:

Gene	Promoter	Pearson corr. coef.	P-value	Plot
argP		0.54	1.7e-01	Click!

Activity profile of ArgP motif

Sorted Z-values of ArgP motif

Top targets:

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Promoter	Log-likelihood	Gene	Gene Info
argO Show fit	2.57	argO RegulonDB EcoCyc Show fit	L-arginine exporter
lysC Show fit	1.68	lysC RegulonDB EcoCyc Show fit	aspartate kinase III
lysP Show fit	1.28	lysP RegulonDB EcoCyc Show fit	lysine:H⁺ symporter
lysA Show fit	0.95	lysA RegulonDB EcoCyc Show fit	diaminopimelate decarboxylase
dapB Show fit	0.47	dapB RegulonDB EcoCyc Show fit	4-hydroxy-tetrahydrodipicolinate reductase
argP Show fit	0.17	argP RegulonDB EcoCyc Show fit	ArgP transcriptional activator
dnaAN-recF Show fit	0.14	dnaA RegulonDB EcoCyc Show fit recF RegulonDB EcoCyc Show fit dnaN RegulonDB EcoCyc Show fit	chromosomal replication initiator protein DnaA; DNA-binding transcriptional dual regulator ssDNA and dsDNA binding, ATP binding DNA polymerase III, β subunit

Showing 1 to 7 of 7 entries

Network of associatons between targets according to the STRING database.

First level regulatory network of ArgP

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

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Log-likelihood per target	Total log-likelihood	Term	Description
0.5	2.6	GO:0015809	arginine transport(GO:0015809) L-arginine transport(GO:1902023)
0.6	1.7	GO:0009090	homoserine biosynthetic process(GO:0009090) homoserine metabolic process(GO:0009092)
0.4	1.3	GO:0015819	lysine transport(GO:0015819) L-lysine transport(GO:1902022)
0.2	1.0	GO:0009089	lysine biosynthetic process via diaminopimelate(GO:0009089)
0.1	0.2	GO:2000104	regulation of DNA-dependent DNA replication initiation(GO:0030174) negative regulation of DNA-dependent DNA replication(GO:2000104)
0.1	0.1	GO:0006275	regulation of DNA replication(GO:0006275)

Showing 1 to 6 of 6 entries

Gene overrepresentation in cellular component category:

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Log-likelihood per target	Total log-likelihood	Term	Description
0.0	3.8	GO:0005887	integral component of plasma membrane(GO:0005887)

Showing 1 to 1 of 1 entries

Gene overrepresentation in molecular function category:

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Log-likelihood per target	Total log-likelihood	Term	Description
0.6	2.6	GO:0015181	arginine transmembrane transporter activity(GO:0015181)
0.6	1.7	GO:0004072	aspartate kinase activity(GO:0004072) amino acid kinase activity(GO:0019202)
0.1	1.3	GO:0015171	amino acid transmembrane transporter activity(GO:0015171)
0.1	1.0	GO:0016831	carboxy-lyase activity(GO:0016831)
0.0	0.5	GO:0016628	oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor(GO:0016628)
0.0	0.2	GO:0003681	bent DNA binding(GO:0003681)

Showing 1 to 6 of 6 entries

Results for ArgP

Z-value: 0.70

Transcription factors associated with ArgP

Activity-expression correlation:

Activity profile of ArgP motif

Sorted Z-values of ArgP motif

Top targets:

Network of associatons between targets according to the STRING database.

First level regulatory network of ArgP

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Gene overrepresentation in cellular component category:

Gene overrepresentation in molecular function category: